Clc09G03800 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTACCAAAGGAAATAACGGAAAGGTGGAACAAAGCGCTTTATTTTGAAGCAGTGGAAGTGTTTTGTCCATTCAAGGATTGCTCCGAGGGAATGATCCTTGAGAAGGAAGCAACGGGCGGAGGAGGCAAATTACGGGATTGTGAATGTCCGTTTTGCCATAGGCTGTTCTGCGCCACGTGCAAAGTCCCATGGCACGAGGGGATCACGTGCGACGAATACCAGACGCTTTATCAAGCAGATCAGAGGGGTAGAGACGACATTTTGATGAAAATGTTGGCCTCCAAAATGAAAAGATGA ATGCTACCAAAGGAAATAACGGAAAGGTGGAACAAAGCGCTTTATTTTGAAGCAGTGGAAGTGTTTTGTCCATTCAAGGATTGCTCCGAGGGAATGATCCTTGAGAAGGAAGCAACGGGCGGAGGAGGCAAATTACGGGATTGTGAATGTCCGTTTTGCCATAGGCTGTTCTGCGCCACGTGCAAAGTCCCATGGCACGAGGGGATCACGTGCGACGAATACCAGACGCTTTATCAAGCAGATCAGAGGGGTAGAGACGACATTTTGATGAAAATGTTGGCCTCCAAAATGAAAAGATGA ATGCTACCAAAGGAAATAACGGAAAGGTGGAACAAAGCGCTTTATTTTGAAGCAGTGGAAGTGTTTTGTCCATTCAAGGATTGCTCCGAGGGAATGATCCTTGAGAAGGAAGCAACGGGCGGAGGAGGCAAATTACGGGATTGTGAATGTCCGTTTTGCCATAGGCTGTTCTGCGCCACGTGCAAAGTCCCATGGCACGAGGGGATCACGTGCGACGAATACCAGACGCTTTATCAAGCAGATCAGAGGGGTAGAGACGACATTTTGATGAAAATGTTGGCCTCCAAAATGAAAAGATGA MLPKEITERWNKALYFEAVEVFCPFKDCSEGMILEKEATGGGGKLRDCECPFCHRLFCATCKVPWHEGITCDEYQTLYQADQRGRDDILMKMLASKMKR Homology
BLAST of Clc09G03800 vs. NCBI nr
Match: TYK10490.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]) HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 0
BLAST of Clc09G03800 vs. NCBI nr
Match: KAA0058684.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]) HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29 Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. NCBI nr
Match: KAE8646419.1 (hypothetical protein Csa_016113 [Cucumis sativus]) HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28 Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. NCBI nr
Match: XP_008461214.1 (PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Cucumis melo]) HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28 Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. NCBI nr
Match: KEH43916.1 (C6HC-type zinc finger RING/U-box protein [Medicago truncatula] >RHN82080.1 putative IBR domain, E3 ubiquitin ligase RBR family [Medicago truncatula]) HSP 1 Score: 117.1 bits (292), Expect = 8.7e-23 Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy Swiss-Prot
Match: Q8BKD6 (E3 ubiquitin-protein ligase RNF144B OS=Mus musculus OX=10090 GN=Rnf144b PE=2 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 2.2e-05 Identity = 20/68 (29.41%), Postives = 35/68 (51.47%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy TrEMBL
Match: A0A5D3CGK1 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001400 PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy TrEMBL
Match: A0A5A7UU31 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001540 PE=3 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29 Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy TrEMBL
Match: A0A0A0K9X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430760 PE=3 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 8.8e-29 Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy TrEMBL
Match: A0A1S3CDQ5 (probable E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo OX=3656 GN=LOC103499864 PE=3 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28 Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of Clc09G03800 vs. ExPASy TrEMBL
Match: A0A072VQJ6 (C6HC-type zinc finger RING/U-box protein OS=Medicago truncatula OX=3880 GN=MTR_1g105450 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23 Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Clc09G03800 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein ) HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20 Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 0
BLAST of Clc09G03800 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein ) HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16 Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of Clc09G03800 vs. TAIR 10
Match: AT3G45470.1 (IBR domain containing protein ) HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10 Identity = 31/102 (30.39%), Postives = 51/102 (50.00%), Query Frame = 0
BLAST of Clc09G03800 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.2 bits (147), Expect = 5.3e-10 Identity = 30/100 (30.00%), Postives = 57/100 (57.00%), Query Frame = 0
BLAST of Clc09G03800 vs. TAIR 10
Match: AT4G19670.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09 Identity = 28/86 (32.56%), Postives = 43/86 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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