Clc09G02690 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02690
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Histone H2A
Location	ClcChr09: 2200123 .. 2205343 (-)
RNA-Seq Expression	Clc09G02690
Synteny	Clc09G02690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGGGGTTGGGGTTGGGGTTGAGGGCTATTACTTTTATCTACCTCGCTTCCCGTCGCTCCTTATCGGTTCTTTTTCTTTCTCTTCCAACCAAAAAATCTTGTCTTCCCAACTTCTTCCACTGAAAGAGAGAAGAACCCTAATTTTTTGGCTGCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTTCCTCTTTCTTTACACTTCAATACTTCTTTTTCTACCTTCTTTTTGTGGGTCTTCTCTGGATCTGTGTTTCTGCTGCTTGTTTTAGGTCCATGCCTCTTTTCCTTCAACAAACCCATATTTTTTCTAATTTAGATGCGTTTCTGTGTTTAGACATTGGGGGGGGGGGGGGGGGGGGTGGGGAGGTGGGAGTAATTTAAAATTTGTTTTTGAATGTTTATATTTGTTTATATTACAGATGCCAGATGGGTCCTCTTTTTGTTTTTGAATGTTTCTTGTTTTTTCGTCGTTCTTTAAGAGTATGGTGACTTCTAAGTTTGTTTCGTCATGGGTTTTGCTCAGCGGAGTAGAAACAGTACGAGATCGAGTGTTGATGAATATTTAGGAGGTGTTCGTTTGAGAATCTTTAGAGGGTTAGGTATAAGTCATTCTCTTTGATGTTAGAAGTAGGTGCATGCCTTTCGGTCTGTTCTATTTTGAATTTGTTTCTGTGATCCGCCTTTAAGCCTGCGTTTCTTTTGTGAGGCTCGGTTTGTTAATGTTCTTCGGTGGTTGGAGAAATTGTCCTGCGGCCTAGGTTATTTTGTGTAGGTAATGTATTGGGTGGACTTAGACTTAGGCTGATATTGTTCTATTTGTAAGTTTTTAACGTTGGTTGTTGGTAGTAGTATTCCCAAATGAGGTAGGTGCGAGTGTGAAGCATGCATCCAAGATCTTTTTTTCATGCTATTGAAGTTGTCTGTCCAAAGATGTTAGAGGTCAATATATTCAAGGTGGATTGGGATTTGACCATTTTTATGTCTAGATATTTCACAACCATAATTCATTGGTTCCCAGTTCTCGAGGCATTTAGACAACTTATTCGTTTACATGTTGCAAAGTCTTTTCCCTACCGTTAAGAGTGATAGAAACTAGGGCATTGATCTAGCAGTTGTATTGAAATCTTTAAAACATAAAGTACAGTACATTATCCTAAGTAATTTGAGAAACTAAGTACAATGCTTAACCACCATATACCAGCAGGTATATACAACGTTTATCTTAGTGGGATAGAAATACATATTATACTCAAGGTGGGTTTGACCAATAGGTTCTCATGTTGAATACTTTTAGAAACGTATATGGAGCAAAATCAAAAGTGGCAATAAGTCTTCCCTTCTCCACTCTATCGTTTTGTAACGGAATTTAAGTCACTCCTCAATTCTATGGGTACACTCCTAGAAATTTAAAACCTTGTTTAGTTAGCTGTTGCAAATAATCTGTAACAAAAAGCTCACTTCATAGCTTAGTTTGTATAACACATGACCCTATAACTCATCACAACCGTGATACGTGAAATATTTCCTTCTATTGATGGAAATTGAGTCTCAGCAATTCTGTTAAAATTTGGCCCGTGGAGAGATGTACGGGTCCCAAATATCATAAACCAAGACTGAACTAAAAAGCTACCATTAGCCCGTGCCCTTGCTACAGCATCAATGATGTTTTGGCTAGCTGTCTGCCTATTTGCTTGTTTCCCCCCTCCATTGCTATAATATATTCCTCTCTGAAACTTGCAAGTTACGTACTCAGTTCAATCAAGGAAAGGGTTTCTTTGACCTCTCTTCCTTTATGATTTTAGTTCCAAACATTCCTTATGTCACTTGGCGTAGACATCCTTTGGATCTGCTCTCACTTTCATTGACCATTTTTCTTGCTTCAACTGCTCCTTTTTTCACCACGTGTGGCTCAATTGGACATCTGTTGCCTGCCGCTCCACCCCTCTTGCCTCTCGCGTTGTTGTTAGATGGTATGAATCTGTATTTTCTTTGCTTGGTGTGTGCGGTTTTTTAACTCTTTCATCTGGAGGTGGATTTTATTCTGAAAAGGAAAATTTTCTCTTGAATTTGATTTTAGCAAGACATTATTACCCTATAAGTTATTCTTCTGTTAGGTGGCTTCTTTGGCCATCTTGTGGACAATCTTGCTCTAAGGGAACTCCGAAGACAAGAATTTTTAAGGTAAGAGGGGTCTTAGGGAGGAGGCATAGATCCTCGTTCGTGCTTCCCTTTGGGGGCCATCTTCTTATTCTTTGTTTTGTAGCTCTTAATAAGGGTGGGGAATGAATTTTCTAGAGACGTATGTCATGGTATAAGTAAACGTGCTGGGTTTTATCACTGCAGAACAAAATTTTTCTTTCAAGTTTCAATCAGGTGAGGAACACCAAGGTCTAAATTGAGTGCCCCAGTTGAAATATTACGAGACACTTTCAATTTTCTTTGAAAATGAAGTCAAGCACTAAGAGGATTTCAGAGTGCGGGAACTTTGTTAGATTAGGGTATGGCAGAACGGGCTACTCTTTTTTTAGGCAATACTTGCTGGTATTTTCTGTCTGAAACATACTCTAAATCTTTCATGCAAACTTTTTTCTTCGCCCACGTTTACTTTAAATGAACTCTTGGGGGTAGCCAGGATTTGTGTGAACCTAGTGAACGACGAAAATGTGGAAAGTTATGGTAATTGAAATTTATATCTCTCAAAATAGAAATGGAGATGCGGGCTGTTTTAACCAATATTCTTATACACGGCCTCTTTTTATAAATTCTCTGCCACCACAGTGTTGATTGAAAAAGATATTTGGAACTTTTTATGGTAAGGTCTATATCTGGATGGAGAAAATTGTCTCCTATTCCTATGGACTTGGGTGGTCTTGGAATTGGATTTTTGAGTTCGAAAAATACAGCCTTGATTTGTAAAGGTTGTGAAGATATTTGATAGATTAACTCTCTAATTTTGGCATGATCATCATTGATAAATATGGCCAGAAATCTGTTGGGTAGTCTATTACCAACTAACAACAGTGTGGTACTAGAAGCTGTTGGTCAGTTGGTCATCAGTCACAAAAAAAACTGTATACGATTATTTACACCAGCCTAGAATCCCAGTGGTTATATGATTGAAGAGTCTGAAGTGGAAAATTGGATCAAATTATGAAACAACATTTCTAAATTTCAAAGACTGTCAAAACATTGATTGTAGTCATACCATGTATTAACGAGGTGTTGAATGATGAGGATTTGGGGGTTGGACTAAGATTATATAACTTTGGTTGATATGGAATTTTAGAATTGATGACTTCCCTAGTTCCCCATTCTCTCTTCACCCCTAGGGTTTCCTCTGTAGCATAACCCAGAAGTGAGAATTTTGCAGATTGGAAAAGTCTGGGAATTTTGATTTTCTTTTGGTAAGTTCAGTTGATAATCAAGTGCCTTTTGAATGGTCTTGAGTATGTGCAACCCTTTCTTCCCTGAACTCCTTGTTTTTATGCCACCGCAAAATCATCACTTACGTATCATGTAAATAAGGAGTCCTAGCACTGGGCTATTTCCTGCCTCCTGGTGTCTGTTTAGCAATTGGTAAAGTGAAGACCATGAACATGTTTATGGAAAAGCACATTTTTGTATAGTCAAAACTCCTTATGAGGGAATATCAGATGTTTTGACTACATCAATGAGAATAGTCTCTTTCTTCATTCCTGTTGAGGCTTTCTCATTCTTTTTTGCTGGTAATGTCACATTCCAATGAGGAAGGATCTTTTGTTGCATATCACATGTAAGTATCTATCTTGTTGTGCCTTAAATGAATTTTGCCACCTATTTTTTCTTGCTTCTCTTTTGTTCTTTTCTTAAATCTTTTTTTTCACTTCTGATCAATATACAACTTATCATGGACTGAACCATCATGGGTTGGCCTAGTAGTAAAAAATGAGAGATAATCTCAATAAATGGCTAAGAGGTCATGGGTTCAATATATGGTGATCACCTACCTAGGATTTAATATCCTACAAGTTTCCTTGACACCCAAATGTTATATGGTCAGGCGGGTTGTTCCATGAGATTAGTTGATGTGTGGATAAGCTGGCCTGGACACTCATGGATATCAAAAAATAAAATAAAATAAAACATATCATGGGCTGGGTGGATAGATGTCACTAGTAAAGATGAGTATGTAGATTTCACTAGTAAAGATGAGTATGTGATTTTTGTGAATTTTTTAAAGTATAAACTGGTGCTCTTGTAGATATGCTTCAATTCTCTAGCGCTTCTTGCTGTTTATCTTCTGAACTACTAGCTTCTGATTTTCCATGTACATTTTTGTGTTGATGCTTTCCTTTCAATGTTGCATTAGTGGATTCCCTTTCAGTATTACTTTGAAATTTTTGCCACGGATCATAGAGCATTTTCACCTGAGTTTTTATTGCAAATCAGTGTCTTTGATTGAGATGACTTTGTAGCATTTTTATGTGAAGTAATTTTTATGGAAAAAAGATAAGTAGCATTTTGAATGTTTTGGGGTTTTATTAAAAATTTCCCATTTTCTCATTGTTGGGTATGGTGTTGGATGATGCAGTTTCCAGTGGGAAGGGTCCACCGTCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTCGGGGCTACAGCAGCCGTATACACAGCAGCAATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGATACACTGATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGGCTGTTTGTTTTATCTTCATCTTACAGTTTAGTTGAGTGGTTGTCATATGCTCAGTCATGTCATTGTCCGGTCTAATTTAGTATTGTCATATTATCAAATTCTACTTTTGTGATGATTACTTCTACCATTGAAGAGTAGGGGGAGGAGATAAGAAGTTGTTTCTCGTTTTGTAAGTTTTTCATTTTTAGTCACTTCGGACTCTGGGTTGCTTTGACACTGTTCAATTCCAATTTACTTACCTGCCAATGTAATTGATGACTTCGCAT

mRNA sequence

GGTTGGGGTTGGGGTTGGGGTTGAGGGCTATTACTTTTATCTACCTCGCTTCCCGTCGCTCCTTATCGGTTCTTTTTCTTTCTCTTCCAACCAAAAAATCTTGTCTTCCCAACTTCTTCCACTGAAAGAGAGAAGAACCCTAATTTTTTGGCTGCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGCGGAGTAGAAACAGTACGAGATCGAGTGTTGATGAATATTTAGGAGGTGTTCGTTTGAGAATCTTTAGAGGGTTAGTTCCAAACATTCCTTATGTCACTTGGCGTAGACATCCTTTGGATCTGCTCTCACTTTCATTGACCATTTTTCTTGCTTCAACTGCTCCTTTTTTCACCACGTGTGGCTCAATTGGACATCTGTTGCCTGCCGCTCCACCCCTCTTGCCTCTCGCGTTGTTGTTAGATGCAAGACATTATTACCCTATAAGTTATTCTTCTGTTAGGTGGCTTCTTTGGCCATCTTGTGGACAATCTTGCTCTAAGGGAACTCCGAAGACAAGAATTTTTAAGTTTCCAGTGGGAAGGGTCCACCGTCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTCGGGGCTACAGCAGCCGTATACACAGCAGCAATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGATACACTGATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGGCTGTTTGTTTTATCTTCATCTTACAGTTTAGTTGAGTGGTTGTCATATGCTCAGTCATGTCATTGTCCGGTCTAATTTAGTATTGTCATATTATCAAATTCTACTTTTGTGATGATTACTTCTACCATTGAAGAGTAGGGGGAGGAGATAAGAAGTTGTTTCTCGTTTTGTAAGTTTTTCATTTTTAGTCACTTCGGACTCTGGGTTGCTTTGACACTGTTCAATTCCAATTTACTTACCTGCCAATGTAATTGATGACTTCGCAT

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGCGGAGTAGAAACAGTACGAGATCGAGTGTTGATGAATATTTAGGAGGTGTTCGTTTGAGAATCTTTAGAGGGTTAGTTCCAAACATTCCTTATGTCACTTGGCGTAGACATCCTTTGGATCTGCTCTCACTTTCATTGACCATTTTTCTTGCTTCAACTGCTCCTTTTTTCACCACGTGTGGCTCAATTGGACATCTGTTGCCTGCCGCTCCACCCCTCTTGCCTCTCGCGTTGTTGTTAGATGCAAGACATTATTACCCTATAAGTTATTCTTCTGTTAGGTGGCTTCTTTGGCCATCTTGTGGACAATCTTGCTCTAAGGGAACTCCGAAGACAAGAATTTTTAAGTTTCCAGTGGGAAGGGTCCACCGTCAACTGAAGTCAAGGGTTGCTGCAAACGGACGGGTCGGGGCTACAGCAGCCGTATACACAGCAGCAATCTTGGAGTACCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGATACACTGATTAAAGGAACCATTGCTGGTGGAGGAGTCATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRGLVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARHYYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Homology

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BLAST of Clc09G02690 vs. NCBI nr
Match: XP_031744223.1 (probable histone H2A variant 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52
Identity = 131/192 (68.23%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTA-PFFTTCGSIG-HLLPAAPPLLPLALLLDA 120
           L PNIP VT  RHPLDL S SLTI L S A  FFT C  +    LP              
Sbjct: 3   LFPNIPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLP-------------- 62

Query: 121 RHYYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAV 180
           RH              PSC   C         + FPVGRVHRQLKSRVAANGRVGATAAV
Sbjct: 63  RH--------------PSCLSHC--------CYMFPVGRVHRQLKSRVAANGRVGATAAV 122

Query: 181 YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH 240
           YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH
Sbjct: 123 YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPH 158

Query: 241 IHKSLINKSSKE 251
           IHKSLINKSSKE
Sbjct: 183 IHKSLINKSSKE 158

[Close]

BLAST of Clc09G02690 vs. NCBI nr
Match: KAF8393275.1 (hypothetical protein HHK36_021516 [Tetracentron sinense])

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-50
Identity = 149/280 (53.21%), Postives = 168/280 (60.00%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVR--LRIF 60
           MSGKGAKGL MGKS + NKDKDKKKPVSRSSRAGLQ        S+ E   G    +R+ 
Sbjct: 1   MSGKGAKGLTMGKSPA-NKDKDKKKPVSRSSRAGLQE-----EGSLMEMGAGRENTVRVV 60

Query: 61  RGLVPNIPYVTWRRHPLDLLSLSLTIFL-----------------ASTAPFFTTCGSIGH 120
           +  V  I    W      +L   L  FL                   T      C   G 
Sbjct: 61  QQFVLKIENCRW------VLVKKLATFLVCEGGTREEDRELPHSGTHTCKEAENCCRPGE 120

Query: 121 LLPAAP--------PLLPLA---LLLDARHYYPISYSSVRWLLWPSCGQSCSKGTPKTRI 180
           +   +         P++ +    L LD   +      S R+LL       C     +   
Sbjct: 121 IRERSSLFKMGGYLPVINIRNCYLYLDGHLHESALTRSFRYLL---VVLFC-----RVEK 180

Query: 181 FKFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 240
           F+FPVGR+HR LKSR+AANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 181 FRFPVGRIHRLLKSRIAANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 240

Query: 241 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK+
Sbjct: 241 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKD 260

[Close]

BLAST of Clc09G02690 vs. NCBI nr
Match: KAG6772761.1 (hypothetical protein POTOM_024181 [Populus tomentosa])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-49
Identity = 132/250 (52.80%), Postives = 146/250 (58.40%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGL+  K+ + +KDKDKKKP SRSSRAGLQR                R+ +   
Sbjct: 202 MSGKGAKGLLTSKTPAQSKDKDKKKPTSRSSRAGLQR----------------RIEVLTK 261

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
            +  +  + W      L+SLS  IF                                   
Sbjct: 262 KMSQLNVIAWMLLCTKLVSLSSAIF----------------------------------- 321

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                     W  W    +           FKFPVGR+HR LKSR  A+GRVGATAAVY+
Sbjct: 322 ----------W--WRHAIED----------FKFPVGRIHRLLKSRATAHGRVGATAAVYS 378

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 382 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 378

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 442 KSLINKSSKE 378

[Close]

BLAST of Clc09G02690 vs. NCBI nr
Match: KAB5553308.1 (hypothetical protein DKX38_010619 [Salix brachista])

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-49
Identity = 137/262 (52.29%), Postives = 158/262 (60.31%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQR--------SRNSTR----SSVDE 60
           MSGKGAKGL+  K+ + +KDKDKKKP SRSSRAGLQ         +++S        V E
Sbjct: 1   MSGKGAKGLLTSKTPAQSKDKDKKKPTSRSSRAGLQAFGCCFEMLNKDSLELGELEVVKE 60

Query: 61  YLGGVRLRIFRGLVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPP 120
              G++LR    L     YV + R    ++ L     L +   F  +C            
Sbjct: 61  MNLGIQLRTLWRL-----YVFFIRVLNTIMELFRFYQLTAKVCFIVSCNL---------- 120

Query: 121 LLPLALLLDARHYYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAA 180
                          + YS      W       +K   +    +FPVGR+HR LKSR  A
Sbjct: 121 ---------------LMYS------WLVSEMLLNKDFHELEFLEFPVGRIHRLLKSRATA 180

Query: 181 NGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 240
           +GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG
Sbjct: 181 HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 226

Query: 241 TIAGGGVIPHIHKSLINKSSKE 251
           TIAGGGVIPHIHKSLINKSSKE
Sbjct: 241 TIAGGGVIPHIHKSLINKSSKE 226

[Close]

BLAST of Clc09G02690 vs. NCBI nr
Match: KAG6770699.1 (hypothetical protein POTOM_026388 [Populus tomentosa])

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-49
Identity = 132/250 (52.80%), Postives = 146/250 (58.40%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGL+  K+ + +KDKDKKKP SRSSRAGLQR                R+ +   
Sbjct: 1   MSGKGAKGLLTSKTPAQSKDKDKKKPTSRSSRAGLQR----------------RIEVLTI 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
            +  +  + W      L+SLS  IF                                   
Sbjct: 61  KMSQLNVIAWMLLCTKLVSLSSAIF----------------------------------- 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                     W  W    +           FKFPVGR+HR LKSR  A+GRVGATAAVY+
Sbjct: 121 ----------W--WRHAIED----------FKFPVGRIHRLLKSRATAHGRVGATAAVYS 177

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 177

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 241 KSLINKSSKE 177

[Close]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.6e-46
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 41  QFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 100

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 101 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139

[Close]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-45
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK R  ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 39  QFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 98

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 99  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137

[Close]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.3e-45
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLKSR +A+GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 40  QFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 99

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct: 100 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138

[Close]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-45
Identity = 91/99 (91.92%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 38  QFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRH 97

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 98  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.5e-45
Identity = 120/250 (48.00%), Postives = 129/250 (51.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHR LK+R  A+GRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRLLKTRSTAHGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKS+KE
Sbjct: 241 KSLINKSAKE 134

[Close]

BLAST of Clc09G02690 vs. ExPASy TrEMBL
Match: A0A5N5ME32 (Histone H2A OS=Salix brachista OX=2182728 GN=DKX38_010619 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 137/262 (52.29%), Postives = 158/262 (60.31%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQR--------SRNSTR----SSVDE 60
           MSGKGAKGL+  K+ + +KDKDKKKP SRSSRAGLQ         +++S        V E
Sbjct: 1   MSGKGAKGLLTSKTPAQSKDKDKKKPTSRSSRAGLQAFGCCFEMLNKDSLELGELEVVKE 60

Query: 61  YLGGVRLRIFRGLVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPP 120
              G++LR    L     YV + R    ++ L     L +   F  +C            
Sbjct: 61  MNLGIQLRTLWRL-----YVFFIRVLNTIMELFRFYQLTAKVCFIVSCNL---------- 120

Query: 121 LLPLALLLDARHYYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAA 180
                          + YS      W       +K   +    +FPVGR+HR LKSR  A
Sbjct: 121 ---------------LMYS------WLVSEMLLNKDFHELEFLEFPVGRIHRLLKSRATA 180

Query: 181 NGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 240
           +GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG
Sbjct: 181 HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 226

Query: 241 TIAGGGVIPHIHKSLINKSSKE 251
           TIAGGGVIPHIHKSLINKSSKE
Sbjct: 241 TIAGGGVIPHIHKSLINKSSKE 226

[Close]

BLAST of Clc09G02690 vs. ExPASy TrEMBL
Match: A0A6J1DGE3 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 6.6e-49
Identity = 134/250 (53.60%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHRQLKSRVAANGRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRQLKSRVAANGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 241 KSLINKSSKE 134

[Close]

BLAST of Clc09G02690 vs. ExPASy TrEMBL
Match: A0A6J1JQN2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 133/250 (53.20%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHRQLK+RVAANGRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRQLKTRVAANGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 241 KSLINKSSKE 134

[Close]

BLAST of Clc09G02690 vs. ExPASy TrEMBL
Match: A0A6J1GMV1 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 133/250 (53.20%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHRQLK+RVAANGRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRQLKTRVAANGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 241 KSLINKSSKE 134

[Close]

BLAST of Clc09G02690 vs. ExPASy TrEMBL
Match: A0A5D3CH66 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 133/250 (53.20%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHRQLKSRVAANGRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRQLKSRVAANGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKSSKE
Sbjct: 241 KSLINKSSKE 134

[Close]

BLAST of Clc09G02690 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-46
Identity = 91/99 (91.92%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 38  QFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRH 97

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 98  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]

BLAST of Clc09G02690 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 181.8 bits (460), Expect = 6.8e-46
Identity = 120/250 (48.00%), Postives = 129/250 (51.60%), Query Frame = 0


Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQRSRNSTRSSVDEYLGGVRLRIFRG 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ                        
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQ------------------------ 60

Query: 61  LVPNIPYVTWRRHPLDLLSLSLTIFLASTAPFFTTCGSIGHLLPAAPPLLPLALLLDARH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 YYPISYSSVRWLLWPSCGQSCSKGTPKTRIFKFPVGRVHRQLKSRVAANGRVGATAAVYT 180
                                           FPVGRVHR LK+R  A+GRVGATAAVYT
Sbjct: 121 --------------------------------FPVGRVHRLLKTRSTAHGRVGATAAVYT 134

Query: 181 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 240
           AAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH
Sbjct: 181 AAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 134

Query: 241 KSLINKSSKE 251
           KSLINKS+KE
Sbjct: 241 KSLINKSAKE 134

[Close]

BLAST of Clc09G02690 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 38  QFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRH 97

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 98  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Clc09G02690 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 38  QFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRH 97

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 98  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]

BLAST of Clc09G02690 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 152 KFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRH 211
           +FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 38  QFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRH 97

Query: 212 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 251
           LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 98  LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

The following BLAST results are available for this feature:

BLAST of Clc09G02690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744223.1	1.2e-52	68.23	probable histone H2A variant 3 isoform X1 [Cucumis sativus]	[more]
KAF8393275.1	2.5e-50	53.21	hypothetical protein HHK36_021516 [Tetracentron sinense]	[more]
KAG6772761.1	1.2e-49	52.80	hypothetical protein POTOM_024181 [Populus tomentosa]	[more]
KAB5553308.1	2.1e-49	52.29	hypothetical protein DKX38_010619 [Salix brachista]	[more]
KAG6770699.1	2.1e-49	52.80	hypothetical protein POTOM_026388 [Populus tomentosa]	[more]

BLAST of Clc09G02690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S857	6.6e-46	93.94	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]
Q84MP7	1.9e-45	93.94	Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
Q8H7Y8	3.3e-45	92.93	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
O23628	4.3e-45	91.92	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
Q9C944	9.5e-45	48.00	Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1...	[more]

BLAST of Clc09G02690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5ME32	1.0e-49	52.29	Histone H2A OS=Salix brachista OX=2182728 GN=DKX38_010619 PE=3 SV=1	[more]
A0A6J1DGE3	6.6e-49	53.60	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1	[more]
A0A6J1JQN2	1.5e-48	53.20	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1	[more]
A0A6J1GMV1	1.5e-48	53.20	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1	[more]
A0A5D3CH66	1.5e-48	53.20	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 P...	[more]

BLAST of Clc09G02690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54560.1	3.0e-46	91.92	histone H2A 11	[more]
AT1G52740.1	6.8e-46	48.00	histone H2A protein 9	[more]
AT2G38810.1	2.6e-45	89.90	histone H2A 8	[more]
AT2G38810.3	2.6e-45	89.90	histone H2A 8	[more]
AT2G38810.2	2.6e-45	89.90	histone H2A 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 200..214 score: 65.78 coord: 141..163 score: 39.54 coord: 171..186 score: 71.55 coord: 186..199 score: 84.63 coord: 227..245 score: 51.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 138..250 e-value: 2.1E-56 score: 203.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 143..246 e-value: 6.58115E-52 score: 162.89
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 139..250 e-value: 3.4E-47 score: 161.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 152..227
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 220..249 e-value: 2.1E-10 score: 40.2
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 148..219 e-value: 7.7E-18 score: 65.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 151..248
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 151..248
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 2..36
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02690.2	Clc09G02690.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity