Clc09G03550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	ClcChr09: 2712474 .. 2715981 (+)
RNA-Seq Expression	Clc09G03550
Synteny	Clc09G03550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGCTTATCCAAATCCAAACCTTCCTTCCACACATTCTGAAGATCACATTGCCTAAACGTTATGGAATTTCAATCCAAATCCCCCAAGAAACTACCTCCCAACAGCCATCCATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTTCCCCACATCAGGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCTTTTTCTAGCCCCACCAGACATTTCTCTCTGCACTTCTTCCTCATCCTCTTCAAAACTTCAAATCCCCAGTTCCAAGAAGAATCCATGGCTCGACCCTTTCGACGACGGGGAGGATCCGGAGATGGAATACGGCTCTCTCTTCGCTGACGGGAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCGAACAATCCATATGGGTTCTTGAAATTTCCTCAGGGTTACATGGTGGAAATTGCTTCTCTGGGCCTCAAACTCCGGGGGGATGTGCGGCGGTGCTGCTGTGTGATCTCCGGCGGCGTCTATGAGAACCTTCTGTTCTTTCCGGCGATTCAATTGCTTAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGCAAACAGACTTACGAATTGAACAAGAATGTGCGATGGTCTAATGTATATGATCCGGATGATTATTTTCCTGAACCAGCAGAGTATACTGACATGGTTGGATTGCTCAAGGTTGGTTCATTTTCTCTCCAACAATTGACCTTTACTTTGGATAGAACGATATTGCTAGTGATTCTACACGGTTGGATGTATGACAGATTTTAAATATTGAGACCCTATAGAAACTTCTTTCAATAAATGGGCTAGACTGGGTCATTTCTCAAGAGCAATAGCTAGGGATCATGATACTTATACTTGGATATGGAACTTTCATGATGCTCATAATTTTGATAGTCATACTAGTGATTTGGAGAGATCTCTTAAAAAAATTATTGAGCGCCATCTTGGCCAACTCTCCAACATCTTTCTTTGACTGTGTGCAATGTATTTACGTAGTCCTCATTTTTCCAATTATGAAACATGACATTGGCCCTAGTGTCCAAGTGGTTTGGCGAATAGTGGGTCAAGAAATGTTGAATGGTGATGTAAGCTAGGGTTTTCAAGTTTGAACAATGGTTGTGGTAGGAAGTATTAGGGTGTTGATGGGATATTAAGGGTATGTTAGTAATTAGTTAGGGAGGTTGCTATGATATTTGGTCATAAATAAAGGAGAAGCTAGGCAATATTTTTGTGAGGGAATTAGGACTTGAGAGTAGTTTCAAAAAAGGAGGGTCCAAGAACCTCGAATTACTTTTGTTATTTTGTAGTTTGGTTATTGTTTATATTTCAATATATTGGGTTCTATCATGTTGTTACGGATAAATAAAATTTGAACCTGCACTAAACCATCATTAAGGCGGTCACATTGAATAATTTTGGGGTTTCCAGGGTTAAGCTTAAACTTAGTTAAGTGAGAATTGGAGAAATTGGGACTGATTTGAATGGTGTAACTGGTTTCATTGTTGTTGCAGGGTAGGTATTATGACATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGGCATGCTGTGTTTTTGTTTATGACAACAGCCAGAGACAGAGTGAGCTACATTTACCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTGAAACATTTAAACCAGATAGCTCTAATCTTTCTGAGGGAGGGTTCAACATGTCAGAATATTTTATGTTTTTTGTTATGAATTTGGACAAAAACTTTCGTATGAGCTTTTGAACTTAGTATTAGTTTGACATAGCATTGGAGTGGGAGTTACTTTATTGATAGTCACTCGCTGGTATGTTGTGCTTGTTTCCTAAGCCAGAAGGAGGGATGTCAAGAATGTATATATTCTGTAACTTATCAATATAAGCCTCTAGGTGTAGTATAAGACCATAATTTAATAGTTTAAGCTTTTAGGTTTAGTAGTAGTTTACTGTTTTAAATTCAGAAGAATTCAGTCACTAATCTCTTAGTTAACTCAAAATGTACAACCCTATACGATATGAGGAGCAGTTTTTTTGTCACTAAATGAGTGAAGTTTGGCTTTTATCAGAGGACAATAGTAGTTTGTGAAAACTTATGAACAAAAGAGAAATAGCTAGCTCAAACTTCTACCTTTTTGATGCCTGAAGGCTGATTTTCATGATTTAGGTATCATCAAATGGTTGATTGGTTAGGAAGGCCATTTCGCAGCGTTCCCAGGCATCCCGTTCCTCCACTTAAAGTCTCGATCTCGAGAAAATTGAAGGAGGTTGTAGCGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGTTTGCTACCCATTCAAGCCTGGGCGGAAATAGCCAATACTATAAAGTAGGTATTATGACAATATCTTGCTTCATCAGAAAAAAAAAAGGATGAATTATAGGCTTATACAAAGGACTGAAGGAAATAAAAAGTTACATGATGCTGCTTTTTCTTTCGCTATTTTCTGATGATAATGTTTATTGAATCTAAACACAGGGGATTCAAGCCAGTTTTTGTCATTCCACATGAAAAGGAAAGGGAAAACGTTGAGGAGGAGGTCAGAGATAATGCAAGCATCGTATTTATCACGACTCCAGGACAGGTATCCATAATGATCCATCTTTCTTTTTTAGTATTGAAGAGTAAACTGTAAAAGGATGATTACAAGAAACACAATATTAACTAAGAAAGCAAGGAAGAATGAAAGTGTGTACCTAAATACATCATTTTTAACTGCAATCTGCAGCTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGCTCCAACTCGCCATTGCTCGTGAAAAACCAAGGTTTTGATCTGTTTCTCCTTCACTAGTTTGCTTACCGATCTTAAAATCTTCCATCTGCTAGTAGTATGGAAAGAACTGTGCTTGACATGTATCTGTGGTGCCAATGTATTTGCAGCATTGCCTTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCCGACGCCGAAGCAAAGAGATGCATCACAGTTTCGTCAGCAACAGGACGACTGATCGACATCGAAATGGACACAGTTAAAAAGGCCATACAGAGTTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACAGTATAGATTTTTCTTACTCTATTTCTGCTTATCATCTTGATATTCTTTCATTTTGTTTCACCTTTGTTACCACCAGTTGTAAATCAAAGCATTGGCAATGAAGAAGAGTAATTGTATATGTTCTGTCTAGTGTAACTGTTCCTTTGTTTTCTTTATGAGTGGCTTGGTTTGGGAAACACCTAATATTGTTTTCCCCCTCCAAAACTAGCAACTGAATCTTCCTATACATTTTAAAACCAATTGGTTAATGTGTG

mRNA sequence

GAAGGCTTATCCAAATCCAAACCTTCCTTCCACACATTCTGAAGATCACATTGCCTAAACGTTATGGAATTTCAATCCAAATCCCCCAAGAAACTACCTCCCAACAGCCATCCATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTTCCCCACATCAGGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCTTTTTCTAGCCCCACCAGACATTTCTCTCTGCACTTCTTCCTCATCCTCTTCAAAACTTCAAATCCCCAGTTCCAAGAAGAATCCATGGCTCGACCCTTTCGACGACGGGGAGGATCCGGAGATGGAATACGGCTCTCTCTTCGCTGACGGGAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCGAACAATCCATATGGGTTCTTGAAATTTCCTCAGGGTTACATGGTGGAAATTGCTTCTCTGGGCCTCAAACTCCGGGGGGATGTGCGGCGGTGCTGCTGTGTGATCTCCGGCGGCGTCTATGAGAACCTTCTGTTCTTTCCGGCGATTCAATTGCTTAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGCAAACAGACTTACGAATTGAACAAGAATGTGCGATGGTCTAATGTATATGATCCGGATGATTATTTTCCTGAACCAGCAGAGTATACTGACATGGTTGGATTGCTCAAGGGTAGGTATTATGACATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGGCATGCTGTGTTTTTGTTTATGACAACAGCCAGAGACAGAGTGAGCTACATTTACCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTGAAACATTTAAACCAGATAGCTCTAATCTTTCTGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGAAGGCCATTTCGCAGCGTTCCCAGGCATCCCGTTCCTCCACTTAAAGTCTCGATCTCGAGAAAATTGAAGGAGGTTGTAGCGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGTTTGCTACCCATTCAAGCCTGGGCGGAAATAGCCAATACTATAAAGGGATTCAAGCCAGTTTTTGTCATTCCACATGAAAAGGAAAGGGAAAACGTTGAGGAGGAGGTCAGAGATAATGCAAGCATCGTATTTATCACGACTCCAGGACAGCTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGCTCCAACTCGCCATTGCTCGTGAAAAACCAAGCATTGCCTTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCCGACGCCGAAGCAAAGAGATGCATCACAGTTTCGTCAGCAACAGGACGACTGATCGACATCGAAATGGACACAGTTAAAAAGGCCATACAGAGTTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACAGTATAGATTTTTCTTACTCTATTTCTGCTTATCATCTTGATATTCTTTCATTTTGTTTCACCTTTGTTACCACCAGTTGTAAATCAAAGCATTGGCAATGAAGAAGAGTAATTGTATATGTTCTGTCTAGTGTAACTGTTCCTTTGTTTTCTTTATGAGTGGCTTGGTTTGGGAAACACCTAATATTGTTTTCCCCCTCCAAAACTAGCAACTGAATCTTCCTATACATTTTAAAACCAATTGGTTAATGTGTG

Coding sequence (CDS)

ATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTTCCCCACATCAGGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCTTTTTCTAGCCCCACCAGACATTTCTCTCTGCACTTCTTCCTCATCCTCTTCAAAACTTCAAATCCCCAGTTCCAAGAAGAATCCATGGCTCGACCCTTTCGACGACGGGGAGGATCCGGAGATGGAATACGGCTCTCTCTTCGCTGACGGGAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCGAACAATCCATATGGGTTCTTGAAATTTCCTCAGGGTTACATGGTGGAAATTGCTTCTCTGGGCCTCAAACTCCGGGGGGATGTGCGGCGGTGCTGCTGTGTGATCTCCGGCGGCGTCTATGAGAACCTTCTGTTCTTTCCGGCGATTCAATTGCTTAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGCAAACAGACTTACGAATTGAACAAGAATGTGCGATGGTCTAATGTATATGATCCGGATGATTATTTTCCTGAACCAGCAGAGTATACTGACATGGTTGGATTGCTCAAGGGTAGGTATTATGACATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGGCATGCTGTGTTTTTGTTTATGACAACAGCCAGAGACAGAGTGAGCTACATTTACCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTGAAACATTTAAACCAGATAGCTCTAATCTTTCTGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGAAGGCCATTTCGCAGCGTTCCCAGGCATCCCGTTCCTCCACTTAAAGTCTCGATCTCGAGAAAATTGAAGGAGGTTGTAGCGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGTTTGCTACCCATTCAAGCCTGGGCGGAAATAGCCAATACTATAAAGGGATTCAAGCCAGTTTTTGTCATTCCACATGAAAAGGAAAGGGAAAACGTTGAGGAGGAGGTCAGAGATAATGCAAGCATCGTATTTATCACGACTCCAGGACAGCTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGCTCCAACTCGCCATTGCTCGTGAAAAACCAAGCATTGCCTTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCCGACGCCGAAGCAAAGAGATGCATCACAGTTTCGTCAGCAACAGGACGACTGATCGACATCGAAATGGACACAGTTAAAAAGGCCATACAGAGTTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGA

Protein sequence

MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKNPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVAEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPHEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ

Homology

[Close]

BLAST of Clc09G03550 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 900.6 bits (2326), Expect = 5.8e-258
Identity = 452/470 (96.17%), Postives = 460/470 (97.87%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKN 60
           MATSSLPTKSLPPF PTS F PSSPSTHFTKPLFLAPPDISL TSSSSSSKL IPSSKKN
Sbjct: 1   MATSSLPTKSLPPFSPTSSFSPSSPSTHFTKPLFLAPPDISLSTSSSSSSKLLIPSSKKN 60

Query: 61  PWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120
            WLDPFDDG+DPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR
Sbjct: 61  QWLDPFDDGDDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180
           GDVRRCCCV+SGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY
Sbjct: 121 GDVRRCCCVMSGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180

Query: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240
           DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300
           GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA
Sbjct: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPH 360
           EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN ++GFKPVFVIPH
Sbjct: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAVRGFKPVFVIPH 360

Query: 361 EKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCS 420
           EKERENVEEEV D+ASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERENVEEEVGDDASIVFITTPGQLAALINDSAGVIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           EEKAKLFVPDAEAKRCITVSSATGRL DI++ TVKKAIQSFEVPLALAFQ
Sbjct: 421 EEKAKLFVPDAEAKRCITVSSATGRLTDIDLGTVKKAIQSFEVPLALAFQ 470

[Close]

BLAST of Clc09G03550 vs. NCBI nr
Match: XP_022953552.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 885.2 bits (2286), Expect = 2.5e-253
Identity = 441/471 (93.63%), Postives = 455/471 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPS-SKK 60
           MATSSLPTKSLPPF P S FPPSSPSTHFTKP FLAPPDISL TSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
           NPWLDPFDDG+DP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN I+GFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFC 420
           HEKERENVEEEV DNASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           SEEKAKLFVPD+EAKRCI VSSATGRLIDI+M TVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Clc09G03550 vs. NCBI nr
Match: KAG6575629.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014183.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 884.8 bits (2285), Expect = 3.3e-253
Identity = 441/471 (93.63%), Postives = 454/471 (96.39%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPS-SKK 60
           MATSSLPTKSLPPF P S FPPSSPSTHFTKP FLAPPDISL TSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
           NPWLDPFDDG+DP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN I+GFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFC 420
           HEKERENVEEEV DNASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           SEEKAKLFVPDAEAKRCI VSS TGRLIDI+M TVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Clc09G03550 vs. NCBI nr
Match: XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 882.1 bits (2278), Expect = 2.1e-252
Identity = 440/471 (93.42%), Postives = 453/471 (96.18%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPS-SKK 60
           MATSSLPTKSLPPF P S FPPSSPSTHFTKP FLAPPDISL TSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
           NPWLDPFDDG+DP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN I+GFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFC 420
           HEKERENVEEEV DNASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           SEEKAKLFVPDAEAKRCI VSSATGRLIDI+M TVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Clc09G03550 vs. NCBI nr
Match: KAA0058709.1 (photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK10515.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa])

HSP 1 Score: 878.2 bits (2268), Expect = 3.1e-251
Identity = 439/470 (93.40%), Postives = 455/470 (96.81%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKN 60
           MATSSLPTKSLPPF PTS FPPSSPSTHFTKPLFL+P  ISL    S+SSKL+IP SKKN
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISL----STSSKLRIPCSKKN 60

Query: 61  PWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120
           PW DPFDDGEDPEMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR
Sbjct: 61  PWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180
           GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY
Sbjct: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180

Query: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240
           DPDDYFPEPAEYTDMVG+LKGRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300
           GAGLFLSETFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKEV+A
Sbjct: 241 GAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPH 360
           EKYKKAG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN I+GFKPVFVIPH
Sbjct: 301 EKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPH 360

Query: 361 EKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCS 420
           EKERENVEEEV +NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           EEKAKLFVPDAEAKRCITVSS TGRLIDI+M T+KKAIQSFEVPLALAFQ
Sbjct: 421 EEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Clc09G03550 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 661.4 bits (1705), Expect = 7.7e-189
Identity = 342/467 (73.23%), Postives = 388/467 (83.08%), Query Frame = 0


Query: 4   SSLP--TKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKNP 63
           SSLP   K + PFF T   PP S S    KPL        L TS SS   + +   K NP
Sbjct: 3   SSLPLLPKPISPFFKT---PPFSTS----KPLVFLNFQTRL-TSRSSDVSVNL-KKKNNP 62

Query: 64  WLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLRG 123
           WLDPFD GEDP+ EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RG
Sbjct: 63  WLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRG 122

Query: 124 DVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYD 183
           DVRRCCCVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYD
Sbjct: 123 DVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYD 182

Query: 184 PDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAG 243
           PDD++PEPAEYTDM+GLLKGRYYDMVLSTKLAGLGHA FLFMTTARDRVSYIYP+VN+AG
Sbjct: 183 PDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAG 242

Query: 244 AGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVAE 303
           AGL LSETF  +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KEVVA 
Sbjct: 243 AGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAA 302

Query: 304 KYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPHE 363
           KY+ AGA  GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   ++GFKPVFVIPHE
Sbjct: 303 KYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHE 362

Query: 364 KERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCSE 423
           KERENVE+ V D+ SIVFITTPGQLAALINDSAGVIATNTAA+QLA AR+KP I LF SE
Sbjct: 363 KERENVEDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSE 422

Query: 424 EKAKLFVPDAEAK-RCITVSSATGRLIDIEMDTVKKAIQSFEVPLAL 468
           EK KLFVP AE K  C+ ++S TG+L DI++ TVK A+Q FE  LAL
Sbjct: 423 EKGKLFVPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Clc09G03550 vs. ExPASy TrEMBL
Match: A0A6J1GNJ2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456057 PE=4 SV=1)

HSP 1 Score: 885.2 bits (2286), Expect = 1.2e-253
Identity = 441/471 (93.63%), Postives = 455/471 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPS-SKK 60
           MATSSLPTKSLPPF P S FPPSSPSTHFTKP FLAPPDISL TSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
           NPWLDPFDDG+DP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN I+GFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFC 420
           HEKERENVEEEV DNASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           SEEKAKLFVPD+EAKRCI VSSATGRLIDI+M TVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Clc09G03550 vs. ExPASy TrEMBL
Match: A0A6J1JXN2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488799 PE=4 SV=1)

HSP 1 Score: 882.1 bits (2278), Expect = 1.0e-252
Identity = 440/471 (93.42%), Postives = 453/471 (96.18%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPS-SKK 60
           MATSSLPTKSLPPF P S FPPSSPSTHFTKP FLAPPDISL TSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
           NPWLDPFDDG+DP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN I+GFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFC 420
           HEKERENVEEEV DNASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           SEEKAKLFVPDAEAKRCI VSSATGRLIDI+M TVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Clc09G03550 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.5e-251
Identity = 439/470 (93.40%), Postives = 455/470 (96.81%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKN 60
           MATSSLPTKSLPPF PTS FPPSSPSTHFTKPLFL+P  ISL    S+SSKL+IP SKKN
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISL----STSSKLRIPCSKKN 60

Query: 61  PWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120
           PW DPFDDGEDPEMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR
Sbjct: 61  PWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180
           GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY
Sbjct: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180

Query: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240
           DPDDYFPEPAEYTDMVG+LKGRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300
           GAGLFLSETFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKEV+A
Sbjct: 241 GAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPH 360
           EKYKKAG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN I+GFKPVFVIPH
Sbjct: 301 EKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPH 360

Query: 361 EKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCS 420
           EKERENVEEEV +NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           EEKAKLFVPDAEAKRCITVSS TGRLIDI+M T+KKAIQSFEVPLALAFQ
Sbjct: 421 EEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Clc09G03550 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 875.2 bits (2260), Expect = 1.3e-250
Identity = 438/470 (93.19%), Postives = 454/470 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKN 60
           MATSSLPTKSLPPF PTS FPPSSPSTHFTKPLFL+P  ISL    S+SSKL+IP SKKN
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISL----STSSKLRIPCSKKN 60

Query: 61  PWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120
           PW DPFDDGEDPEMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR
Sbjct: 61  PWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180
           GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY
Sbjct: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180

Query: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240
           DPDDYFPEPAEYTDMVG+LKGRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300
           GAGLFLSETFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKEV+A
Sbjct: 241 GAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPH 360
           EKYKKAG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN I+GFKPVFVIP 
Sbjct: 301 EKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPR 360

Query: 361 EKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCS 420
           EKERENVEEEV +NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           EEKAKLFVPDAEAKRCITVSS TGRLIDI+M T+KKAIQSFEVPLALAFQ
Sbjct: 421 EEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Clc09G03550 vs. ExPASy TrEMBL
Match: A0A0A0K6S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1)

HSP 1 Score: 872.1 bits (2252), Expect = 1.1e-249
Identity = 434/470 (92.34%), Postives = 453/470 (96.38%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKN 60
           MATSSLPTKSLPPF PTS FPPSSPSTHFTKP FL+PP ISL    S+SSK QIP SKKN
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPFFLSPPLISL----STSSKFQIPCSKKN 60

Query: 61  PWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120
           PW DPFDDGEDPEMEYGSL++DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKLR
Sbjct: 61  PWFDPFDDGEDPEMEYGSLYSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180
           GDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVV SARGKQT+ELNKNVRWSNVY
Sbjct: 121 GDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVTSARGKQTFELNKNVRWSNVY 180

Query: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240
           DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300
           GAGLFLSETFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKEV+A
Sbjct: 241 GAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPH 360
           EKY+KAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIA  I+GFKPVFVIPH
Sbjct: 301 EKYRKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPH 360

Query: 361 EKERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCS 420
           EKERE+VEEEV +NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERESVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVPDAEAKRCITVSSATGRLIDIEMDTVKKAIQSFEVPLALAFQ 471
           EEKAKLFVP+AEAKRCITVSSATGRLIDI+M T+KKAIQSFEVPLALAFQ
Sbjct: 421 EEKAKLFVPNAEAKRCITVSSATGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Clc09G03550 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 661.4 bits (1705), Expect = 5.5e-190
Identity = 342/467 (73.23%), Postives = 388/467 (83.08%), Query Frame = 0


Query: 4   SSLP--TKSLPPFFPTSGFPPSSPSTHFTKPLFLAPPDISLCTSSSSSSKLQIPSSKKNP 63
           SSLP   K + PFF T   PP S S    KPL        L TS SS   + +   K NP
Sbjct: 3   SSLPLLPKPISPFFKT---PPFSTS----KPLVFLNFQTRL-TSRSSDVSVNL-KKKNNP 62

Query: 64  WLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLRG 123
           WLDPFD GEDP+ EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RG
Sbjct: 63  WLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRG 122

Query: 124 DVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYD 183
           DVRRCCCVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYD
Sbjct: 123 DVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYD 182

Query: 184 PDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAG 243
           PDD++PEPAEYTDM+GLLKGRYYDMVLSTKLAGLGHA FLFMTTARDRVSYIYP+VN+AG
Sbjct: 183 PDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAG 242

Query: 244 AGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVAE 303
           AGL LSETF  +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KEVVA 
Sbjct: 243 AGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAA 302

Query: 304 KYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANTIKGFKPVFVIPHE 363
           KY+ AGA  GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   ++GFKPVFVIPHE
Sbjct: 303 KYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHE 362

Query: 364 KERENVEEEVRDNASIVFITTPGQLAALINDSAGVIATNTAALQLAIAREKPSIALFCSE 423
           KERENVE+ V D+ SIVFITTPGQLAALINDSAGVIATNTAA+QLA AR+KP I LF SE
Sbjct: 363 KERENVEDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSE 422

Query: 424 EKAKLFVPDAEAK-RCITVSSATGRLIDIEMDTVKKAIQSFEVPLAL 468
           EK KLFVP AE K  C+ ++S TG+L DI++ TVK A+Q FE  LAL
Sbjct: 423 EKGKLFVPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

The following BLAST results are available for this feature:

BLAST of Clc09G03550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896546.1	5.8e-258	96.17	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]
XP_022953552.1	2.5e-253	93.63	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]	[more]
KAG6575629.1	3.3e-253	93.63	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ...	[more]
XP_022992479.1	2.1e-252	93.42	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima]	[more]
KAA0058709.1	3.1e-251	93.40	photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK1051...	[more]

BLAST of Clc09G03550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	7.7e-189	73.23	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Clc09G03550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNJ2	1.2e-253	93.63	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1JXN2	1.0e-252	93.42	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima ...	[more]
A0A5A7UYW0	1.5e-251	93.40	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	1.3e-250	93.19	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A0A0K6S9	1.1e-249	92.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1	[more]

BLAST of Clc09G03550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	5.5e-190	73.23	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 137..271 e-value: 5.3E-9 score: 38.4
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 298..463 e-value: 3.6E-13 score: 51.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57
None	No IPR available	SUPERFAMILY	53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 137..460
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 1..468

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03550.1	Clc09G03550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016757	glycosyltransferase activity