Clc09G02450 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02450
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	thionin-like protein 2
Location	ClcChr09: 1961419 .. 1964853 (-)
RNA-Seq Expression	Clc09G02450
Synteny	Clc09G02450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAGCAGCATGGCAATGAAATGGGGTTTAATGGGTTGGCTGTTGCTGTCCTCGCTCTCCATGGCCAATTCCAATTTTCTAGATTGCTACCACTCCTGCTTCGTCATGTGCGTCATCACCCCCGGCGTCTCCTTCCTCGACTGCCCCTCCAGATGCTTGCATTCATGCATGTCCCCATCTACCAAAAACGCCAAGTTCCATCACCAACATCAACATCAGAATCAACTCTTCTGCAACCTCGGTTGCGCAACTTCCTCCTGTACCAACTTTAGCACAAAGGACAATCCAGGTCTTTCAAATCTACACTCCCTTCTTCTCTCATTAATTCTATTTAATAATGTTATGCATTATTTTATTATTTTAGTGTTGTTTTCTCTCCAATTAAAATTAATTTCCACATTTTAACATTATTATTTTTGGTGGTGCTAGGTTTTGGATTTGATTTCAAACCTAATCCTAAATTGAAATCAAACTATAATATTTTTAAATGTTGAGATCAAATGAAAATATATGTAAAATCTAAATTGTTTGTTTTGTTTTGTTTTGTTGATGCAGCTGAAAAAGAAGTGGGGAGCTGTGTGGATTCTTGCACTCAAACATGTTCCATGAATTGATGATCTGCATCTACTAAATGAAGCCAATCAACTATTTTTTGTTTTTTGTTTTTTTCATTTTTTTTTTCTTTGAAAAAATAAGTTCACACTTGTAAGTAATATAATTGTGTTTTATTATAAATGAAACTACATTATTGTTGGAATTAATTTCTTTCCCTACTAAAGAAATTAAAGATTGGGTTTATATTTTAAATTTTAGATCATGTTTGATAATTATAATTGGTTATGTTTTTTTATAAAATTAAGTTTATAATACTACTTTTTCTTTTGATTTTTTTTTTTGTTTTTGTTTTATTATCTACTCATTAGGAATATTTTAAAAAATTAAGGTCTTGTTTGGTAATATTTTATTTTTTATTTTTGAAATTTATTTATTTATTTATAGAATTTGGTTAAGAATTCCAATCTTTAATTATGAAAAAAATGAAACCTTTTAAGGAAGTGGTAAGAAAACAAACACAATTTTTAATTAACAAAAACTCAAATGGTTACCAAACCGATTCACTAGTCTATTAGTGTCTATTACCAAATGCAGGTAATTATTTTAAATAACAAAATTGTTGAAAATATTTTTAAATATATAGGTCTATCACGATTTATTATTGTATATGTTATTATATTTGAAAACAACCCTTTAAATAAATTAAATATAAAATATAATACTATAAATAATGGAAGTTGAAAAAAGTGTTTTTTTTAATAATAAAAGAATATCTAAGACACCGGAAAACTTGGTTTTTTCTTTTTTCTTTTTTTTTTTTAATAAAAAAATGTAAAAAAAATTATTTCTCTCAAATTAAATTTTATAGTGAAAATCTTGTAACACAAATATAGGTAAATTTTCTGTCATAAGTACCCCTCACCATTTGAGAGAGCTAACATTTTCACCTTTCTTCCGTTTTTCTAATTAGTATCTACTTTTTAAGTTCTCAATTAGATGTCTTCTCAATTTTTGTTTAACAAGTTAAGCATGTAAAAACTCGATAGAAAGCGAGCTTAGTTTAGTGGTGATTTGGTGATTGGATAACGTTTCATCTTAGAGTTGGAAGGTTCAAATTGGTTATACTAAAAAAAGAAGTGAAAACTTAATGCTAAATCTTATATTTTTAAAATTCTCAATCAGAATTCTCCTCAACTTGTAAAGCTGAGCAAATGGAAAGTTGTATTGTCTATTGAACAATAAAATTAGTTGCAATACCTCCCATCCTCATCTATCTCATACGTTGTTTATGTTTATGGAAAAAAAATAAAATAAAAATAAAAAAGAATATCATATATAAGTACATGGAAGATGAGAATCTTGATCTTGCTTCTTTGATTTTAAATTTTTACGAGTTCCTCATCCTATTCAGTAAATTAATATAGTTTATCATTGAAATACTTTGAAAGCAAAATCTAAAATTTGATATATTTGCAAATTTTTTTTGCATTGCTCTATATTTGGAAATACTTTAAATTTGATTGCTATATTTGCAACTATCTCTTTTATTTACTTGAGATTTCTTGATGATTTATAATTTTCTTTTTTAAAAATTAAAGATTTAAATAGTCGGCTAATCTTTTCTCATTAAGGAGTTATTTGGTTAGATGGTTTTTTTTGGATGAGAATTTACACAAATATCCAAAACTCGTACAAAATTTTTTACAAAATACTAGTACTATCTCCTATGCACAACCAAACACACATCTTATCCAATGCAAAATAGCGCCTAAGATAATTTGTTTTATCTAGATTCCCTAAACCATATGTTAGTTTAGATTAAAAATATTAATCTTTTCCAACCGTGAATTAATTTAATATTGTTGAAATCTATCCCATAGGGTTGAAAATATTGCGATCATTGTATACTAATTTTGTTTCAAGATTTCCAGTTTGTTTTCAAATATAATTAAGTTAAGGATATTAAATCGAGTTTACATTTTATTATGTTTTGTAAATATTTTAGTTAATCTTTCTATATTAGAAAAGAACCCAATCTATTTTTTTCCTTTTAGTAACAAATATTTTTTTTTTCGTTTTTAGTTAATTTTAGGGAATGAAAGTTAGTTAACTATTTTAAAAATAGATATGTTTAAATTTAGGTTCAAATCAACTGCCTAAAGTTGCAGCTATATAAGTGTCTCCACCCGAGAAGAAAAAGGGAGAAAACAAATTAATTAAGGCTTCATTTTCATCTCATCAGTCATCAATGGAGAGCAGCATCATGGCAAAAAATTGGGCTATAATGGGTTTACTGGTGCTGAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGGTTCCAAATCATACTCTTTACTTTTACTTATATATTTTATTACTAAACATCAAATTTTATAAATCTACCCCATTATTCTAAATAATGAGTGATTAGGTGCATCTAATACATACTCCTTAAAAAAAATTCTCTTTTAAAAGAAGGGAGGGAAATGTTTAAAATAATATTTTAAAAAAATTCTCTTTAATTTGTTTTCTTAACATTTTTTATTTGGAAAATTTATTGTTTGGTTCATATGTGAAGGTATCTTTGTTTTGTTTTGTTGATGCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGA

mRNA sequence

ATGGAGAGCAGCAGCATGGCAATGAAATGGGGTTTAATGGGTTGGCTGTTGCTGTCCTCGCTCTCCATGGCCAATTCCAATTTTCTAGATTGCTACCACTCCTGCTTCGTCATGTGCGTCATCACCCCCGGCGTCTCCTTCCTCGACTGCCCCTCCAGATGCTTGCATTCATGCATGTCCCCATCTACCAAAAACGCCAAGTTCCATCACCAACATCAACATCAGAATCAACTCTTCTGCAACCTCGGTTGCGCAACTTCCTCCTGTACCAACTTTAGCACAAAGGACAATCCAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGA

Coding sequence (CDS)

ATGGAGAGCAGCAGCATGGCAATGAAATGGGGTTTAATGGGTTGGCTGTTGCTGTCCTCGCTCTCCATGGCCAATTCCAATTTTCTAGATTGCTACCACTCCTGCTTCGTCATGTGCGTCATCACCCCCGGCGTCTCCTTCCTCGACTGCCCCTCCAGATGCTTGCATTCATGCATGTCCCCATCTACCAAAAACGCCAAGTTCCATCACCAACATCAACATCAGAATCAACTCTTCTGCAACCTCGGTTGCGCAACTTCCTCCTGTACCAACTTTAGCACAAAGGACAATCCAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGA

Protein sequence

MESSSMAMKWGLMGWLLLSSLSMANSNFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPSTKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNPAGSPWPIPNLFKTATAPASWYAQSRPASPSPTAPRDACVLASPPLILPWATPMSILNKKIISTASSAVQLPGVLSTAQRIIQLPKKWGAVWILALKHVP

Homology

[Close]

BLAST of Clc09G02450 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-23
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 6   MAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPSTK 65
           MA KW L+ WLLLSSLS ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS  
Sbjct: 1   MAKKWALIAWLLLSSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFP 60

Query: 66  NAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNPA 100
                   Q QNQ FC LGCA SSCT FSTK NPA
Sbjct: 61  IDNNDVHRQEQNQFFCKLGCAVSSCTKFSTKQNPA 95

[Close]

BLAST of Clc09G02450 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 6.0e-23
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 6   MAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS-- 65
           +A KW LM WLLL+SLS ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS  
Sbjct: 5   LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFP 64

Query: 66  TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNP 99
             +A   H+ Q QN  FC LGCA SSCT FSTK NP
Sbjct: 65  IDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNP 100

[Close]

BLAST of Clc09G02450 vs. NCBI nr
Match: XP_038896425.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 4   SSMAMKWGLMGWLLLSSLSMANSN------FLDCYHSCFVMCVITPGVSFLDCPSRCLHS 63
           SSMAMKW LM  LLLSSLS+ANS       F +CY SCF +C + P +   DCP RCLHS
Sbjct: 3   SSMAMKWALMACLLLSSLSIANSEPANSEPFQECYSSCFGVCSLGPSIYIFDCPLRCLHS 62

Query: 64  CMS-PSTKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNPA 100
           C++ PS  NA+FH   Q  +Q +C LGCATS+CT F TK+ PA
Sbjct: 63  CIALPSNDNAEFHQPQQQHHQFYCKLGCATSTCTGFGTKEKPA 105

[Close]

BLAST of Clc09G02450 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 8.6e-22
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 6   MAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS-- 65
           +A KW LM WLLL+SLS ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS  
Sbjct: 5   LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFP 64

Query: 66  TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNP 99
             +    H+ + QN  FC LGCA SSCT FSTK NP
Sbjct: 65  IDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNP 100

[Close]

BLAST of Clc09G02450 vs. NCBI nr
Match: XP_023547567.1 (thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 5   SMAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS- 64
           S   K GLM WL+LSSL+ ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS 
Sbjct: 3   SCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSF 62

Query: 65  -TKNAKFHHQH-QHQNQLFCNLGCATSSCTNFSTKDNPA 100
              NA     H Q +NQ FC LGCATSSCT FST  NPA
Sbjct: 63  PIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPA 101

[Close]

BLAST of Clc09G02450 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 6   MAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS-- 65
           +A KW LM WLLL+SLS ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS  
Sbjct: 5   LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFP 64

Query: 66  TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNP 99
             +A   H+ Q QN  FC LGCA SSCT FSTK NP
Sbjct: 65  IDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNP 100

[Close]

BLAST of Clc09G02450 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 6   MAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS-- 65
           +A KW LM WLLL+SLS ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS  
Sbjct: 5   LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFP 64

Query: 66  TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNP 99
             +    H+ + QN  FC LGCA SSCT FSTK NP
Sbjct: 65  IDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNP 100

[Close]

BLAST of Clc09G02450 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 5   SMAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS- 64
           S   K GLM WL+LSSL+ ANS +F +CY +CF++C ITPGV+F DCP RCL +C+ PS 
Sbjct: 3   SCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSF 62

Query: 65  -TKNAKFHHQH-QHQNQLFCNLGCATSSCTNFSTKDNPA 100
              NA     H Q +NQ FC LGCA SSCT FST+ NPA
Sbjct: 63  PIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPA 101

[Close]

BLAST of Clc09G02450 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 5   SMAMKWGLMGWLLLSSLSMANS-NFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS- 64
           S   K GLM WL+LSSL+ ANS +F +CY +CFV+C ITPGV+F DCP RCL +C+ PS 
Sbjct: 3   SCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSF 62

Query: 65  ---TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNPA 100
                 A      Q +NQ FC LGCA SSCT FST  NPA
Sbjct: 63  PIHNAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPA 102

[Close]

BLAST of Clc09G02450 vs. ExPASy TrEMBL
Match: A0A6J1CW29 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 9   KWGL---MGWLLLSSLSMA---NSNFLDCYHSCFVMCVITPGVSFLDCPSRCLHSCMSPS 68
           KWGL   M WL++ S  M    +++F +CY +CFV+C ITPG SF +CP +CL +C+ PS
Sbjct: 7   KWGLSTVMVWLVVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPS 66

Query: 69  --------TKNAKFHHQHQHQNQLFCNLGCATSSCTNFSTKDNPA 100
                   T  A     H H    FC LGCA + CTNF+T  NPA
Sbjct: 67  FPIDDAAATATAADRRTHNH---FFCKLGCAATLCTNFTTNHNPA 108

The following BLAST results are available for this feature:

BLAST of Clc09G02450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899383.1	3.5e-23	62.11	thionin-like protein 2 [Benincasa hispida]	[more]
XP_011659556.1	6.0e-23	60.42	thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01...	[more]
XP_038896425.1	2.3e-22	56.31	thionin-like protein 2 [Benincasa hispida]	[more]
XP_008461039.1	8.6e-22	58.33	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
XP_023547567.1	1.2e-20	59.60	thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like...	[more]

BLAST of Clc09G02450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G02450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K781	2.9e-23	60.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
A0A1S3CDU4	4.2e-22	58.33	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]
A0A6J1JZ84	3.9e-20	57.58	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1	[more]
A0A6J1GMH5	1.1e-19	56.00	thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1	[more]
A0A6J1CW29	9.3e-14	44.76	thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1	[more]

BLAST of Clc09G02450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 6..100
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 6..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02450.2	Clc09G02450.2	mRNA