Clc09G03560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	ClcChr09: 2716476 .. 2722069 (+)
RNA-Seq Expression	Clc09G03560
Synteny	Clc09G03560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATACAAATGAAAAAAATTGTAATTGCAGCAAAGTCTACTCAATTATACCAGTAATCACCGTTATCCACATTCCAAGAAGTTGAGGGGGCTTATGCAAATATTCTAGAAGAGAGAGGATCCGCGGGAAAAAATCATAGAGTGGCGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTGTCTTTTCCCCGGCGACTGAACTTCCACTGAGAACTTCAGAACTTCAGAACTTCAGAGAGCTTAGCCATGGCGATCATGGCGTTTCTCTCTTCACCACCGCACATTCCCTCTCTGTCTCGGCCGTTTCACTGCAACTTTCTCTTCTCTCCCATTTCTCCTTCCTTCAGTGCACTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTGGCGACTTCGGGATTTTGCTTTAGGATACACTGTCGTGACAAAGAACGAGCTGCGCCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTCGAGGATGGAGAGATCCGCTTGGAGATTGATTTTCCGTAATCTTTCTTTTTCTCCATTAATATTGACGGTCTTACTTCTCAGTCCTAATAGGCTCTTTCATTTGAGAAATACTGTTCATTCCTGTAATTTGTTACTTAGCGAGTTAGCGTTAGCGTTACTACTACCATGCTGTACGTTTGTTTTCGCTTCTTCTAATCCCCCTGCCCGAGTATCATAATCGGTTGTGCGTTTGTTAAGATAATCTGGTGGGTTTTATTTCAGTTTTATTTGAAACTGAGATTCCAACCGTAGTCCGTTTAAGTAAATTGTTTCTGAATAACCTTGCAGCTTATAAGAAGTAACAACCTCCTTTGCTTTAGCGTCGGAATGTGGCTTATTCTGGAATTTATTAGTTAGTTCTTCAGAGTATAATTCTCATTAGTTTCTAACCCTCGTTTTGTTTTTCGTTTTTTCCTTTTTGGTGGGATTTCCTATATTCAGACCCCTGCCTAGCAACATTTCCTCGTATAAGGTATCTTTCTCTAACATGTTTTTAATGGAATTTGCCGCTCAGAACATTATATTCTTTCATTTATTAAAATATTCCTCATATAGGCCTTTTTTCCCCCTCTGCATATGGAAATCCAGTCTGTTTTGCACCTCAATGTGTTACATTGAGTGCAGATTATCATTTGAATCATGTTCAGATTTCTGCATATTCTGGTACTTTGATACCACATTTTCCCCTCTTTTCTTGAGGATATTTTTAAATATGCAAAGGGTCCTTGCTTGATTTTATTGATCCAAATAATCAACTTGCAACGAACCTCAAAGAAAAGAGGGGAAACTAGACCTGCTTAAATATTTAGTTGTTCATCATGAATCTTCAATCGATGTACCTTGCAGCTTGTATTAGTTCTCCATTATTAATGTACTCAGTTAACATAGGGTCGTTATACAGTATGTCCAAAGATTTTATGTTTGTGTATTTTTCTTGTATGAGCTAACCATGAATAAAGAATATAGTATTCTGTGAATAGTATACCTTGAGATATAGGTTAATTAAATGCCTTCACCGAGATTTGACACTTGATGTACTAGAGTATGGGTTACATTCAAAACTTTGTTGGTTTAGGTTCTTTTCAATATTCTGGATTGTTGATAGCGCATGTTCATTTGATTTGAGAAAATTTCTAAATATGTCAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAATTGGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTAAGCAACTATATATATACATGTATATATTGCGAACCTCTTCTGAAGTTTGTGCAGCTGTTGAAAACTCGTGTTATATCTCTAGGTGTTCCCAGATAAGCCAGAGAAGCGCAGAGCTTCAGAGTTGTTCAAAACAGCTCTTGACTCGGTAACAAGTTAACTCTTCAAACTTCTTTGTTTTGCCTTGTTGGTAAGAAGTAAATGTTTCGTAGTAAGAGTACCAAAAGAGAGGGAAAATGCAAACCAAGTGAAAAAAGATTGCGCAGAAACTCTCTGGTTGTCAACTTGTCATTAGTTGGTTAAATAAATAATTCTGGAGGATCTGGAAATAGCACTCCAAGGACGTCCTAAAGATTTGAAAAAAAATTCTATCTACTCCATGGAAAATTCTCCTATTTGTCTCAAGTCAGTCCTTCCATAGATAGTGAAAAGAGCATCCACCCGAAGCCACAACTGCTTCATTTTAAAGGGGGTTATCTATATTTCTTTCTTTTTTTTTAATCTTTTTTTAATCTTTTTTTTTAAATATATTTTTTCCCACCATGATGAGGCTCTTTATTAGCTTGTGGCATTGTCCATAAAGAAAAGGCACAAGTTTAAGGTTTCGGCTTAGGTATTACGAGAAATGTACTGGATAAATGAAGATTGCAAACAACTCAAACCTAGAAAGTGAGTGGTTTCAGGTCTGCGTATACTAAGCAGCAAAGGTACTCATGCATTTGAAATTGTTTGGGCCACTTAGAACGTTAAATATCCAGTATCTTCTGGCTAACAAACATTTTATAGTCACGTAGAATAGTTGAAAAATAAAGAAATAATCTGGCGACGCAATATAATTATTAGTAATAAATGATGTGAGCTAATCGAAGGCACGCTTGTCCACAGAATATAAATCTTGGTCTCCGTTTTATTTGCTCATTTGATTTTGTTTTTCCCTTTTGGCTTTCAGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTCCCTGCTGGACCTGTCACATCTTTCTTCAGATCCGTTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTTGGTTCTATACGCATGGATCTCAGAAGATGTTTCACTTTCTTGTCCTCTTTTTTTTTATTCTGTGCATGTCATGGCCATGTGTTTCAAATGCGTTTTGCAAATATATGACACATTTCACGTGACCCTAACCATTATGGCAAGACTGAAACTTACATTCATAAACTGTAATAAACTTATTTAGACAAGGAAAATGACTGGCAAAAAAGAAAGAGCCAAAGGGAAGAAAAAATTAACGAGAGAAAAAAAGAAAATGAAAAAGAAATACTATGATTGAACTTAATCCTCATATGAGAACATTATTTATAAACTTAAAACTGCCTCTTCCTATGTATTTCACTTCACTTTTGTGGATATAAACATGTTTCTTCTTCTTCAGCTTGTCTGTATATGTTATAGTGTAATCATCTTTTATTCTTTAACTGCTTCTTTCCAGGGCCAACATTCTCATTTAATGATTTCTCACTCTTTGCAATCCATCTGATTTGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGTATGATGTCTATGCTAATTGCAAGATAGCAATTTTTGAACCTATGGCATACCTTGATTAGCACTGATTAAAAGTTCTCATGATTTCTTCTCTAATTGGTTATGTTGTGCTAATTTCTGTTTTTTTCAGTACAAATTATAATTTGTCTTAAAAAGTATTCCTACTATTGATTATGATTCAGCTGTCTACTGAATACTGATATTTTAGGGGACATGGGGTAAATTCTTATAATTGTTACCATTATATAAGTGGGATCTTTCATGGTGGGATCGATAACTTTTTCTCTAACTTACTGAGCACATACTGCGTAAGCCTATTCATGGCTTTCCAAGTGACATTTTTTTCACATAATAAGTTGTGTTTTTTAGTTAACTTCATCTGGCTTAGTCCAATTGGTTCTTGCCTGTACACAATAAGGTGACTCATTTTGGGATTTGCAGGAAACTTTTGCTTCATCAATCCCCACCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGACCTCCTCCTCGTCCATCTTTGATAGATATTGGGTTCATATATATGCAACTATTGATCAGAAGTTTGTAAACTTACAGTGCGGACTTGGGCTTGCTGGGATTTCCCCCCAAAGATTTGCACTATCGATTTCTCTCTCAGTTTATTCCAGTGTTCTACATACGAATCAGAGAGTATTCTAAGGTCTCGGATCTCATCTTGGAACCCTTTTAAATTTTCTTATATTTATATTTTGACTAAATTCTCTATTCTTGGTTCTCTTTGTGGGGAGGGATACTAAGACAGTAGCAATAGCACCTTATATTGTTAATTATAGTGGAGCATTGTTTCGTCAATACCCTGGTACGTGTACTGTTTTATTGAACTTTCTGTTAAATTTGTTTTTTAGTTCTCTTGATATCTTTCTCGGTCCAAATTGGTTCACCTCCCTCATAAGTTTCGCTAGCTAATTTTTTAGATTCATCTGCTTTTTAACAAAAATCTGTTGCCATTTCTAATCATCCTTCATAATACTTTCAGGACCTTGGCAAGTGATGCTAAAACAATCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAGTATGTAAAACTTACTTTAAACTTTTGTCTGGTGTTAAACATTTGCTGTTGCTTGTAATTTAGACTAACTGTTGTTTGTAATTTAGACCAAAGATGAACTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGTTTTCTCTTATATCTGTGATTCTATTTTATATCTTTCCTTCTATATGGTGTGAACTTATTGCTAATTTTTCTTGTATTACTAAATTCTTATTTGCTTCCCCACCAACCAACCTGAAATTTGAAGAGAAATGAGCTTCATATTGCTGCCTATGTTTTTTATTCAGTGAAATGATCCTTTATGAAGCTAACACATAATCGTATTAGTAAAATTATGGGAGTGTTGAAATCTAGTCTACTTTTGCAGGCTGCCACTTGGTGGGAAGAAGACGTTGACTCTGAAGTATCTTCAGCATGGCGTAGTTGAGCAGCTTGAGTATCGATTATTTCCTCCTCGTATCTTCATAAACACAACATCGATGACATCGGACATGAGATGCCAACCATATTTCCTTGTTCAAACGGATGGCTCTTTCTAAAAGACTCTCATGGCCTCTCTTTAAACAATTACTGCAGGGAAATTCTATCTCAAAGTTAAATCTACATCTCTTTTCAACCCACCAGCTTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAATTCAAGGTGAAGTAATCTTGTACATTTTATAACTCAGCGATAAATTATGATGTGTTGTTCATCTTGATACCGAGTTTCATTTTCTTTTTCACTCATTCCTTCAAAAAATATAAATTCTCAGATGGTTTGATCCTTGTCAAGAATGAAGTTCAACTATTTTCATGCATCCATAATATGTAGGATCATCCAAACCATTACACTACTTGTTTTGGAAAGAAAATAAAAGCAATTGCTTTGGACTAAAAGCTAATTATTGTTTATAAACTTTACATTCAAACATTATCCTCAA

mRNA sequence

ATGAAATATACAAATGAAAAAAATTGTAATTGCAGCAAAGTCTACTCAATTATACCAGTAATCACCGTTATCCACATTCCAAGAAGTTGAGGGGGCTTATGCAAATATTCTAGAAGAGAGAGGATCCGCGGGAAAAAATCATAGAGTGGCGTCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTGTCTTTTCCCCGGCGACTGAACTTCCACTGAGAACTTCAGAACTTCAGAACTTCAGAGAGCTTAGCCATGGCGATCATGGCGTTTCTCTCTTCACCACCGCACATTCCCTCTCTGTCTCGGCCGTTTCACTGCAACTTTCTCTTCTCTCCCATTTCTCCTTCCTTCAGTGCACTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTGGCGACTTCGGGATTTTGCTTTAGGATACACTGTCGTGACAAAGAACGAGCTGCGCCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTCGAGGATGGAGAGATCCGCTTGGAGATTGATTTTCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAATTGGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTGTTCCCAGATAAGCCAGAGAAGCGCAGAGCTTCAGAGTTGTTCAAAACAGCTCTTGACTCGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTCCCTGCTGGACCTGTCACATCTTTCTTCAGATCCGTTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCATCAATCCCCACCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTGCTGGGATTTCCCCCCAAAGATTTGCACTATCGATTTCTCTCTCAGTTTATTCCAGTGTTCTACATACGAATCAGAGAGTATTCTAAGACAGTAGCAATAGCACCTTATATTGTTAATTATAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGCTAAAACAATCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACCAAAGATGAACTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGACGTTGACTCTGAAGTATCTTCAGCATGGCGTAGTTGAGCAGCTTGAGTATCGATTATTTCCTCCTCGTATCTTCATAAACACAACATCGATGACATCGGACATGAGATGCCAACCATATTTCCTTGTTCAAACGGATGGCTCTTTCTAAAAGACTCTCATGGCCTCTCTTTAAACAATTACTGCAGGGAAATTCTATCTCAAAGTTAAATCTACATCTCTTTTCAACCCACCAGCTTCAGAAGATTGACACAAACTTGAATCCAACTCATTCACCTCTGGAATTCAAGGTGAAGTAATCTTGTACATTTTATAACTCAGCGATAAATTATGATGTGTTGTTCATCTTGATACCGAGTTTCATTTTCTTTTTCACTCATTCCTTCAAAAAATATAAATTCTCAGATGGTTTGATCCTTGTCAAGAATGAAGTTCAACTATTTTCATGCATCCATAATATGTAGGATCATCCAAACCATTACACTACTTGTTTTGGAAAGAAAATAAAAGCAATTGCTTTGGACTAAAAGCTAATTATTGTTTATAAACTTTACATTCAAACATTATCCTCAA

Coding sequence (CDS)

ATGGCGATCATGGCGTTTCTCTCTTCACCACCGCACATTCCCTCTCTGTCTCGGCCGTTTCACTGCAACTTTCTCTTCTCTCCCATTTCTCCTTCCTTCAGTGCACTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTGGCGACTTCGGGATTTTGCTTTAGGATACACTGTCGTGACAAAGAACGAGCTGCGCCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTCGAGGATGGAGAGATCCGCTTGGAGATTGATTTTCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAATTGGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTGTTCCCAGATAAGCCAGAGAAGCGCAGAGCTTCAGAGTTGTTCAAAACAGCTCTTGACTCGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTCCCTGCTGGACCTGTCACATCTTTCTTCAGATCCGTTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACATCTAGTGACCCTCCATCTTTGTATATATTCATTAATTGTAGCACGCGTGAACTTGGTTTGATAGAGAAGTATGTGGAAACTTTTGCTTCATCAATCCCCACCCTGTTGTTTAATCTAGAACTTGAAACCTTGCGTGCGGACTTGGGCTTGCTGGGATTTCCCCCCAAAGATTTGCACTATCGATTTCTCTCTCAGTTTATTCCAGTGTTCTACATACGAATCAGAGAGTATTCTAAGACAGTAGCAATAGCACCTTATATTGTTAATTATAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGCTAAAACAATCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACCAAAGATGAACTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCACTAGAATTTCTCCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGACGTTGACTCTGAAGTATCTTCAGCATGGCGTAGTTGA

Protein sequence

MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIHCRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS

Homology

[Close]

BLAST of Clc09G03560 vs. NCBI nr
Match: XP_038900014.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 758.4 bits (1957), Expect = 2.9e-215
Identity = 378/391 (96.68%), Postives = 385/391 (98.47%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAF+SSPP IPSLSR FH NFLFSPIS SF ALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFVSSPPQIPSLSRSFHSNFLFSPISSSFCALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           CRDKER +PVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG+IRLEIDFPPLPSN
Sbjct: 61  CRDKERTSPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN+GRWTSSDPPSLYIFINCSTRELGLIE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENSGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. NCBI nr
Match: XP_022992481.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 751.5 bits (1939), Expect = 3.6e-213
Identity = 372/391 (95.14%), Postives = 383/391 (97.95%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL RPFH NFLFSPIS SFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           IT+SSLDD+PAGPVTSFFRS+RNTLDFDFEDENAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. NCBI nr
Match: KAA0058708.1 (protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK10514.1 protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa])

HSP 1 Score: 751.1 bits (1938), Expect = 4.7e-213
Identity = 376/391 (96.16%), Postives = 384/391 (98.21%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAFLSSPP+IPSLSRPFH NFLFSPIS   S+LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFLSSPPYIPSLSRPFHSNFLFSPIS---SSLRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           CRDKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTA+DSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           ITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NAGRWTSSDPPSLYIFINCSTRELGLIE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Clc09G03560 vs. NCBI nr
Match: XP_022954402.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 750.7 bits (1937), Expect = 6.1e-213
Identity = 372/391 (95.14%), Postives = 383/391 (97.95%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL RPFH NFLFSPI+ SFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           IT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. NCBI nr
Match: KAG6575630.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 748.8 bits (1932), Expect = 2.3e-212
Identity = 372/391 (95.14%), Postives = 382/391 (97.70%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL RP H NFLFSPIS SFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           IT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. ExPASy Swiss-Prot
Match: Q8H0W0 (Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 2.0e-150
Identity = 258/353 (73.09%), Postives = 302/353 (85.55%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCRDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGEIRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D + RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPEKRRASELFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWT 222
           PDKPEKRRAS+ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G W 
Sbjct: 130 PDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWE 189

Query: 223 SSDPPSLYIFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHY 282
             +PP+LYIFINCSTREL  IEK+VETFASS P LLFNLEL+TLRADLGLLGFPPKDLHY
Sbjct: 190 PKEPPTLYIFINCSTRELSFIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHY 249

Query: 283 RFLSQFIPVFYIRIREYSKTVAIAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESE 342
           RFLSQFIPVFYIR REYSKTVA+AP+++NY+GALFRQYPGPWQVMLKQ+D S+ACVAES 
Sbjct: 250 RFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESP 309

Query: 343 TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Sbjct: 310 TRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Clc09G03560 vs. ExPASy TrEMBL
Match: A0A6J1JTN7 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488800 PE=4 SV=1)

HSP 1 Score: 751.5 bits (1939), Expect = 1.7e-213
Identity = 372/391 (95.14%), Postives = 383/391 (97.95%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL RPFH NFLFSPIS SFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           IT+SSLDD+PAGPVTSFFRS+RNTLDFDFEDENAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. ExPASy TrEMBL
Match: A0A5A7UU42 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001640 PE=4 SV=1)

HSP 1 Score: 751.1 bits (1938), Expect = 2.3e-213
Identity = 376/391 (96.16%), Postives = 384/391 (98.21%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAFLSSPP+IPSLSRPFH NFLFSPIS   S+LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFLSSPPYIPSLSRPFHSNFLFSPIS---SSLRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           CRDKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTA+DSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           ITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NAGRWTSSDPPSLYIFINCSTRELGLIE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Clc09G03560 vs. ExPASy TrEMBL
Match: A0A6J1GQW6 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456648 PE=4 SV=1)

HSP 1 Score: 750.7 bits (1937), Expect = 3.0e-213
Identity = 372/391 (95.14%), Postives = 383/391 (97.95%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL RPFH NFLFSPI+ SFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           IT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Clc09G03560 vs. ExPASy TrEMBL
Match: A0A1S3CFB8 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499841 PE=4 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 3.3e-212
Identity = 374/391 (95.65%), Postives = 383/391 (97.95%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAF+SSPP+IPSLSRPF  NFLFSPIS   S+LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFISSPPYIPSLSRPFQSNFLFSPIS---SSLRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           CRDKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTA+DSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           ITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NAGRWTSSDPPSLYIFINCSTRELGLIE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Clc09G03560 vs. ExPASy TrEMBL
Match: A0A0A0KA03 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=4 SV=1)

HSP 1 Score: 738.8 bits (1906), Expect = 1.2e-209
Identity = 371/391 (94.88%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLSRPFHCNFLFSPISPSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLS PFH NFLFSPIS   S+LRRSTRSSLFGAQTLA SGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLSPPFHTNFLFSPIS---SSLRRSTRSSLFGAQTLAASGFCFRIH 60

Query: 61  CRDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSN 120
           C DKERAAPVT+ SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDG++RLEIDFPPLPSN
Sbjct: 61  CLDKERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTALDSIDG 180
           ISSYKGSSD+FIDANIQLALAVARNLQEKRG RSCIVFPDKPEKRRAS+LFKTALDSIDG
Sbjct: 121 ISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDG 180

Query: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSSDPPSLYIFINCSTRELGLIE 240
           ITVSSLDDVPAG VTSFFRSVRNTLDFDFED+NAGRWTSSDPPSLYIFINCSTRELGLIE
Sbjct: 181 ITVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300
           KYVETFASSIP LLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA
Sbjct: 241 KYVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQY GPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYAGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Clc09G03560 vs. TAIR 10
Match: AT1G73060.1 (Low PSII Accumulation 3 )

HSP 1 Score: 533.5 bits (1373), Expect = 1.4e-151
Identity = 258/353 (73.09%), Postives = 302/353 (85.55%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCRDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGEIRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D + RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPEKRRASELFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWT 222
           PDKPEKRRAS+ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G W 
Sbjct: 130 PDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWE 189

Query: 223 SSDPPSLYIFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHY 282
             +PP+LYIFINCSTREL  IEK+VETFASS P LLFNLEL+TLRADLGLLGFPPKDLHY
Sbjct: 190 PKEPPTLYIFINCSTRELSFIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHY 249

Query: 283 RFLSQFIPVFYIRIREYSKTVAIAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESE 342
           RFLSQFIPVFYIR REYSKTVA+AP+++NY+GALFRQYPGPWQVMLKQ+D S+ACVAES 
Sbjct: 250 RFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESP 309

Query: 343 TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 392
           TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Sbjct: 310 TRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Clc09G03560 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-11
Identity = 88/350 (25.14%), Postives = 151/350 (43.14%), Query Frame = 0


Query: 29  ISPSFSALRRSTRSSLFGAQTLATSGFCFRIHCRD----------KERAAPVTRSSDPKA 88
           +SPSFS     + +SL G     +      +H ++          K RA  V+   +   
Sbjct: 1   MSPSFSIATTVSPASLAGTLASNSKNVLCSLHSKNNDITKTNRNLKFRACSVSGGYNNNT 60

Query: 89  GVP-IYKPKTYEVLVSDAANSLAYALEDGEIRLEIDFPPLPSNISSYKGSSD---EFIDA 148
            V  +  P+ Y  L++ A  ++  AL+D +  +EI+FP   S ++S  G  +   E  ++
Sbjct: 61  SVDNVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFP--TSGLASVPGDGEGATEMTES 120

Query: 149 NIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASE-LFKTALDSIDGITVSSLDDVPAGP 208
              +     R L  ++   + I FP+  E + A + +F      +D +T  SL +     
Sbjct: 121 INMIREFCDRLLAPEKARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKPSLFE----- 180

Query: 209 VTSFFRSVRNTLDFDFED--ENAGRWTSSDPPSLYIFINCSTRELGLIEK-YVETFASSI 268
                       DF F +  + A R    D   L  +   +  E+ ++E+ Y E   ++ 
Sbjct: 181 ------------DFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTD 240

Query: 269 PTL-LFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKT----VAIAPYI 328
             L +FN EL+ +R+     G+ PK             FY ++   +KT    +    YI
Sbjct: 241 RKLIIFNGELDRIRS-----GYYPK------------FFYPKLAALTKTLLPKMETVYYI 300

Query: 329 VNY----SGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELL 352
            N+     G LFR YPGPWQV L+++ N Y CV + E+  +L E   ++L
Sbjct: 301 HNFKGQKGGVLFRCYPGPWQV-LRRTRNKYICVHQQESMPSLKEVALDIL 313

The following BLAST results are available for this feature:

BLAST of Clc09G03560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900014.1	2.9e-215	96.68	protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida]	[more]
XP_022992481.1	3.6e-213	95.14	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
KAA0058708.1	4.7e-213	96.16	protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK10514.1 protein L...	[more]
XP_022954402.1	6.1e-213	95.14	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
KAG6575630.1	2.3e-212	95.14	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Clc09G03560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0W0	2.0e-150	73.09	Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1	[more]

BLAST of Clc09G03560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTN7	1.7e-213	95.14	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7UU42	2.3e-213	96.16	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1GQW6	3.0e-213	95.14	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A1S3CFB8	3.3e-212	95.65	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KA03	1.2e-209	94.88	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=...	[more]

BLAST of Clc09G03560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73060.1	1.4e-151	73.09	Low PSII Accumulation 3	[more]
AT5G48790.1	1.3e-11	25.14	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 85..347 e-value: 2.4E-49 score: 168.1
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 52..391
None	No IPR available	PANTHER	PTHR34051:SF2	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 52..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03560.1	Clc09G03560.1	mRNA