Clc09G03420 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACCCATGGCCCCATCTATATAAACCTTCTTCTTTCCCCATTCCCCACTTTTTCCTTCTTCCGCCACCAAACCCATTTCTCTCTCTACTTTCTCTCTCATCGCCATGTCCGACCAAGAATGGGTCGATGTTGCCCTCTCTGATGACTCTCTCGTTGTCGACTTACTTCTTCGTCTCAACCGTCCTCCATCTCCGCCGCTCCCTCTTGACTGGTCGGTTCGTCAGCCTCGCTCTAAGCCCATTCTTCCTCGCCATGCCTCCGATTCCGCTGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGTGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTCGTCGACGCATCCGACGCTGCAAGATCTAAGGTTCCCCCCTTCGTTTCGGTTTCGGTTTCGGTTTCGGTTTTTCTTTTTTCGGTTGTGTTTCGTTTTGATGTTCTTCTGAAAACTCAGTGAGTGCGTGGGAATAGACGAAAATACCCCTCCGTCGCCGACTTGTCAGAGTTTTGAACCATTTTACTTCAAAACTTCTAATTATTCCCCTTTTTGAATTTACGGATCTACCCTTCTTTTCCTCACCGCCGGCGACTTTCCCGGCCATTTTTTTCCATAATTACCCAAATACCCATTTCGTCCAATGATGAAATGGGACGACCCATTTTCCCTTTTCTCCAAATGGGTGACCTCTGCTGGACGCAAATGGGTCAAAAAGAGTGGGAAGTAATGGGATTCTAAAAAGGGCATTTTGGTAATTTGGATAATACAAGCCACAAGCCAGTGTAAAGAGTCAAACCCCCTTCCTCTCTCCATTGGCATTGGCCCAAATACACTCCACCTGGAAAATGGATTGTGGATATATCCCCCAAAGTAATAGTCAAACCCTAGACTCTACCACAAGGGTCATTTTCGTCATTTCACCACCAAAAGCTTAAAGGGCCCCCCTTTATCGGTGGCGTGTTTCCGTGGCAATGAAGTCTGTGTGCAAATGGTGTTGGTGGTTGTGCCCTTTTTATGTTGGTTTATGAAAAATTATACCCTAAATTTTAAAAACAATCCAGTGTGGTCGTTTCTACCTTAACTTTATAGTTTTGCTTCATCCCTACCCTTCATTTCCCTTTAATCTGACAAAAGTCTCTGTTTTTTAAATGGTTTAGATATATTAGATTCGTTGGTATGGTTAAAAGATGTTTTTAAATGGGGGTGTTCTTCAGTTCTCTTCCATGACAGCCTGTGATCCTAAACTTTTCCCCCTTTTTCTTATAAAACATAAATTTTTGTGTCTGGAAAATGGTACAACAATGTTTTTTTTGAACCCCATTTTGGTGAACAACAAACTAACCCTTGTTTTAATCTTTTAACTTAGTGGTTGATTATGGCTAATACTTTCTTTCTCCTTTAACACCCCCATTAAATTAACTTGGTTTTAACAACCTATAGCTTCTTCATTGTGTGTTTGGTGGGGGGGGGGGGGGGGGGGGGAAGGGCCCCACTTGTGGAAAAAGAAAGAAAGAAGAATCCAACTTGTGAAATGGGGCATCTCTAATTCAATGCTTTTTCTTGATTTGGTTGTATAGTGGTATTAGTGGATATGATTATTAGAAGTAGTTAGTAATTAGGATACAATTGTTGGTTTTATAACTATAAGTTTTAAGTTGACCGAGTGCTGACTTTTGAATGGTATGTTTGTAGATTGCTGGTAAGAATGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGGTATGATTTTTATCAGCCAAGAAATTCCCAATTCCCCACTTTATTCTTTCTTTCTTTGTTTCCTCTTGCTTTTGTTTTTCACCCTTATCTTTTTCCTCTTCCCTTTTTGGTTAATGTGTTAGATTCTGAGTTTATTTCCTTTTTGGGTGTATCCATTGGCCATATACTCATATTAGCTTTAGTGTGTGTGTTTTGGATAATGTCTGATTGTTGTGTTCGTGGTGAATGGCAGACACTTGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGGAGAAGCTTAAAAGATGTATGTTTTTTTTGTAAGAATATGAAGATTGTCGTTAACTATTGTTGGATTCGGTCGCCTTCTTGCTTAAGTTTTTTCCTTTTATAAGGGCAGGCCTTGGCTACCATGAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATTTTCATTTTCATATTCTTCTTGTATCTTTCTCTTTATTGGGGAAGTTGCATTTACTTCTTATACCTACTAGAAATTATTATGACCGAAAAGCTTCTGCTTTTGCTTTGTTGCTTTTGTTTGCCCCTTTTGTTATGTCCTTTTTGCTGATGTTTGCATCTGTAAATTGAGATTTATGGTTTGTGATAGAGCTCAAGTTGAGAATCAATCCAATGGCTTGTTTAAATGAGTGTTTTCTCAGCAGATTCTTTGTTTTCAAATAGTTCTCAAGTAGTCTAGTTTTTTGGTCTTTTGTCTTCTTAAACTAAAAGTAAGTACTTTAACTCGGTAGTCTACGAGGACCAACTTTAGTTCTGGAAAAGATGCTATTCTTAACAACAAAGCAAAAGAAAATGAGATTAATACAAATGGCTAACCAAACAAAAGCTATTTTTCAAGGAGCAATACTTGGTGGCATCCTGTGTTACTCATTTTTTGCAGCCTACTCTAACCATAGTAAGAAAAAAAATAAAAAAAATATTCAAGTAAGAAAAAAGTAGTTCGTCAGGTGGCAAACTACGGTTGGACAATTGGGTGGGTGGTAGAAGATGAGTGCAATCTTTACCCAATTTTTTTCTTTTTGAAAACTTCTTAACAGTTACTTTGATGCTGCCACAACAAAAGTAATGTCACATGTGAGGCAGGTGTGTTGAACACTTGGAGATGTTGATCTTAACAATTAGATTTCCATTTTTAACTGATAAATAGAGAATATTGCATGACAGTAATTTCCTGAAGAAGCTTATAAGCGATCTTTATGTGCTACAGAAGCTAAATTGTTCTTTTTGAAATTCTACAGCTTGAACTTGAATCACAGCAAGCGATCGAAACGGTTGTAACATCTGCTGTTCCGGTGGAAGCAAATTCCGACCAACCTCAACTACAGATGCCACCGAGATCTATATGCAACACTACGCCCATCGGAGTCGCTGCTTTTGGTTGCAATGATGTCGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCCGGCACCGAGGCCCTATACCGAATGAGCTAGGCAGAGTCAACAGAAACGAGCAAATATTAAGCTTCTTTAACCGAGGGACAAAGATCGATGACGACGACGACATTTGCTTCTTAATAAGATGTTGTTCCTAAATCCTAACCCTGTCATAGGCTTGAGTTACTTGTAACTGTAATTACAAAACCAATTTTCTCAGCTACATATTCATGTAACTTCCTTTTTTTCCCTTTATATAGTACCCAAAAAAAATCAAGGACAGGACCGTGTCGAGACCCCGAAAAACCCTTTAGCACTTTAATTATATTATTCATTCACAGGTTTCTGCATCTGCTTATATTCTTTGGAGCCAACCCTCTCCCTCATCTCAGACTCAAAAGAGATTGATTACAAACACTGTAATTATTATTTGATAAATGCAAGCAAAGTTGTATGTTCACCACATCTAATTATTAATGATGGAATTGCTATGTCA AAACCCATGGCCCCATCTATATAAACCTTCTTCTTTCCCCATTCCCCACTTTTTCCTTCTTCCGCCACCAAACCCATTTCTCTCTCTACTTTCTCTCTCATCGCCATGTCCGACCAAGAATGGGTCGATGTTGCCCTCTCTGATGACTCTCTCGTTGTCGACTTACTTCTTCGTCTCAACCGTCCTCCATCTCCGCCGCTCCCTCTTGACTGGTCGGTTCGTCAGCCTCGCTCTAAGCCCATTCTTCCTCGCCATGCCTCCGATTCCGCTGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGTGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTCGTCGACGCATCCGACGCTGCAAGATCTAAGATTGCTGGTAAGAATGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTTGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGGAGAAGCTTAAAAGATGCCTTGGCTACCATGAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATTTTCATTTTCATATTCTTCTTGTATCTTTCTCTTTATTGGGGAAGTTGCATTTACTTCTTATACCTACTAGAAATTATTATGACCGAAAAGCTTCTGCTTTTGCTTTGTTGCTTTTGTTTGCCCCTTTTGTTATGTCCTTTTTGCTGATGTTTGCATCTCTTGAACTTGAATCACAGCAAGCGATCGAAACGGTTGTAACATCTGCTGTTCCGGTGGAAGCAAATTCCGACCAACCTCAACTACAGATGCCACCGAGATCTATATGCAACACTACGCCCATCGGAGTCGCTGCTTTTGGTTGCAATGATGTCGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCCGGCACCGAGGCCCTATACCGAATGAGCTAGGCAGAGTCAACAGAAACGAGCAAATATTAAGCTTCTTTAACCGAGGGACAAAGATCGATGACGACGACGACATTTGCTTCTTAATAAGATGTTGTTCCTAAATCCTAACCCTGTCATAGGCTTGAGTTACTTGTAACTGTAATTACAAAACCAATTTTCTCAGCTACATATTCATGTAACTTCCTTTTTTTCCCTTTATATAGTACCCAAAAAAAATCAAGGACAGGACCGTGTCGAGACCCCGAAAAACCCTTTAGCACTTTAATTATATTATTCATTCACAGGTTTCTGCATCTGCTTATATTCTTTGGAGCCAACCCTCTCCCTCATCTCAGACTCAAAAGAGATTGATTACAAACACTGTAATTATTATTTGATAAATGCAAGCAAAGTTGTATGTTCACCACATCTAATTATTAATGATGGAATTGCTATGTCA ATGTCCGACCAAGAATGGGTCGATGTTGCCCTCTCTGATGACTCTCTCGTTGTCGACTTACTTCTTCGTCTCAACCGTCCTCCATCTCCGCCGCTCCCTCTTGACTGGTCGGTTCGTCAGCCTCGCTCTAAGCCCATTCTTCCTCGCCATGCCTCCGATTCCGCTGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGTGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTCGTCGACGCATCCGACGCTGCAAGATCTAAGATTGCTGGTAAGAATGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTTGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGGAGAAGCTTAAAAGATGCCTTGGCTACCATGAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATTTTCATTTTCATATTCTTCTTGTATCTTTCTCTTTATTGGGGAAGTTGCATTTACTTCTTATACCTACTAGAAATTATTATGACCGAAAAGCTTCTGCTTTTGCTTTGTTGCTTTTGTTTGCCCCTTTTGTTATGTCCTTTTTGCTGATGTTTGCATCTCTTGAACTTGAATCACAGCAAGCGATCGAAACGGTTGTAACATCTGCTGTTCCGGTGGAAGCAAATTCCGACCAACCTCAACTACAGATGCCACCGAGATCTATATGCAACACTACGCCCATCGGAGTCGCTGCTTTTGGTTGCAATGATGTCGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCCGGCACCGAGGCCCTATACCGAATGAGCTAG MSDQEWVDVALSDDSLVVDLLLRLNRPPSPPLPLDWSVRQPRSKPILPRHASDSAARASPTTPLTWSSGGGGATSVSGGFVDASDAARSKIAGKNEVVATMKRPRKKKTLGELKEEEVLLLKERRSLKDALATMRLSVEKQRAMNGSLKKMKVNFHFHILLVSFSLLGKLHLLLIPTRNYYDRKASAFALLLLFAPFVMSFLLMFASLELESQQAIETVVTSAVPVEANSDQPQLQMPPRSICNTTPIGVAAFGCNDVDASYQLTLPNVSCKLQEMGTLGTVRLLPDLNLPFQEDSGTEALYRMS Homology
BLAST of Clc09G03420 vs. NCBI nr
Match: XP_038896159.1 (uncharacterized protein LOC120084450 isoform X1 [Benincasa hispida]) HSP 1 Score: 401.4 bits (1030), Expect = 7.1e-108 Identity = 230/312 (73.72%), Postives = 238/312 (76.28%), Query Frame = 0
BLAST of Clc09G03420 vs. NCBI nr
Match: XP_008461167.1 (PREDICTED: uncharacterized protein LOC103499830 [Cucumis melo]) HSP 1 Score: 374.8 bits (961), Expect = 7.2e-100 Identity = 220/306 (71.90%), Postives = 228/306 (74.51%), Query Frame = 0
BLAST of Clc09G03420 vs. NCBI nr
Match: KAA0058721.1 (uncharacterized protein E6C27_scaffold339G001910 [Cucumis melo var. makuwa] >TYK10529.1 uncharacterized protein E5676_scaffold459G001800 [Cucumis melo var. makuwa]) HSP 1 Score: 369.4 bits (947), Expect = 3.0e-98 Identity = 217/303 (71.62%), Postives = 225/303 (74.26%), Query Frame = 0
BLAST of Clc09G03420 vs. NCBI nr
Match: XP_004135872.3 (uncharacterized protein LOC101212535 [Cucumis sativus] >KGN45229.1 hypothetical protein Csa_016153 [Cucumis sativus]) HSP 1 Score: 361.7 bits (927), Expect = 6.3e-96 Identity = 215/306 (70.26%), Postives = 224/306 (73.20%), Query Frame = 0
BLAST of Clc09G03420 vs. NCBI nr
Match: XP_038896160.1 (uncharacterized protein LOC120084450 isoform X2 [Benincasa hispida]) HSP 1 Score: 361.7 bits (927), Expect = 6.3e-96 Identity = 214/312 (68.59%), Postives = 220/312 (70.51%), Query Frame = 0
BLAST of Clc09G03420 vs. ExPASy TrEMBL
Match: A0A1S3CDM0 (uncharacterized protein LOC103499830 OS=Cucumis melo OX=3656 GN=LOC103499830 PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 3.5e-100 Identity = 220/306 (71.90%), Postives = 228/306 (74.51%), Query Frame = 0
BLAST of Clc09G03420 vs. ExPASy TrEMBL
Match: A0A5D3CK05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001800 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 1.5e-98 Identity = 217/303 (71.62%), Postives = 225/303 (74.26%), Query Frame = 0
BLAST of Clc09G03420 vs. ExPASy TrEMBL
Match: A0A0A0K8M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432100 PE=4 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 3.0e-96 Identity = 215/306 (70.26%), Postives = 224/306 (73.20%), Query Frame = 0
BLAST of Clc09G03420 vs. ExPASy TrEMBL
Match: A0A6J1JT79 (uncharacterized protein LOC111488119 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111488119 PE=4 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 5.2e-96 Identity = 215/319 (67.40%), Postives = 226/319 (70.85%), Query Frame = 0
BLAST of Clc09G03420 vs. ExPASy TrEMBL
Match: A0A6J1GQQ9 (uncharacterized protein LOC111456207 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456207 PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 7.5e-95 Identity = 216/322 (67.08%), Postives = 225/322 (69.88%), Query Frame = 0
BLAST of Clc09G03420 vs. TAIR 10
Match: AT1G80610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 1.6e-25 Identity = 86/180 (47.78%), Postives = 105/180 (58.33%), Query Frame = 0
BLAST of Clc09G03420 vs. TAIR 10
Match: AT1G15800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 2.8e-25 Identity = 80/174 (45.98%), Postives = 103/174 (59.20%), Query Frame = 0
BLAST of Clc09G03420 vs. TAIR 10
Match: AT4G32030.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 80.9 bits (198), Expect = 2.0e-15 Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 0
BLAST of Clc09G03420 vs. TAIR 10
Match: AT4G32030.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 5.1e-11 Identity = 59/154 (38.31%), Postives = 80/154 (51.95%), Query Frame = 0
BLAST of Clc09G03420 vs. TAIR 10
Match: AT5G25210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-08 Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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