Clc09G03960 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G03960
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 3062307 .. 3062714 (+)
RNA-Seq ExpressionClc09G03960
SyntenyClc09G03960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACAACGAGTTCGTTTGAAAAGGAAACGAATAGAAACAGCCAATAGAGCACCAAAATGAAATCTACAACAGTATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAACGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATGTTGCTTTTTGGTTTATCCGATTCGGAGAATGTAAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

mRNA sequence

ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACAACGATATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAACGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATGTTGCTTTTTGGTTTATCCGATTCGGAGAATGTAAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

Coding sequence (CDS)

ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACAACGATATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAACGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATGTTGCTTTTTGGTTTATCCGATTCGGAGAATGTAAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

Protein sequence

MHAFLLIFVAKAINNDILPIKEVDEDDEMIQLNPEALRTEPENGDGNRPGGPLIPVRFLRPFGGVKGQIMLLFGLSDSENVKFDGFDFTTNFPVVFIHTSIISLFTIGGGKIQL
Homology
[Close]
BLAST of Clc09G03960 vs. NCBI nr
Match: KGN45174.1 (hypothetical protein Csa_016039 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-14
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 29 MIQLNPEALRTEPENGDGNRPGGPLIPVRFLRPFGGVKGQIMLLFGLSDSENVKFDGFDF 88
          +IQLNPEA   EPE  DGNR   PLIPVRFLR FGGVKGQ  + FGLSDSE+VKFD FD 
Sbjct: 18 VIQLNPEA---EPEKNDGNRRDRPLIPVRFLRLFGGVKGQKFMAFGLSDSESVKFDYFDL 77

Query: 89 TTN-FPVVFIH 99
              FPV F+H
Sbjct: 78 CCKFFPVGFVH 85

[Close]
BLAST of Clc09G03960 vs. NCBI nr
Match: KAG6575658.1 (hypothetical protein SDJN03_26297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 29 MIQLNPEALRTEPENGDGNRPGGPLIPVRFLRPFGGVK 67
          MIQLNPEA +TEPE  DG RP  PLIP RF R FG VK
Sbjct: 18 MIQLNPEAPQTEPEKEDGIRPDQPLIPARFFRLFGEVK 55

[Close]
BLAST of Clc09G03960 vs. ExPASy TrEMBL
Match: A0A0A0K8G2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429600 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 29 MIQLNPEALRTEPENGDGNRPGGPLIPVRFLRPFGGVKGQIMLLFGLSDSENVKFDGFDF 88
          +IQLNPEA   EPE  DGNR   PLIPVRFLR FGGVKGQ  + FGLSDSE+VKFD FD 
Sbjct: 18 VIQLNPEA---EPEKNDGNRRDRPLIPVRFLRLFGGVKGQKFMAFGLSDSESVKFDYFDL 77

Query: 89 TTN-FPVVFIH 99
              FPV F+H
Sbjct: 78 CCKFFPVGFVH 85

The following BLAST results are available for this feature:
BLAST of Clc09G03960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45174.12.9e-1467.61hypothetical protein Csa_016039 [Cucumis sativus][more]
KAG6575658.16.1e-0471.05hypothetical protein SDJN03_26297, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G03960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G03960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8G21.4e-1467.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429600 PE=4 SV=1[more]
BLAST of Clc09G03960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G03960.2Clc09G03960.2mRNA