Clc09G02250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	translation machinery-associated protein 7
Location	ClcChr09: 1803619 .. 1804784 (-)
RNA-Seq Expression	Clc09G02250
Synteny	Clc09G02250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTAGATGTAATCTTACTTTACTATGGATGAGAATCCAAGAATTGTGGGTAAAACAATTAAGGTAATCTTGTTCAGAGTAAGGATTGCTTGCCACCAAAAACCTTGGATCCTTGGGAATGAGAAATGGTGAAGCAAAAGCAATAACCTTTGCCAATAAAAGGACGAACAATGGAAGGATTGAGGCATTGAGCAGCTACCCTTTTCGTCTTCCACCAGATGAAAAAGTGAAGGCATCAGTGCATTAATCGTAGGCCGTTTGAGTCCTGACTAATAAACTTGAAAGAATTTCTTTGGCTTCCTCTTACTCCTCTACATCTAAATTGGGCAAATGAAGTCTTAGTGGTGTTGTAAAGGATTTCATGCTTAAAAAGTTTCAAATGTGGGGTACCCACCTTCAGGTTCTTATCAAAATTCCTTTAGGAGAAAAGAAGTTTATTTGTAAGTAATGTGCACCTGATTTATAGGTTTGACGTAGCTTTTTGCCTTTTTCGCTATGAACTAAGACATTTTGTATTATTTTCCAAATTTTTAGTACAACAAGTGGTCATTTTTGTCCATTCCATTCGCTGCAACTATCTTTACCTTAATTGGTTGTGGAGAATGTTGTTTTGTAGTTAGCCAAGTAGCACGGTAAGGTAGTTGTTAAAAGGGCCCGTAATATTTTCAGAATGACGGTTTGAATTTTACTGGATTTTCTCAACAGGTGGATCTGGCGAATATTCAAAAGAAGAAGGAAGAGGAAAAGGTGAGAACCTGAACTTGAAAGTTGAAACTGTCCCACAATCTTCTGGTCGTTTCGAAGGTTGCTACCAACTATAGTTTTGAGTTTGATGTTATGCAGGCGCTCAGGGAACTTAGAGCGAAGGCCCAACAGAAGGGGACCTTTGGAGGTTCTGGCCTGAAGAAGAGTGGGAAGAAATGAGAGTTGTTCCCTACACGATGTATGTAGATTACTTGTGCTGAAATTACAGGCTCCTGATGTCTTATTGATCAATTGATTGTGTGACATGTTATACTCTGCTGCATGAATGCATGAATCCGAATAATGTAAACTCGAACTCGTTCCTACTTTCTTGTTCTGTTGTGTAAGTAAAAACCTGGAAGATCCTATGCTTGTGTCCTTGGTTTCTTGAATGGAATGAATATAGAGGCTGGAGCT

mRNA sequence

ATGGGAAGATTGCTTGCCACCAAAAACCTTGGATCCTTGGGAATGAGAAATGGTGAAGCAAAAGCAATAACCTTTGCCAATAAAAGGACGAACAATGGAAGGATTGAGGCATTGAGCAGCTACCCTTTTCGTCTTCCACCAGATGAAAAAGTGAAGGCATCAGTGGATCTGGCGAATATTCAAAAGAAGAAGGAAGAGGAAAAGGCGCTCAGGGAACTTAGAGCGAAGGCCCAACAGAAGGGGACCTTTGGAGGTTCTGGCCTGAAGAAGAGTGGGAAGAAATGAGAGTTGTTCCCTACACGATGTATGTAGATTACTTGTGCTGAAATTACAGGCTCCTGATGTCTTATTGATCAATTGATTGTGTGACATGTTATACTCTGCTGCATGAATGCATGAATCCGAATAATGTAAACTCGAACTCGTTCCTACTTTCTTGTTCTGTTGTGTAAGTAAAAACCTGGAAGATCCTATGCTTGTGTCCTTGGTTTCTTGAATGGAATGAATATAGAGGCTGGAGCT

Coding sequence (CDS)

ATGGGAAGATTGCTTGCCACCAAAAACCTTGGATCCTTGGGAATGAGAAATGGTGAAGCAAAAGCAATAACCTTTGCCAATAAAAGGACGAACAATGGAAGGATTGAGGCATTGAGCAGCTACCCTTTTCGTCTTCCACCAGATGAAAAAGTGAAGGCATCAGTGGATCTGGCGAATATTCAAAAGAAGAAGGAAGAGGAAAAGGCGCTCAGGGAACTTAGAGCGAAGGCCCAACAGAAGGGGACCTTTGGAGGTTCTGGCCTGAAGAAGAGTGGGAAGAAATGA

Protein sequence

MGRLLATKNLGSLGMRNGEAKAITFANKRTNNGRIEALSSYPFRLPPDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK

Homology

[Close]

BLAST of Clc09G02250 vs. NCBI nr
Match: XP_022145738.1 (translation machinery-associated protein 7 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 31 NNGRIEALSS------YPFRLPP-DEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTF 90
          N  +I A+SS       P + P  D+K    VD+ANIQKKK+EEKALRELRAKAQQKGTF
Sbjct: 28 NPSKISAMSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKALRELRAKAQQKGTF 87

Query: 91 GGSGLKKSGKK 95
          GG+GLKKSGKK
Sbjct: 88 GGAGLKKSGKK 98

[Close]

BLAST of Clc09G02250 vs. NCBI nr
Match: XP_022980452.1 (translation machinery-associated protein 7-like [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 25  FANKRTNNGRIEALSS------YPFRLPPDEKVK-ASVDLANIQKKKEEEKALRELRAKA 84
           F + R N   I A+SS       P + P  EK     VD+ANIQKKK+EEKALRELRAKA
Sbjct: 25  FPSTRPNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKALRELRAKA 84

Query: 85  QQKGTFGGSGLKKSGKK 95
           QQKG FGG+GLKKSGKK
Sbjct: 85  QQKGAFGGAGLKKSGKK 101

[Close]

BLAST of Clc09G02250 vs. NCBI nr
Match: KAA0049143.1 (F9L1.21 protein [Cucumis melo var. makuwa] >TYK17418.1 F9L1.21 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 31  NNGRIEALSS------YPFRLPP-DEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTF 90
           N   I A+SS       P + P  D+K    VD+ANIQKKKEEEKAL+ELRAKAQQKGTF
Sbjct: 35  NPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANIQKKKEEEKALKELRAKAQQKGTF 94

Query: 91  GGSGLKKSGKK 95
           GG+GLKKSGKK
Sbjct: 95  GGAGLKKSGKK 105

[Close]

BLAST of Clc09G02250 vs. NCBI nr
Match: XP_022947069.1 (translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947070.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947071.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947072.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947073.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022971147.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971149.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971150.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971151.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971152.1 translation machinery-associated protein 7-like [Cucurbita maxima] >KAG7026977.1 Translation machinery-associated protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 42 PFRLP-PDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          P + P  D+K    VD+AN+QKKK+EEKALRELRAKAQQKGTFGG+GLKKSGKK
Sbjct: 11 PLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKKSGKK 64

[Close]

BLAST of Clc09G02250 vs. NCBI nr
Match: XP_038888592.1 (translation machinery-associated protein 7-like [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 42 PFRLPP-DEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          P + P  D+K    VDLANIQKKK+EEKAL+ELRAKAQQKGTFGG+GLKKSGKK
Sbjct: 11 PLKQPKVDKKDYDEVDLANIQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 64

[Close]

BLAST of Clc09G02250 vs. ExPASy TrEMBL
Match: A0A6J1CWS4 (translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC111015118 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 31 NNGRIEALSS------YPFRLPP-DEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTF 90
          N  +I A+SS       P + P  D+K    VD+ANIQKKK+EEKALRELRAKAQQKGTF
Sbjct: 28 NPSKISAMSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKALRELRAKAQQKGTF 87

Query: 91 GGSGLKKSGKK 95
          GG+GLKKSGKK
Sbjct: 88 GGAGLKKSGKK 98

[Close]

BLAST of Clc09G02250 vs. ExPASy TrEMBL
Match: A0A6J1IRF0 (translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111479817 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 25  FANKRTNNGRIEALSS------YPFRLPPDEKVK-ASVDLANIQKKKEEEKALRELRAKA 84
           F + R N   I A+SS       P + P  EK     VD+ANIQKKK+EEKALRELRAKA
Sbjct: 25  FPSTRPNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKALRELRAKA 84

Query: 85  QQKGTFGGSGLKKSGKK 95
           QQKG FGG+GLKKSGKK
Sbjct: 85  QQKGAFGGAGLKKSGKK 101

[Close]

BLAST of Clc09G02250 vs. ExPASy TrEMBL
Match: A0A5A7TZV6 (F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002810 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 31  NNGRIEALSS------YPFRLPP-DEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTF 90
           N   I A+SS       P + P  D+K    VD+ANIQKKKEEEKAL+ELRAKAQQKGTF
Sbjct: 35  NPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANIQKKKEEEKALKELRAKAQQKGTF 94

Query: 91  GGSGLKKSGKK 95
           GG+GLKKSGKK
Sbjct: 95  GGAGLKKSGKK 105

[Close]

BLAST of Clc09G02250 vs. ExPASy TrEMBL
Match: A0A6J1I7R5 (translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111469908 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 42 PFRLP-PDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          P + P  D+K    VD+AN+QKKK+EEKALRELRAKAQQKGTFGG+GLKKSGKK
Sbjct: 11 PLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKKSGKK 64

[Close]

BLAST of Clc09G02250 vs. ExPASy TrEMBL
Match: A0A6J1G5L5 (translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111451053 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 42 PFRLP-PDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          P + P  D+K    VD+AN+QKKK+EEKALRELRAKAQQKGTFGG+GLKKSGKK
Sbjct: 11 PLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKKSGKK 64

[Close]

BLAST of Clc09G02250 vs. TAIR 10
Match: AT1G15270.1 (Translation machinery associated TMA7 )

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-12
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 42 PFRLP-PDEKVKASVDLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          P + P  D+K     DLANIQKKK+EEKAL+ELRAKA QKG+FGGSGLKKSGKK
Sbjct: 11 PLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64

[Close]

BLAST of Clc09G02250 vs. TAIR 10
Match: AT3G16040.1 (Translation machinery associated TMA7 )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 56 DLANIQKKKEEEKALRELRAKAQQKGTFGGSGLKKSGKK 95
          D+  +QKKK+EEKAL+ELRAKA QKG+FGGSGLKKSGKK
Sbjct: 26 DMELMQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64

The following BLAST results are available for this feature:

BLAST of Clc09G02250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145738.1	8.0e-10	64.79	translation machinery-associated protein 7 [Momordica charantia]	[more]
XP_022980452.1	2.3e-09	61.04	translation machinery-associated protein 7-like [Cucurbita maxima]	[more]
KAA0049143.1	3.1e-09	64.79	F9L1.21 protein [Cucumis melo var. makuwa] >TYK17418.1 F9L1.21 protein [Cucumis ...	[more]
XP_022947069.1	5.2e-09	74.07	translation machinery-associated protein 7-like [Cucurbita moschata] >XP_0229470...	[more]
XP_038888592.1	5.2e-09	75.93	translation machinery-associated protein 7-like [Benincasa hispida]	[more]

BLAST of Clc09G02250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G02250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWS4	3.9e-10	64.79	translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IRF0	1.1e-09	61.04	translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7TZV6	1.5e-09	64.79	F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G0028...	[more]
A0A6J1I7R5	2.5e-09	74.07	translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G5L5	2.5e-09	74.07	translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Clc09G02250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15270.1	5.4e-12	72.22	Translation machinery associated TMA7	[more]
AT3G16040.1	3.3e-09	79.49	Translation machinery associated TMA7	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94
None	No IPR available	PANTHER	PTHR28632:SF8	BNAA06G09940D PROTEIN	coord: 33..94
IPR015157	Translation machinery associated TMA7	PFAM	PF09072	TMA7	coord: 55..94 e-value: 3.1E-12 score: 47.2
IPR015157	Translation machinery associated TMA7	PANTHER	PTHR28632	TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7	coord: 33..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02250.2	Clc09G02250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016301	kinase activity