Clc09G02780 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G02780
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description39S ribosomal protein L41-A, mitochondrial-like
LocationClcChr09: 2242296 .. 2248679 (+)
RNA-Seq ExpressionClc09G02780
SyntenyClc09G02780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGAGTTTGAAGGTATAATTGCAACTACCACCCTATTTCATGAATAAATTTTGCAATTTGCCCATAAAATGATTAGCTGCATTATGGAAGCCTTTATGAAAAATAAAAATTTTAGTCAAATTGATACAACTTTTTCTAAGCCCCTACCCCAATTGGTTGTAATTAATCGATTAATTTAAAATAAATAAATAAATAAAGTTAAAAACCACTTTTGGTCCTAAACTTTCAAAGTAAAAATTTAGTCTAGAACTTTGGTTTATAATTTTAGTCGTATACTTTCATGAAAGTAACAATTTAGTCTATAAACTTTAGCATGTAACAATTTAATCCTTGTTCTTTCAAATTTGTAACAATTTAGCCTCCAATGTAAAAGAAATTCATCAAATTAGATACCAATATTTATTAATTTATGATATAAATTCTGTATTATATGGAAATATTAAATTTCTAAGTTTATTTTTATCGATGCATTTATGTAAAATTTTTTTATTAAATTTTAATAATAAAAACTAAATTGTTACCCATTTTAAAAGTACAAATATTAGATTGTTATCTGTTTAAAAGTATACCGATTAAATTGATAGAACCAAAATTTATGGAGTAAATTGTATTCCGAAAAAGTAACTCGGAGTGATTTTTAACTCGAAGAAAAAAAGCTTTCTTTTCTTTTTCTCTCTCCTCCTTTGTGCTCTTAACTCTCTCATTCCTCCTCCTCTCCTATTCCCACAGATACTCGCCGCTGCCGCCATAGGTTCAACAATTCTGTCACCTGTCCATCTCTTCCCTTCAGCGAGTTTAAATTCCACCGCCGTAAGATAATTCCGACGCGCTTAAACCCCGCGAAGACATTCGTATCCGGTTGATAGATAACCTAGCCGAGGAAATTTCAGTAAGGGTTCTGGTACTGTTCTTTTGTTTGATTGAGGTGATTAGCTTGGGAAATGGCGTTAGGACTAATATTGGGACTCGGAAGAGCAATGCGGAGGAAGCGCACGTCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAAAATTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTATTCATTCCTCTTCCACCGATCCTAATATAATTTTAGTTATTTATTTTTGCCGAGAAAATGTTCGATTATTTAATTTAATTGATTTCTCTATCGAAAGTTGATATTTAAAGAGTTATTGCCGCTAGATCCAACTGTAATTTAGTAAAATGTTTAAAATCATTATTGCTTCTTGGAATGTGATGCGATTAGTAGGCTATTGAATGACTTCTAATTCCGGATTTTGGTATTTGTATTTTGTATGGTTCTTGACATATTTTGTTATTGATATCATACTGCAAATTGCTGTTTGTAACTGTAAAAATTGGTTGTTAAAATGTGAAAAATTCTTGCAGGTGGATATGTAGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTCATTTCAAGGTATTTTTCCTGGTTGTTTATTCTAAAATTTAGAACTGATCTCTCCCTTTCCTACCCATTACATATCCAAGTATTTTGAATATAATTGCAGAGATTAAAATAGCCTACCAGGGAAAAGGTGTACAAAATCTGTTTTAGCTTTTTGGGTCTCGCTTTTAAAGTTTTATTAGGTTTATATGCTTTCCTGAATTCTGAATTCTGATTTGTGTTCTTTCCTTATTTCCTTTTAATGCATTGTTTCTTGTTGGGTATTCCGTGAGTGATTTCAGTGCAGTGAGCTTTTATGCTACAATTTTTTCTGATAGTTTCCCCCACGATACTTTTGAGTTAAGTAGTTGTGGGGAAAGTAGAGCTAGGGGACTTCTGTTTGCTAAGGAAATTTGGTTTTAGCTGGTGGTAGAGCAATTAGCAGGCACCTTTGCCTTTGAAGCTTTACTGCCTTGTGGGGAAAGCTAGGGGACGCTTGTTTGCTAAGGAAATTTGTTTATGGGTGGACGCTGGTTATAGGGCAACTAGCTCTGGCACCTTGGCCTCTGAAACTTTGCTGCTCTCTTAAGAGTTTTTTCATAATTCTGTATAACAAGACGTGCATCAATTTGAAAAGTCAAGATTAACGGTTCCTAACACCTCATAGTTCCAATCCCATGCAACATTTTGGTATTTATTTGTTCATGTATGCTTCGTGTTCCGAAGATCAACATGCACAAGTAAGTCATTGATTGATAGTTCATTATAGGTTGGCCCACAGGTCATGTTTAGAGGTCAACTTGAACAGTAAAAAAAAACCAAAATTCACTCTTGGTGCTACTATTCATCTGCAATTTGTGTCAATGTTACTTGAAATCTTTCTTGGAGAAACAACTGTGAAATATATGGATGGTTTTGTGCAGAATATGTTTTTCAATGTCTCCTACTTCGTTGTTCTCTTCAGTTTTGTGTATTCTTCACTGGGCATCATTCATTTCATTGGTTGAGTATACCCATTGGAGCTTTCGTGAGTTACACCATGCTCTATGAAACTTGGTTAGAGTATTCTGATAATATAGCCTGTGATGTTAGGATAAATTTGGCAGGCTACTTGTTCATGAGTGTCGTGTTCTTAAAACTTTCCTTGACTTTGTTCTTTTAATGTCTTCATGTTTAAAGAGAACACTGTAGAGCTCCAATAGTGTCAAGTGAGTTCCTTTTATTTCACAATCGGCTGACACAATCACATTAAATATAGATATGTTACTTGAAGTATTGGATGTCAATCTGCTGTCTGGGTTTGCATAAGAGTATTGAATTCTGCATGAAGATATAATTTGTTCTTTGTTTGCAGCTGAAGCCTTATGTATCTCAATGTCCAATAGAAGTTAAGACAAGTAACAACAACGAATCAGCTAAATCATAAGCGAAGAGGTATGGTATCTTGTAATGCCCCGCATTTTCTTTTCCCAAATTGAATTATTTTAGCACAATTGAGGTATTGCAGTGTTTGATTCATGTCCTAAAATTTAATTTAGCTTCGCTTCTAAGTACGTTTCTACTGACCCATTAGGTAAATATGAGCATCATGATGTTGGCAACGCCGTGGAGGGGACCCAGAAGGAAAAGACCATTAGTTGCTTTTGTTGGATTCTTCTACTAGTTCAGATTCTAGTTCGTGAGTTGAAAACTTGTTTGAAGGAACAAACAATCGACGAGAAAACCAAAACTTTCTTATTTTCACTATATATGAAACACATGTTTTGTTTCAATTTATAAACTTAAAAGTTGAATTCAAAATTTGAAAGCTTTGTGATTTTGAAAATGCCGGAAAAATATGATGTGTGGTAAGATTCACTCTTCAAACGACAAAATCTAATCTAATATAATTATTTCTTATTAACAATCTTGCTTAGTAAATACTTCGAATATGTATATAGTCAATATTGTTCAATTAAATGAAGCTTAATAACAAAAGGTGTAGTTTATTATTCTATAATAAAAATAAGTAAAATTTACTTAGTTTTTTAAGAGTTGTTTTCAAATATAACAAAATGAATCGAACTATTTATAAATATAGAAATTTTTTTCTACTTATTAGGGATAGACTGCGATAAACATCTATCGTTTTGAGTGATTGAACTTTATAAATAATTTGATATGTTTACAATTTATAATAATTTTTTATATATATATTATTTAATGGTAGGCGTTTTACCTTTTAAAAAAATTATTATAAATAGTGTAAATATTAAATTATTTATAAATGTTATCGCGGTCTGTCATTAATAGACAATTAATTTTAGATAATTAATTATTTTATATTTATAAATAATTTGATTTATTTTGTTATATTTGAAAACAATTGTAAATAAAAATTATTGAAAACAAAGATTAACTAGACTATATTGTGAGAGTTTTGAACCTCGTTTATGAAAACTTATTTTCATCGCTTTTCTTGCATCTTCTCTTGTATTTTTAATTTTTTAAGATAAAAATATGAAAATGATCACAAACGAGATGAAAGCCTCAATTTTATTTTATTTTATTTATTTATTTATTTTTATTTGTGTTCATTCCATATTCAAGTTCATATGGTTTACCATGGGATAATTTGTTACATTTCTTGTTTTTGGATTTTTAGATTTTACCATGAGTTATTCGAGTTTTACTCCATAAATTTGAGCATTTTTTTTTTCTTCTTTTTCTTATGAAGTTTTGTAGGGTTGAAATTGAAACGAGTGAGGATCAAATGCTTATAAGACAAAAAGGCAAATCAAGAACAGAAATAGTTTGGAAGTCTGAGGACATTACATAGGCCTCTCGATTATAGGCAATTTGGTTTCAATCCAGGGGGAAATTTTGGGCGATGGAAGATATACAATCACATCGATTTGAGCAATATAAAAATTTGTTTAAAAAACATGCCAATGTTATCCGCCCCCATTAACAAGTGAATGGAGATACTAAGGTAAAATTTTTACAATACTGCCTTAAAATTTTTGACATTAAACTTGCTGAGAAAATATCCTCATTGCATATTTTAGATTAGGTATGCAATCATCACATCGAGGCAAGGTAACAGCATAAAAAATTGTATCAAATGACTTTAATGTTCAGAGTGTTCTTTTTGCCTTGGTCTATATCTAGAATGTTTCGAACTTTCAATAAGTTCTTCAGTTCAATTGATTGATTGTAAGTTTAAATGGAATACTACTTGACAAGTCAGAAAAAATTTTAGACTAAAAGAATTATGCTACTAAAAAATGACAAGTTTCTAATTTCTCCAAGTTTTTGAATTGGGAGGTAACTGCCTTATTTGTATGATTTCTGATGGAAACAAAAATCGAAACTATAAACTAAAACATTCAAGGCCCATGTGAATATATAATCGTATATATGATAAATAAATAAACAATTGTAATGTGGAAATAGCTTATCAATTCTTACGATTTCTTAGCTGAAAAAGGCTGTTCTTCTCCACGCAACGTGAGACAACCAAAAGAAAATAATCCCAGAAGATGTTCTTCAAATCTGGCTTTAGCCAATAAGCATGGAACTGAAATTCAGAGTGGAAAGGAAAGATCTGAACAACCCGCAGCCCGGTTTTGTCACCTGAAAAGCAGTGTAAAATGTTAGTCAAAAACTAAAGAACTCAGTCACTCATCCTTCAATACTCAAAAGGATCTAATAGGCAGCCAAATTTAGACCATCATCTAAATGCAGGATCACAAATGATGCTATTGCTAGACTTGTTTTGAACTACTTGTCACATGGGATCTCATAGTAGACATACCTCTCATTGCGGTTTGATGACGACGACGATGACCACCTCTGATTTCGCCAACGAAGCCGAGAAGAATGAGGGCCACTCTTGTACATGCTTCCGTGTTGCCTACGTGGTTCAGGGGTGTGTGATGTACTCTCAAATGATCTTTGGTGTCTATCAAATGATGTCTGACTCCGCCAACGCAATCGTCGGGATTGAGATGTACTCTCCACTGCCCTTTGCCGTTGATTCTGTCCATGCGGCTGAGTAGCTCGAGGCATATGATGAGACGATCTAAAATCCCGCCGTCGTGCATGTTGGGAATAAGGTCTAGTCTCCAACGACAAATTGTTTCCCACTCCAGTGGAAAAACTCGTATTGAGATCACGTTGCACATTCTCCATTCTCTCTTGCAATGACTCTAAGTCTCTCAAAGCATCCAACATACTGTCTGAAAGCAAGTCCATGAGTGAATCATACATTTCAGTAACAAAGGATGACATCCAAAAACTAATAGCCCTTGTAAAACTTTCTTCATCACCGTCTACAGCATGGTTAGATTGCACTAGACTGAGAACATCCTCAAAATCCCTTTCACGCTGCCATCTCACCCAATCATGGTGACGCACTGGGTCCACCTCTGATGGCCGGACATATGGATGTTCAGACCTGGCATGCTTCCTGAGTTCAGAATATGTCCCGCTAAAATCACATATTTCCAATGAACAACTCCTTACTTTGGAATTCATATATTGGCGAGCAGGCTCTACTACGATATAGCCATATATACCGCCCCGACAAAGAGGGCATATCAACTCTGATGCAAGCTGATTCCTACCAAGTCCATTTTGTACAGCAGGTGGACATTCAACCATTTGTCTGTGAGAGACTGCACGTGTAAAAGGAATTTCTTGCAATTTGGTAATTAAAGGGATTGGTCCATATAACTTACAGAATTGTTCAAAGCAGTTCGAGTGGCGATAGCTGTTGTTGCACATATAAGGCCTGCAACCTCTTTCGTGAGAGGAACATTTTAAAAGAACAGCATTGTGGGGATGTTCCATGCAGATGGGGCACCTAGCTTCCTCCCATTCCTTAACATTTTGAGCTGATTCTAAGGAATTAACATTTTTACACGACTCGGTATGATTTTGGC

mRNA sequence

ATGGTTGAGAGTTTGAAGCCGAGGAAATTTCAAGCAATGCGGAGGAAGCGCACGTCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAAAATTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATATGTAGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTCATTTCAAGCTGAAGCCTTATGTATCTCAATGTCCAATAGAACTAAATCATAAGCGAAGAGGTAAATATGAGCATCATGATGTTGGCAACGCCGTGGAGGGGACCCAGAAGGAAAAGACCATTAGTTGCTTTTGTTGGATTCTTCTACTAGTTCAGATTCTAGTTCTTTTGTAGGGTTGAAATTGAAACGAGTGAGGATCAAATGCTTATAAGACAAAAAGGCAAATCAAGAACAGAAATAGTTTGGAAGTCTGAGGACATTACATAGGCCTCTCGATTATAGGCAATTTGGTTTCAATCCAGGGGGAAATTTTGGGCGATGGAAGATATACAATCACATCGATTTGAGCAATATAAAAATTTGTTTAAAAAACATGCCAATGTTATCCGCCCCCATTAACAAGTGAATGGAGATACTAAGCTGAAAAAGGCTGTTCTTCTCCACGCAACGTGAGACAACCAAAAGAAAATAATCCCAGAAGATGTTCTTCAAATCTGGCTTTAGCCAATAAGCATGGAACTGAAATTCAGAGTGGAAAGGAAAGATCTGAACAACCCGCAGCCCGGTTTTGTCACCTGAAAAGCAGTGTAAAATGTTAGTCAAAAACTAAAGAACTCAGTCACTCATCCTTCAATACTCAAAAGGATCTAATAGGCAGCCAAATTTAGACCATCATCTAAATGCAGGATCACAAATGATGCTATTGCTAGACTTGTTTTGAACTACTTGTCACATGGGATCTCATAGTAGACATACCTCTCATTGCGGTTTGATGACGACGACGATGACCACCTCTGATTTCGCCAACGAAGCCGAGAAGAATGAGGGCCACTCTTGTACATGCTTCCGTGTTGCCTACGTGGTTCAGGGGTGTGTGATGTACTCTCAAATGATCTTTGGTGTCTATCAAATGATGTCTGACTCCGCCAACGCAATCGTCGGGATTGAGATGTACTCTCCACTGCCCTTTGCCGTTGATTCTGTCCATGCGGCTGAGTAGCTCGAGGCATATGATGAGACGATCTAAAATCCCGCCGTCGTGCATGTTGGGAATAAGGTCTAGTCTCCAACGACAAATTGTTTCCCACTCCAGTGGAAAAACTCGTATTGAGATCACGTTGCACATTCTCCATTCTCTCTTGCAATGACTCTAAGTCTCTCAAAGCATCCAACATACTGTCTGAAAGCAAGTCCATGAGTGAATCATACATTTCAGTAACAAAGGATGACATCCAAAAACTAATAGCCCTTGTAAAACTTTCTTCATCACCGTCTACAGCATGGTTAGATTGCACTAGACTGAGAACATCCTCAAAATCCCTTTCACGCTGCCATCTCACCCAATCATGGTGACGCACTGGGTCCACCTCTGATGGCCGGACATATGGATGTTCAGACCTGGCATGCTTCCTGAGTTCAGAATATGTCCCGCTAAAATCACATATTTCCAATGAACAACTCCTTACTTTGGAATTCATATATTGGCGAGCAGGCTCTACTACGATATAGCCATATATACCGCCCCGACAAAGAGGGCATATCAACTCTGATGCAAGCTGATTCCTACCAAGTCCATTTTGTACAGCAGGTGGACATTCAACCATTTGTCTGTGAGAGACTGCACGTGTAAAAGGAATTTCTTGCAATTTGGTAATTAAAGGGATTGGTCCATATAACTTACAGAATTGTTCAAAGCAGTTCGAGTGGCGATAGCTGTTGTTGCACATATAAGGCCTGCAACCTCTTTCGTGAGAGGAACATTTTAAAAGAACAGCATTGTGGGGATGTTCCATGCAGATGGGGCACCTAGCTTCCTCCCATTCCTTAACATTTTGAGCTGATTCTAAGGAATTAACATTTTTACACGACTCGGTATGATTTTGGC

Coding sequence (CDS)

ATGGTTGAGAGTTTGAAGCCGAGGAAATTTCAAGCAATGCGGAGGAAGCGCACGTCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAAAAATTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATATGTAGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTCATTTCAAGCTGAAGCCTTATGTATCTCAATGTCCAATAGAACTAAATCATAAGCGAAGAGGTAAATATGAGCATCATGATGTTGGCAACGCCGTGGAGGGGACCCAGAAGGAAAAGACCATTAGTTGCTTTTGTTGGATTCTTCTACTAGTTCAGATTCTAGTTCTTTTGTAG

Protein sequence

MVESLKPRKFQAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGKYEHHDVGNAVEGTQKEKTISCFCWILLLVQILVLL
Homology
[Close]
BLAST of Clc09G02780 vs. NCBI nr
Match: XP_008461075.1 (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-32
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FK
Sbjct: 11 RVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 70

Query: 71 LKPYVSQCPIELN 84
          LKPYVSQCPIELN
Sbjct: 71 LKPYVSQCPIELN 83

[Close]
BLAST of Clc09G02780 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 7.5e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FK
Sbjct: 11 RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFK 70

Query: 71 LKPYVSQCPIEL 83
          LKPYVSQCPIE+
Sbjct: 71 LKPYVSQCPIEV 82

[Close]
BLAST of Clc09G02780 vs. NCBI nr
Match: XP_022982189.1 (39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FK
Sbjct: 11 RSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFK 70

Query: 71 LKPYVSQCPIELNHKRRGK 90
          LKPYVSQCPIE      G+
Sbjct: 71 LKPYVSQCPIEAKTSEAGE 89

[Close]
BLAST of Clc09G02780 vs. NCBI nr
Match: KAG6608261.1 (39S ribosomal protein L41-A, mitochondrial-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FK
Sbjct: 11 RSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFK 70

Query: 71 LKPYVSQCPIELNHKRRGK 90
          LKPYVSQCPIE      G+
Sbjct: 71 LKPYVSQCPIEATTSEAGE 89

[Close]
BLAST of Clc09G02780 vs. NCBI nr
Match: XP_004135839.1 (39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >KGN45301.1 hypothetical protein Csa_015853 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FK
Sbjct: 11 RVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 70

Query: 71 LKPYVSQCPIEL 83
          LKPYVSQCPIEL
Sbjct: 71 LKPYVSQCPIEL 82

[Close]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS 77
          +SK+ P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Sbjct: 22 TSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFVVPDLTGFKLKPYVS 73

[Close]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-08
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS 77
          +SK  P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Sbjct: 22 TSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFVVPDLTGFKLKPYVS 73

[Close]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-08
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS 77
          +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FKLKPYV+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVN 73

[Close]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-08
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS 77
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FKLKPYV+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFKLKPYVN 72

[Close]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match: P36526 (54S ribosomal protein L27, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL27 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 24  LSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN 83
           L++K+  +  YKG      G HT+ GGYV+  +K+  YV PD+ +F+LKPYV+     L 
Sbjct: 43  LTTKQGNKTMYKGTRASGIGRHTKFGGYVINWKKVRTYVTPDMVNFELKPYVNANVPPLK 102

Query: 84  HKRRG 89
           H+ +G
Sbjct: 103 HEFKG 107

[Close]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match: A0A1S3CEC5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103499774 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.8e-32
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FK
Sbjct: 11 RVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 70

Query: 71 LKPYVSQCPIELN 84
          LKPYVSQCPIELN
Sbjct: 71 LKPYVSQCPIELN 83

[Close]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match: A0A6J1J3V5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481090 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FK
Sbjct: 11 RSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFK 70

Query: 71 LKPYVSQCPIELNHKRRGK 90
          LKPYVSQCPIE      G+
Sbjct: 71 LKPYVSQCPIEAKTSEAGE 89

[Close]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FK
Sbjct: 11 RVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFK 70

Query: 71 LKPYVSQCPIEL 83
          LKPYVSQCPIEL
Sbjct: 71 LKPYVSQCPIEL 82

[Close]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLT FK
Sbjct: 11 RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIVPDLTDFK 70

Query: 71 LKPYVSQCPIEL 83
          LKPYVSQCP E+
Sbjct: 71 LKPYVSQCPTEV 82

[Close]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match: A0A2C9WE14 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G149200 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPNYVVPDLT FK
Sbjct: 11 RAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPNYVVPDLTDFK 70

Query: 71 LKPYVSQCPIEL 83
          LKPYVSQCP E+
Sbjct: 71 LKPYVSQCPREV 82

[Close]
BLAST of Clc09G02780 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          ++ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FK
Sbjct: 13 RSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVVPDLTGFK 72

Query: 71 LKPYVSQCPIELN 84
          LKPYVSQCPI++N
Sbjct: 73 LKPYVSQCPIQVN 85

[Close]
BLAST of Clc09G02780 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 11 QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
          ++ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FK
Sbjct: 13 RSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVVPDLTGFK 72

Query: 71 LKPYVSQCPIELN 84
          LKPYVSQCP+++N
Sbjct: 73 LKPYVSQCPLQVN 85

[Close]
BLAST of Clc09G02780 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-29
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 11  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFK 70
           +  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPNYVVPDLT FK
Sbjct: 85  RTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPNYVVPDLTGFK 144

Query: 71  LKPYVSQCPIELN 84
           LKPYVSQCP+++N
Sbjct: 145 LKPYVSQCPLDVN 156

The following BLAST results are available for this feature:
BLAST of Clc09G02780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461075.15.8e-3294.52PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo][more]
XP_038897038.17.5e-3295.8339S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida][more]
XP_022982189.11.7e-3187.3439S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima][more]
KAG6608261.11.7e-3187.3439S ribosomal protein L41-A, mitochondrial-like protein, partial [Cucurbita argy... [more]
XP_004135839.12.9e-3194.4439S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S... [more]
BLAST of Clc09G02780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DJI43.5e-0853.8539S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a... [more]
Q6INF37.9e-0853.8539S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b... [more]
Q9CQN77.9e-0850.0039S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1... [more]
Q5BJX17.9e-0851.9239S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41... [more]
P365263.9e-0740.0054S ribosomal protein L27, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of Clc09G02780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CEC52.8e-3294.5239S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1J3V58.1e-3287.3439S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0KBX41.4e-3194.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1[more]
A0A6J1CNE91.8e-3193.0639S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A2C9WE143.1e-3193.06Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G149200 PE=3 SV=... [more]
BLAST of Clc09G02780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G39800.11.2e-3284.93Mitochondrial ribosomal protein L27 [more]
AT5G40080.12.8e-3283.56Mitochondrial ribosomal protein L27 [more]
AT4G09012.12.2e-2980.82Mitochondrial ribosomal protein L27 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 24..85
e-value: 6.9E-18
score: 64.5
IPR019189Ribosomal protein L27/L41, mitochondrialPANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 11..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G02780.1Clc09G02780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome