Clc09G03785 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03785
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nuclear pore complex protein
Location	ClcChr09: 2905116 .. 2906755 (-)
RNA-Seq Expression	Clc09G03785
Synteny	Clc09G03785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCTCTCGTGTTAGGGCTCGGAAAAGTGGTCAGTCTCTTATTACTCTTCCTCTTTCGGCCTTTCCATCCTTTTTCCCTTCTAAATCGGAGTTTGGTTATGCCTAAATTTTTTCGAATGTGATGATCTCGACTAAATGAATTGCTTCTGATTGATGGAATTCCTGTATTTCTGTTTCCATTAGTTTTCTCCGGTTTCTTATTTTCTTTTTCTGAACTGTGTGCTGCCATTTGAAGAAGAATTTGTATGTAACTTCATCTACAGTTAATTTCCTGCATAAGATTATGATATGTGATCATCGGAAGAGATTCTTGTTCTTGATTCGTCATGAGAGGAAAATAGTGTAAGAAATTTGTAAAATATGAGAGGATCCACCTAGGTTTCTAATACAGATTTCTTAGTCTTTTTTTTTTTAATAATTTTTTTTTAATGCTTTTAACGGACTTTGAATATGTTATATAACACCTTGATCTGTATGCAACGTATAATCTCAATTCCCAACCACTACGATAGAGAAAGAGAGAGAGAAAGTTGATTCTAGAAGGGCAATAAATGGCCATGTGATTATTCAACCTCTACAGTACAGTAATTTGTTAGGAAAAATCACAAGAAGTCCATAGGCATACATACAACATATACTCCAATTTCTCCAAGTGTTTCAAATTCCCCAAAATTATCACCAAATATGGACATCAAATCCCTTTAATTTAGGAATTTTGGTTTACAAGCTAGGTGTTTCCATGAGCATAATTTTGTTTTTCAACTAAGATATTTATCCCATGAAATTCCCCACTGGCATTGCAGTTGAAGACAGAGTGAAAGATTAGAGCCCACTTTTAAGATTAAAAGTTTTTTTTTTTTAATTTTTTTAAATTTTAATAACAGCTTTGATTGTCCTTTTGTGATTCTTTATAGTCATAATCCCACTTAAGACTAACAATGGCCACTAGTGCCCTTTACTTTTCGACTAGTGGTGACCCAATTTGATTTGTTTTTGCCTTCTATTACTATTATAAAGCCAAGGCGTGGCCTGGCTTGGCCTTGCCGTCTCTTAGACTTTTATTATTCTTATTAGTTCTGCCCAAGTTGCTTTTATTGACAATTTGACTAGCACCACAAATTTCCTCTACCCTTTTCAGTATATTCACATCCCAATGTTTGTGTATAATATTGTGTGTGTGTATATATATGCATAGAGAGAGAGAAAGCTCAAGTTGAATGGTAGGTCATTCATCATGTCCCTTTAGATGGGCTGGGCCCAAATTAGGCCCATGAGATTCTGAATTTGTCATGTGGATGTCCCTTGAGATTTCTTATTACATGAAGTGTACTAAAATGCTCTTTAGAAAGCTAAGCTAAAGCAATTGTGTGATTTTTGCTGGTAATAGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCTGAGTCTGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACTGTTTTGGAGAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCTTCTTACACTGCAACACATGCATGA

mRNA sequence

ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCTCTCGTGTTAGGGCTCGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCTGAGTCTGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACTGTTTTGGAGAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCTTCTTACACTGCAACACATGCATGA

Coding sequence (CDS)

ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCTCTCGTGTTAGGGCTCGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGATGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCTGAGTCTGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACTGTTTTGGAGAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCTTCTTACACTGCAACACATGCATGA

Protein sequence

MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

Homology

[Close]

BLAST of Clc09G03785 vs. NCBI nr
Match: XP_038900267.1 (uncharacterized protein LOC120087349 [Benincasa hispida])

HSP 1 Score: 190.3 bits (482), Expect = 7.6e-45
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          VGHQPKRKQR FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. NCBI nr
Match: XP_016902643.1 (PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 3.8e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          V HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. NCBI nr
Match: XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia])

HSP 1 Score: 187.6 bits (475), Expect = 4.9e-44
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          VGHQPKRKQR FWRVSVWSNHAAAASS+TATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of Clc09G03785 vs. NCBI nr
Match: KGN45194.1 (hypothetical protein Csa_015637 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 8.4e-44
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          V HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. NCBI nr
Match: XP_023548962.1 (uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWL VS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          VGH+PKRK R FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. ExPASy TrEMBL
Match: A0A1S4E346 (uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          V HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          VGHQPKRKQR FWRVSVWSNHAAAASS+TATHA
Sbjct: 61 VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of Clc09G03785 vs. ExPASy TrEMBL
Match: A0A0A0K8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.1e-44
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          V HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. ExPASy TrEMBL
Match: A0A6J1JS76 (uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.9e-43
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWL VS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWE+LRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEILRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA 94
          VGH+PKRK R FWRVSVWSNHAAAASSYTATHA
Sbjct: 61 VGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Clc09G03785 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.7e-43
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
          MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 VGHQPKRKQRLFWRVSVWSNH---AAAASSYTATHA 94
          V HQPKRKQR FWRVSVWSNH   AAAASSYTATHA
Sbjct: 61 VSHQPKRKQRPFWRVSVWSNHAAAAAAASSYTATHA 96

[Close]

BLAST of Clc09G03785 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  ELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSES-EL 61
          E W+ M FP RR+W   + RV  R S  GLL+L  DV +C YED+ +MW +L ++E    
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHS--GLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTR 67

Query: 62 VGHQPKRKQR 71
          V  Q +++QR
Sbjct: 68 VPIQQQQQQR 75

The following BLAST results are available for this feature:

BLAST of Clc09G03785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900267.1	7.6e-45	97.85	uncharacterized protein LOC120087349 [Benincasa hispida]	[more]
XP_016902643.1	3.8e-44	96.77	PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo]	[more]
XP_022143553.1	4.9e-44	95.70	uncharacterized protein LOC111013423 [Momordica charantia]	[more]
KGN45194.1	8.4e-44	95.70	hypothetical protein Csa_015637 [Cucumis sativus]	[more]
XP_023548962.1	4.2e-43	94.62	uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc09G03785 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G03785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E346	1.8e-44	96.77	uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=...	[more]
A0A6J1CR01	2.4e-44	95.70	uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0K8I7	4.1e-44	95.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1	[more]
A0A6J1JS76	5.9e-43	93.55	uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437...	[more]
A0A5A7UWX2	7.7e-43	93.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc09G03785 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	2.5e-09	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 2..88
None	No IPR available	PANTHER	PTHR33181:SF19	OSJNBA0041A02.21-LIKE PROTEIN	coord: 2..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03785.1	Clc09G03785.1	mRNA