Clc09G03890 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03890
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 3023772 .. 3024656 (+)
RNA-Seq Expression	Clc09G03890
Synteny	Clc09G03890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAGAAAAAAAACTTTTATTTCTTTGTTGTTAAAAATATATATTTATATAGACGGGCATGCAACACATGGGCAATGGCCTTTGCATTTGTGAAGCAAATGGGGAGTGAGAGCATATCTCATAAACACCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGCTTCAAAATCTCACACCAAAGAATGACGATCTTAATGTCGTTGGTAATGGAGATCGATACAAGAGCCCTGCAATGAAAGGGTTCGAGAACAACAACGACCATAAAAGCTTGAAACAACTCATCAATGGCGAAGGGAAGGTGGAAACGAGGTCGGACGAGGGTAACCGAGGAAGGAACTCGCTCGGTCAACACTTTAGTGAAGAAGAGATCAACAATCTTCAAATTGTGAAGAAACAACATCATGATGGATTACAAGGAGTGAAGCTGAAAAAAGTGGTTGGAAAATTTTTAAGAAATTTGATCAAAGGTGGTGGTGATCAACGCCAGCTGATGAAGAAGCCAATTAGAAATAAGTCATTTCTCTATTCACAATGAAGACAAAAATATTCATCAAAACTTCATCATTTTGCAGAGGTTGGTGAAAATGGAGTAATTGTTTTCTTTCTTCTTTAATTTCAATACTTCATAGATAAAAGAGGATTAAATTTCTTAAAATATTGTATATGAAACCATATATATGTGTGTGTATGTATATCTATGTTGTATAAATATTTGGAAGTATATTGTATTAATGCTTTTTATTGTGGTAATTAAACTGAAAACTTAGAGATTTTTCGATCATTATATGTATTCTTGAAGGTAAGTTAAGATAATATATATTTATATTATATAATATGTGTTTGTAAGAGTTCATTC

mRNA sequence

AAAAAAGAGAAAAAAAACTTTTATTTCTTTGTTGTTAAAAATATATATTTATATAGACGGGCATGCAACACATGGGCAATGGCCTTTGCATTTGTGAAGCAAATGGGGAGTGAGAGCATATCTCATAAACACCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGCTTCAAAATCTCACACCAAAGAATGACGATCTTAATGTCGTTGGTAATGGAGATCGATACAAGAGCCCTGCAATGAAAGGGTTCGAGAACAACAACGACCATAAAAGCTTGAAACAACTCATCAATGGCGAAGGGAAGGTGGAAACGAGGTCGGACGAGGGTAACCGAGGAAGGAACTCGCTCGGTCAACACTTTAGTGAAGAAGAGATCAACAATCTTCAAATTGTGAAGAAACAACATCATGATGGATTACAAGGAGTGAAGCTGAAAAAAGTGGTTGGAAAATTTTTAAGAAATTTGATCAAAGGTGGTGGTGATCAACGCCAGCTGATGAAGAAGCCAATTAGAAATAAGTCATTTCTCTATTCACAATGAAGACAAAAATATTCATCAAAACTTCATCATTTTGCAGAGGTTGGTGAAAATGGAGTAATTGTTTTCTTTCTTCTTTAATTTCAATACTTCATAGATAAAAGAGGATTAAATTTCTTAAAATATTGTATATGAAACCATATATATGTGTGTGTATGTATATCTATGTTGTATAAATATTTGGAAGTATATTGTATTAATGCTTTTTATTGTGGTAATTAAACTGAAAACTTAGAGATTTTTCGATCATTATATGTATTCTTGAAGGTAAGTTAAGATAATATATATTTATATTATATAATATGTGTTTGTAAGAGTTCATTC

Coding sequence (CDS)

ATGGCCTTTGCATTTGTGAAGCAAATGGGGAGTGAGAGCATATCTCATAAACACCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGCTTCAAAATCTCACACCAAAGAATGACGATCTTAATGTCGTTGGTAATGGAGATCGATACAAGAGCCCTGCAATGAAAGGGTTCGAGAACAACAACGACCATAAAAGCTTGAAACAACTCATCAATGGCGAAGGGAAGGTGGAAACGAGGTCGGACGAGGGTAACCGAGGAAGGAACTCGCTCGGTCAACACTTTAGTGAAGAAGAGATCAACAATCTTCAAATTGTGAAGAAACAACATCATGATGGATTACAAGGAGTGAAGCTGAAAAAAGTGGTTGGAAAATTTTTAAGAAATTTGATCAAAGGTGGTGGTGATCAACGCCAGCTGATGAAGAAGCCAATTAGAAATAAGTCATTTCTCTATTCACAATGA

Protein sequence

MAFAFVKQMGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENNNDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKKVVGKFLRNLIKGGGDQRQLMKKPIRNKSFLYSQ

Homology

[Close]

BLAST of Clc09G03890 vs. NCBI nr
Match: XP_038896195.1 (uncharacterized protein LOC120084478 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHKHHYDISMSKRTRKPAKIQDELQNL   NDDLNV+G GDR++SPA KGFE  
Sbjct: 1   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLALNNDDLNVIGEGDRFESPATKGFEIE 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           ND KSL+QLINGEGK ETRSDEGNRGRNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDRKSLEQLINGEGKEETRSDEGNRGRNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGDQRQLMKKPIRNKSFL 159
           VVGKFLRNLIKGGGDQ QLMKKPIR K FL
Sbjct: 121 VVGKFLRNLIKGGGDQHQLMKKPIRKKPFL 150

[Close]

BLAST of Clc09G03890 vs. NCBI nr
Match: XP_011659480.2 (uncharacterized protein LOC105436185 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 126/158 (79.75%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 3   FAFVKQMGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAM 62
           F FVKQMGSESISHK HYDISMSKRTRKPAKIQDELQ L   +DDL ++G GD+      
Sbjct: 16  FHFVKQMGSESISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQ------ 75

Query: 63  KGFENNNDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQ 122
              E NNDHKSLKQLI+GEGK E RSDEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQ
Sbjct: 76  --SEINNDHKSLKQLISGEGKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQ 135

Query: 123 GVKLKKVVGKFLRNLIKGGGD--QRQLMKKPIRNKSFL 159
           GVKLKKVVGKFLRNLIKGGGD  Q QLMKKPIR KSFL
Sbjct: 136 GVKLKKVVGKFLRNLIKGGGDHHQHQLMKKPIRKKSFL 165

[Close]

BLAST of Clc09G03890 vs. NCBI nr
Match: XP_008461224.1 (PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo] >KAA0058672.1 uncharacterized protein E6C27_scaffold339G001420 [Cucumis melo var. makuwa] >TYK10479.1 uncharacterized protein E5676_scaffold459G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-55
Identity = 121/151 (80.13%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHK HYDISMSKRTRKPAKIQDELQN T K+D L+++  GDR         E+N
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDR--------SESN 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           NDHKSLKQLI+GEGK ETR DEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDHKSLKQLISGEGKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGD-QRQLMKKPIRNKSFL 159
           VVGKFLRNLIKGGGD Q QLMKKP R KSFL
Sbjct: 121 VVGKFLRNLIKGGGDHQHQLMKKPTRKKSFL 143

[Close]

BLAST of Clc09G03890 vs. NCBI nr
Match: KAE8646415.1 (hypothetical protein Csa_016003 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-54
Identity = 121/155 (78.06%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHK HYDISMSKRTRKPAKIQDELQ L   +DDL ++G GD+         E N
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQ--------SEIN 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           NDHKSLKQLI+GEGK E RSDEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDHKSLKQLISGEGKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGD--QRQLMKKPIRNKSFLYSQ 162
           VVGKFLRNLIKGGGD  Q QLMKKPIR KSFL+ +
Sbjct: 121 VVGKFLRNLIKGGGDHHQHQLMKKPIRKKSFLHKR 147

[Close]

BLAST of Clc09G03890 vs. NCBI nr
Match: XP_022959694.1 (uncharacterized protein LOC111460691 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 5.7e-48
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           M SESISHKH+YDISMSKRTRKPAKIQDELQNLTP N+DLN V N DR+ SP  KGFE N
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFE-N 70

Query: 69  NDHKSLKQLINGEGKVETR--SDEGNRGRNSLGQHFSEEEIN-NLQIVKKQHHDGLQGVK 128
           N+HKSLKQL+N E K ETR   DEG RGRNSLGQHFS+EE+N NLQIVKKQH DGLQGVK
Sbjct: 71  NEHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVK 130

Query: 129 LKKVVGKFLRNLIKGGGDQRQLMKKPIRN 155
           LKKVVG FLR+LIK GGD+ QL KKP +N
Sbjct: 131 LKKVVGNFLRSLIK-GGDKHQL-KKPTKN 155

[Close]

BLAST of Clc09G03890 vs. ExPASy TrEMBL
Match: A0A5A7US55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001280 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 121/151 (80.13%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHK HYDISMSKRTRKPAKIQDELQN T K+D L+++  GDR         E+N
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDR--------SESN 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           NDHKSLKQLI+GEGK ETR DEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDHKSLKQLISGEGKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGD-QRQLMKKPIRNKSFL 159
           VVGKFLRNLIKGGGD Q QLMKKP R KSFL
Sbjct: 121 VVGKFLRNLIKGGGDHQHQLMKKPTRKKSFL 143

[Close]

BLAST of Clc09G03890 vs. ExPASy TrEMBL
Match: A0A1S3CFF2 (uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 121/151 (80.13%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHK HYDISMSKRTRKPAKIQDELQN T K+D L+++  GDR         E+N
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDR--------SESN 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           NDHKSLKQLI+GEGK ETR DEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDHKSLKQLISGEGKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGD-QRQLMKKPIRNKSFL 159
           VVGKFLRNLIKGGGD Q QLMKKP R KSFL
Sbjct: 121 VVGKFLRNLIKGGGDHQHQLMKKPTRKKSFL 143

[Close]

BLAST of Clc09G03890 vs. ExPASy TrEMBL
Match: A0A0A0KBK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.4e-54
Identity = 121/152 (79.61%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           MGSESISHK HYDISMSKRTRKPAKIQDELQ L   +DDL ++G GD+         E N
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQ--------SEIN 60

Query: 69  NDHKSLKQLINGEGKVETRSDEGNRGRNSLGQHFSEEEINNLQIVKKQHHDGLQGVKLKK 128
           NDHKSLKQLI+GEGK E RSDEGNR RNSLGQHFS+EEINNLQIVKKQH DGLQGVKLKK
Sbjct: 61  NDHKSLKQLISGEGKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKK 120

Query: 129 VVGKFLRNLIKGGGD--QRQLMKKPIRNKSFL 159
           VVGKFLRNLIKGGGD  Q QLMKKPIR KSFL
Sbjct: 121 VVGKFLRNLIKGGGDHHQHQLMKKPIRKKSFL 144

[Close]

BLAST of Clc09G03890 vs. ExPASy TrEMBL
Match: A0A6J1H8U7 (uncharacterized protein LOC111460691 OS=Cucurbita moschata OX=3662 GN=LOC111460691 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           M SESISHKH+YDISMSKRTRKPAKIQDELQNLTP N+DLN V N DR+ SP  KGFE N
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFE-N 70

Query: 69  NDHKSLKQLINGEGKVETR--SDEGNRGRNSLGQHFSEEEIN-NLQIVKKQHHDGLQGVK 128
           N+HKSLKQL+N E K ETR   DEG RGRNSLGQHFS+EE+N NLQIVKKQH DGLQGVK
Sbjct: 71  NEHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVK 130

Query: 129 LKKVVGKFLRNLIKGGGDQRQLMKKPIRN 155
           LKKVVG FLR+LIK GGD+ QL KKP +N
Sbjct: 131 LKKVVGNFLRSLIK-GGDKHQL-KKPTKN 155

[Close]

BLAST of Clc09G03890 vs. ExPASy TrEMBL
Match: A0A6J1KW04 (uncharacterized protein LOC111497689 OS=Cucurbita maxima OX=3661 GN=LOC111497689 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.6e-48
Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 9   MGSESISHKHHYDISMSKRTRKPAKIQDELQNLTPKNDDLNVVGNGDRYKSPAMKGFENN 68
           M SESISHKH+YDISMSKRTRKPAKIQDELQNLTP N+DLN V N D++ SP  KGFE N
Sbjct: 11  MESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDQFGSPTTKGFE-N 70

Query: 69  NDHKSLKQLINGEGKVETR--SDEGNRGRNSLGQHFSEEEIN-NLQIVKKQHHDGLQGVK 128
           N+HKSLKQL+N E K ETR   DEG+RGRNSLGQHFS+EE+N NLQIVKKQH DGLQGVK
Sbjct: 71  NEHKSLKQLMNEEEKAETRLGEDEGSRGRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVK 130

Query: 129 LKKVVGKFLRNLIKGGGDQRQLMKKPIRNKSFL 159
           LKKVVG FLR+LIK GGD+ QL KKP + KSFL
Sbjct: 131 LKKVVGNFLRSLIK-GGDKHQL-KKPTK-KSFL 158

The following BLAST results are available for this feature:

BLAST of Clc09G03890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896195.1	3.0e-65	88.00	uncharacterized protein LOC120084478 [Benincasa hispida]	[more]
XP_011659480.2	1.5e-56	79.75	uncharacterized protein LOC105436185 [Cucumis sativus]	[more]
XP_008461224.1	4.8e-55	80.13	PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo] >KAA0058672.1 unc...	[more]
KAE8646415.1	3.1e-54	78.06	hypothetical protein Csa_016003 [Cucumis sativus]	[more]
XP_022959694.1	5.7e-48	77.85	uncharacterized protein LOC111460691 [Cucurbita moschata]	[more]

BLAST of Clc09G03890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G03890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7US55	2.3e-55	80.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFF2	2.3e-55	80.13	uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=...	[more]
A0A0A0KBK8	3.4e-54	79.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1	[more]
A0A6J1H8U7	2.8e-48	77.85	uncharacterized protein LOC111460691 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1KW04	3.6e-48	77.12	uncharacterized protein LOC111497689 OS=Cucurbita maxima OX=3661 GN=LOC111497689...	[more]

BLAST of Clc09G03890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03890.1	Clc09G03890.1	mRNA