Clc09G03340 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATATTCGATATGTCCCTAAGTCTCTTATGATCATCGATCCTGATTCCTATACTCCACAGGAAATTGCAATTGGTCCATGCCATCACTGGCCCCAAGAGTTGTACGAGATGGAGAGGTGCAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGTCTCAAGTTTCACGATCTCGTTTACAAATTCACCAAGTACGAGCCAAGGACCCGGGCCAGCTACCACAAATACCTCAATTTCAACGGTGAAACATTTTCGAAGAAAAGAGTATAAACTACATTTTTCTCTATTATTATTTATTTTTTCTTTTAATTTGCTATGTTTATTATTTTTTCTCTTTTAATTTGCTATTTCTACTTTCTCATTATAGTTAAACAACACTGTAGACTATTTTCTATTTTAAAATTGAAATTTATCGAACAATTTGTCTCATTTTAAAGATCATCATTCTAAAAACACAATTGACTGGACTTTTTTACACTATCATAAAGTAGCATAAAATGGAGTATTCTAGGTGGTTTCGTATCTAAACCAATTTCCAAGGGCAAATTTACCAAAGACCGTCTCAACTTTAATGCGTTTTTATACTAGTATAAATCAAAGCCATTCTATTTACCAAAATGACCATTTGACACAGTGGTAGATGTTCTCATCTCCCTTGATTAATTTAGGTTCAAATTCTTCTTCACTTAATTCAATTTTATATCTATTAAATTAATTAATTTCAAAAAGAAAATGGTATATGTCAAGAACGTAATAGACATGAAATTAAAAGTTTAGAGGTCTAGAGTTTAACTTTAATTTCTCACCCTCACAGTTGTTGGATTGGGAAAATAAATAAATAAATTTAGAGGTCTATGTGACATTTTTAAAGTTTAGTGATGATATAAGACACAAAATTAAAAGTTTATAGACTAAATTTGTAATTTTCTTTTTTACATATTTGAATATTTTTCCAATACATCTTTTTTTTAGAATATTTTTATGAAGCATTAAACTAAGCCCTAAAACAAAATTTTTATTTGACATTGTCAATCTTTCATGTCAAATAGGAGTTCAAATAACCCAAATTACTCCACTCAAATCGTCTCAATTGGGTTAGTTTTTATTTTTTGGTTTGGTATCAATTGATCTTTTTAAACTAGAAATTTGGGTTGGTTCTCGTTTTTAAACTTTTGGTCTGGTGGACCTGACCCACCTTTAAAGAATGGTGGATGTTGCAATATATCATTAAATAAAAAACTCATATTTTAAATGTAATTTATACATGAATTATATCATCAAATAACCTATTTTGATGTTGGCTTCTTTCAATAGTTTATCATTTTTTTTGTAAAAGAAATATTTTAAAGTTTTAGTCAAACATTAAAATGGAAAACAATTATTCTAATCTTAAAAATAGATTCAACATGAAGTAAATAACTAAAAATTCAATTGTCATATTTTTATGTTTTCCTTCCAATGTGTCTTTTACCTTGGGCGTTCCAAATTCAAAACCAAGGGCAGTAGAGCAACACTCTATGGGCAAGTACACAAAAAGACCAAAAAGCCATTCCAGCATTACCCACACAATACGCAAGAAGACAAGGACACATTAGGAAAAAAATTAAATGAAGGTTAAATTATAGAAAATACCCTACACCTTAAACTTTGCTCTTTATTTATACTCCTATACTTTCAAAAGTTTTAATATTATCCTCGAGTAGAAATTCTTAAAAAAAATAAATTCTTGAAAATTGGCACCTAAATGGTGTTGTAGTGACCTATATTTTAGTATTAGTGGGACATTATTCCAAGTCCCCATTAAAGTCTAAATTTCTAAAGGATTTCTAATACGAAGGTAGTTTTAAAACATTTATAAAAAGTTAAGGGGTAGTATTGCAACTGAGGGTTTTTTTTTTTTTTTTTTTGTTAAAGTACCATTTTGGTTCCTATATTTGAATTTTGTTCAATTTACTTTTCAAATGTACTTTCTATAAATCCTAAATTTAGTTATTCAAGTTAATTTTCATCGAAATTGATTAAATAATCATAATAGAATTCATGCAAAAAAAAAAATGCGATATATGAATATATTTTTAACATCTATAATAAAAATGTTTATTAAAAATAAAAAGTAATGACAAATTCACAATAATCTACTACTATGAATTGAATTCAAGATTGATTGAAAACACTAAAATTAAACATTTAAAAGTAAGATACAAATCAAACAAAATATAAAAATCAAAATGATATTTTTAAATTTTTTAATAATTTAGTCTTTAAAAAATCTTAAATTACATATTTACCCCTCCAAGGAAGCTTAAGTCCGACGGAAAAAGAGTTTCCATTAAATAAAAACGCCGAAAAAGCGATCACTCAATTCTCACATGCAGATGCAGTTGCAACTTCCCCGTCTCCAATGGCTACCAAAACCGCTTCCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAAGGCCTCCGACAAAACAATGCCGCCGCCTGGAAGCCAATCGAAGGCGGGGACCACGGATCATCTCGTTAAGGCTTTTCTGATGCAGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGAGGAATTTCCAGCCTAAACCTTCCCGATTCTGCAATGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA ATGCATATTCGATATGTCCCTAAGTCTCTTATGATCATCGATCCTGATTCCTATACTCCACAGGAAATTGCAATTGGTCCATGCCATCACTGGCCCCAAGAGTTGTACGAGATGGAGAGGTGCAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGTCTCAAGTTTCACGATCTCGTTTACAAATTCACCAAAAATTTGGGTTGGTTCTCGTTTTTAAACTTTTGGTCTGGTGGACCTGACCCACCTTTAAAGAATGGAAGCTTAAGTCCGACGGAAAAAGAGTTTCCATTAAATAAAAACGCCGAAAAAGCGATCACTCAATTCTCACATGCAGATGCAGTTGCAACTTCCCCGTCTCCAATGGCTACCAAAACCGCTTCCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAAGGCCTCCGACAAAACAATGCCGCCGCCTGGAAGCCAATCGAAGGCGGGGACCACGGATCATCTCGTTAAGGCTTTTCTGATGCAGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGAGGAATTTCCAGCCTAAACCTTCCCGATTCTGCAATGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA ATGCATATTCGATATGTCCCTAAGTCTCTTATGATCATCGATCCTGATTCCTATACTCCACAGGAAATTGCAATTGGTCCATGCCATCACTGGCCCCAAGAGTTGTACGAGATGGAGAGGTGCAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGTCTCAAGTTTCACGATCTCGTTTACAAATTCACCAAAAATTTGGGTTGGTTCTCGTTTTTAAACTTTTGGTCTGGTGGACCTGACCCACCTTTAAAGAATGGAAGCTTAAGTCCGACGGAAAAAGAGTTTCCATTAAATAAAAACGCCGAAAAAGCGATCACTCAATTCTCACATGCAGATGCAGTTGCAACTTCCCCGTCTCCAATGGCTACCAAAACCGCTTCCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAAGGCCTCCGACAAAACAATGCCGCCGCCTGGAAGCCAATCGAAGGCGGGGACCACGGATCATCTCGTTAAGGCTTTTCTGATGCAGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGAGGAATTTCCAGCCTAAACCTTCCCGATTCTGCAATGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA MHIRYVPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYKFTKNLGWFSFLNFWSGGPDPPLKNGSLSPTEKEFPLNKNAEKAITQFSHADAVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRLAVS Homology
BLAST of Clc09G03340 vs. NCBI nr
Match: KAA0058731.1 (uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa]) HSP 1 Score: 147.5 bits (371), Expect = 1.3e-31 Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 0
BLAST of Clc09G03340 vs. NCBI nr
Match: KAG7014157.1 (hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 147.1 bits (370), Expect = 1.7e-31 Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of Clc09G03340 vs. NCBI nr
Match: XP_008461151.1 (PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo]) HSP 1 Score: 145.6 bits (366), Expect = 5.1e-31 Identity = 82/104 (78.85%), Postives = 86/104 (82.69%), Query Frame = 0
BLAST of Clc09G03340 vs. NCBI nr
Match: KGN45240.1 (hypothetical protein Csa_016736 [Cucumis sativus]) HSP 1 Score: 142.9 bits (359), Expect = 3.3e-30 Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of Clc09G03340 vs. NCBI nr
Match: KAG6593379.1 (hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 141.7 bits (356), Expect = 7.3e-30 Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy Swiss-Prot
Match: P0C897 (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy TrEMBL
Match: A0A5A7UZ19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002010 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 6.5e-32 Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy TrEMBL
Match: A0A1S3CEH6 (uncharacterized protein LOC103499822 OS=Cucumis melo OX=3656 GN=LOC103499822 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31 Identity = 82/104 (78.85%), Postives = 86/104 (82.69%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy TrEMBL
Match: A0A0A0K698 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432210 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.6e-30 Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy TrEMBL
Match: A0A6J1DD51 (uncharacterized protein LOC111019381 OS=Momordica charantia OX=3673 GN=LOC111019381 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 6.3e-27 Identity = 68/90 (75.56%), Postives = 71/90 (78.89%), Query Frame = 0
BLAST of Clc09G03340 vs. ExPASy TrEMBL
Match: A0A1S3CDL4 (putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103499824 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22 Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0
BLAST of Clc09G03340 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related ) HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11 Identity = 47/149 (31.54%), Postives = 68/149 (45.64%), Query Frame = 0
BLAST of Clc09G03340 vs. TAIR 10
Match: AT3G02645.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Clc09G03340 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related ) HSP 1 Score: 58.2 bits (139), Expect = 9.9e-09 Identity = 37/115 (32.17%), Postives = 57/115 (49.57%), Query Frame = 0
BLAST of Clc09G03340 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related ) HSP 1 Score: 58.2 bits (139), Expect = 9.9e-09 Identity = 37/115 (32.17%), Postives = 57/115 (49.57%), Query Frame = 0
BLAST of Clc09G03340 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related ) HSP 1 Score: 52.8 bits (125), Expect = 4.2e-07 Identity = 42/139 (30.22%), Postives = 57/139 (41.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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