Clc09G03490 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03490
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	40S ribosomal protein S12
Location	ClcChr09: 2666490 .. 2667957 (+)
RNA-Seq Expression	Clc09G03490
Synteny	Clc09G03490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCGTGAGTGGAAACTTGTTTATGCCAATTGCTAATTTCCCCCCGTTGATTGCCATTTTTTTGTGTTGTATCTGGTTGCGTTCTTTTCAATATCTTAGAAATTGACGATGCCTTGGTCTTCTTAGAAGTAGAGTCTGCTGCTTTCAATCAACTATTCGAGAGTATTTCCTATTATTCAGTATGAATAAGAAAAGAGATGGAAACTTGATTGGTTAAGGCGATAAAGCAATCATTCTTGATGCCTGGAGATGCAAATTATATGTTTTGGTCATTGGTAATATAAAATGTAGAGTTTTCAAGTACAATATGTGGTTTATACGTTGATCTGTAATAGTTCTTTGTATGGGATTAAGAGTTGCTGGGGTGTCGAGATTCCTATATTACACGTTCAATGGTGAACTACTATTGAAATTTGAGGCTTTTTTTTGGTGATTTCATGATATTTTGCGTCCATGACTATGCAATCGGCTTCCCTTGTTGGCAGAAGCATGCCATAGAAGGGTACTATTGTATTCCCTTTTAACTTGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTCCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGCCTTCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAATGTTAACTTGATGACAGTCCCAAGCGCAAAAACCCTCGGCGAGTGGGCCGGTGTAAGTGTTTAATTTTATTTGGACACATTTTTTTACATTCAATCTGCAGATAAAATGGTTTACCTTTTGCTCTTTTTTGTTGAGATCTAGCACCATTATGCACCATATTATACGCTTTGTAACAAGATTGAACCAATACCTGTCAATATTTAGCTACATGTTCTACATGTTCTGGATTATTTGAGGATATAAATAAAATGCATATGTGCAAAATCCAGAGAATTTGTATGATCCTCACTTAAAGGGAAATGCTAACACTTCCATGAAAAGTTTGTTTTTGCCTTTAAGGTTTACTATTTGCATTCTACTCCATCAGTTTGAGTTTGATATAAAGGTGCAATTAATACACATCTAGCTATATTACTAGCAAAAGCTTATGTGAGTTCAGGCTAAGTCATTTTTTCATATTTGGTCTAATGCAGCTATGCAAGATTGATTCAGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGTACATATATGTGTCCATTCATTTCCATAGTTTCTTCTCTTTTTAAACAATCTGTTTACTTAAATTTTGATTTTGTCATCCCCCAGGACTTTGGTGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGA

mRNA sequence

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTCCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGCCTTCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAATGTTAACTTGATGACAGTCCCAAGCGCAAAAACCCTCGGCGAGTGGGCCGGTCTATGCAAGATTGATTCAGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGTGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTCCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGCCTTCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAATGTTAACTTGATGACAGTCCCAAGCGCAAAAACCCTCGGCGAGTGGGCCGGTCTATGCAAGATTGATTCAGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGTGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

[Close]

BLAST of Clc09G03490 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.2 bits (718), Expect = 4.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.2e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.7e-56
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 6   VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

[Close]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.4e-50
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Clc09G03490 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Clc09G03490 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Clc09G03490 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Clc09G03490 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Clc09G03490 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Clc09G03490 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Clc09G03490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954225.1	4.9e-72	100.00	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_038896811.1	1.4e-71	99.29	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022991483.1	1.4e-71	99.29	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_023548009.1	1.4e-71	99.29	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ...	[more]
XP_004147008.1	3.2e-71	99.29	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]

BLAST of Clc09G03490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	6.7e-56	77.61	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.7e-51	69.44	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	9.4e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	5.4e-37	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	5.4e-37	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Clc09G03490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQC3	2.4e-72	100.00	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A6J1JWC7	7.0e-72	99.29	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]
A0A5D3BJY5	1.6e-71	99.29	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	1.6e-71	99.29	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A0A0KA08	1.6e-71	98.57	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]

BLAST of Clc09G03490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.2e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.2e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.2e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	6.7e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	6.7e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 8.1E-28 score: 96.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 4..140 e-value: 1.4E-54 score: 185.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03490.2	Clc09G03490.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome