Clc09G02100 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G02100
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S17, chloroplastic
LocationClcChr09: 1734319 .. 1735315 (-)
RNA-Seq ExpressionClc09G02100
SyntenyClc09G02100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCATCTCCCCCACTCAAAGAACAGAAAGGGAACCCTTCTTCTTATCTTCGTCTTCAATTCGGATAACCCAAAAATCCCTAAAAAAAAGATGTATGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAATAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCACCCTCGCCTTCGCCTTCGCCATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCAATTAGAGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAAACCGTCGCCGTGGAGGTCGTCCGATTAGCGCCTCATCCCAAATACAAGCGTCGCATCAGAATCAAGAAGAAGTACCAAGCCCACGATCCAGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCGGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGCGGTGATGGAGAGGTCGGAATTCCACTGGAGTCTCAGCAAGAACAGGTTTAATCGTATTCGGTTTGTTTGTGGATCTGATTCGTGATTGTTTTGGTGGATGTTATAACGATGAGAATGGACCAAAATGTTCAAATTTTATAATCTTTTTTCGCATTCTTTTCTGAGTTTTTCATCTCTGTCATTGATGCCTTCTGAATTTGGCAACAGAATTGATGATGATGATGATGATGAAGAACTAATGTTGTTGCTGTTCAAATATTCTGGAGTATTGCGTTTGGTTTAGACAATAGTATATGATTTGAATTTCATCATCTTGTTAAAAAGAAAAAATTAATTGAATGGGATAGAATTATGATGAAATTTAAGGTGAAATTTCTATTATGTATATGGCCAACTTCAAGTGTTTTTTAGAACTAAAAAATATGAACACAAATCATGCATTGAATAATTTCAAGCCCT

mRNA sequence

TCCTCATCTCCCCCACTCAAAGAACAGAAAGGGAACCCTTCTTCTTATCTTCGTCTTCAATTCGGATAACCCAAAAATCCCTAAAAAAAAGATGTATGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAATAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCACCCTCGCCTTCGCCTTCGCCATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCAATTAGAGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAAACCGTCGCCGTGGAGGTCGTCCGATTAGCGCCTCATCCCAAATACAAGCGTCGCATCAGAATCAAGAAGAAGTACCAAGCCCACGATCCAGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCGGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGCGGTGATGGAGAGGTCGGAATTCCACTGGAGTCTCAGCAAGAACAGAATTGATGATGATGATGATGATGAAGAACTAATGTTGTTGCTGTTCAAATATTCTGGAGTATTGCGTTTGGTTTAGACAATAGTATATGATTTGAATTTCATCATCTTGTTAAAAAGAAAAAATTAATTGAATGGGATAGAATTATGATGAAATTTAAGGTGAAATTTCTATTATGTATATGGCCAACTTCAAGTGTTTTTTAGAACTAAAAAATATGAACACAAATCATGCATTGAATAATTTCAAGCCCT

Coding sequence (CDS)

ATGTATGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAATAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCACCCTCGCCTTCGCCTTCGCCATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCAATTAGAGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAAACCGTCGCCGTGGAGGTCGTCCGATTAGCGCCTCATCCCAAATACAAGCGTCGCATCAGAATCAAGAAGAAGTACCAAGCCCACGATCCAGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCGGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGCGGTGATGGAGAGGTCGGAATTCCACTGGAGTCTCAGCAAGAACAGAATTGA

Protein sequence

MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQEQN
Homology
[Close]
BLAST of Clc09G02100 vs. NCBI nr
Match: XP_008462167.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 9.9e-72
Identity = 152/165 (92.12%), Postives = 154/165 (93.33%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK  PS SPSP ASQTPNFLPS
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK--PSSSPSPLASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. NCBI nr
Match: XP_004141765.1 (30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypothetical protein Csa_015845 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPP+Q L KLSISSSFLHGSTPLSFLSKPS S SP P  SQTPNFLPS
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFP--SQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPARNSKKKAVEGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. NCBI nr
Match: KAA0059310.1 (30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal protein S17 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.4e-71
Identity = 151/165 (91.52%), Postives = 153/165 (92.73%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK   S SPSP ASQTPNFLPS
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK--ASSSPSPLASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. NCBI nr
Match: XP_038898716.1 (30S ribosomal protein S17, chloroplastic [Benincasa hispida])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M ATLTSSSLLQIPPLQRL KLSIS+SFLHGS+PL F SK      PSPSA QTPNFLPS
Sbjct: 41  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSSPLPFHSK------PSPSAFQTPNFLPS 100

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 101 IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 160

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVP R+SKKKA E GDGE+GIPLESQQEQ
Sbjct: 161 EKCRPISKMKTFLAIPVPERSSKKKAAEDGDGELGIPLESQQEQ 198

[Close]
BLAST of Clc09G02100 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/163 (86.50%), Postives = 148/163 (90.80%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M ATL+ SS LQIPPLQRL  LS+S+SFLHGS PLSFLSK    PSPS SASQTPNFLPS
Sbjct: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSK----PSPSLSASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           I+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVEL
Sbjct: 61  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE 164
           EKCRPISKMKTFLAIPVPARNSK KA E G GE+GIPLESQQ+
Sbjct: 121 EKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQ 159

[Close]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-44
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0 

Query: 19  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDK 78
           L  L +SS F HGSTPLS LSKP+  P+      + P  +P IRAM+++QGRVVCAT+DK
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPNSFPN-----HRMPALVPVIRAMKTMQGRVVCATSDK 69

Query: 79  TVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVP 138
           TVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV 
Sbjct: 70  TVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 129

Query: 139 ARNSKKKAVEGGDGEVGIPLESQQ 163
           AR + +KA  GGD  +G+PLESQQ
Sbjct: 130 AR-AARKAEAGGDELLGLPLESQQ 147

[Close]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-39
Identity = 99/162 (61.11%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 7   SSSLLQIPPLQRLNKLSISSSFLHG-STPLSFL-SKPSPSPSPSPSASQTPNFLPSIRAM 66
           S SLL+ PPL   N     + FLHG +T LS L S  + S S SP +S T    P I+AM
Sbjct: 4   SFSLLK-PPLSSSN----PNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAM 63

Query: 67  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 126
           RS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD+V+L+KCR
Sbjct: 64  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 123

Query: 127 PISKMKTFLAIPVPARNS---KKKAVEGGDGEVGIPLESQQE 164
           PISK KTFLA+    R S   + K ++    E+GIPLESQ E
Sbjct: 124 PISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVE 160

[Close]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 78/129 (60.47%), Postives = 97/129 (75.19%), Query Frame = 0 

Query: 35  LSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYK 94
           L+  S P  SP         P   P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY+
Sbjct: 11  LNRFSNPISSPQTQTQTRSLP--FPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQ 70

Query: 95  RRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEV 154
           +RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SKK    G  GE+
Sbjct: 71  KRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK---AGSSGEL 130

Query: 155 GIPLESQQE 164
           GIPL+SQQE
Sbjct: 131 GIPLQSQQE 134

[Close]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 0 

Query: 38  LSKPSPSPSPSPSASQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 97
           LS P  S SP P    +    P++R  A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 4   LSSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 63

Query: 98  RIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVG 157
           R RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAIP+P R++++K+      ++ 
Sbjct: 64  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS------QLL 123

Query: 158 IPLESQQEQ 165
            PL+S  +Q
Sbjct: 124 PPLQSDDDQ 126

[Close]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.1e-28
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0 

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE 164
            + RPISK K FLA+P+P R++++K+      ++  PL+SQ +
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRKS------QLLPPLQSQSQ 130

[Close]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.8e-72
Identity = 152/165 (92.12%), Postives = 154/165 (93.33%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK  PS SPSP ASQTPNFLPS
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK--PSSSPSPLASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match: A0A0A0K952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPP+Q L KLSISSSFLHGSTPLSFLSKPS S SP P  SQTPNFLPS
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFP--SQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPARNSKKKAVEGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match: A0A5A7UW29 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002170 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.1e-71
Identity = 151/165 (91.52%), Postives = 153/165 (92.73%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK   S SPSP ASQTPNFLPS
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK--ASSSPSPLASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ 165
           EKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Sbjct: 121 EKCRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQ 163

[Close]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match: A0A6J1JVM9 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488732 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.6e-67
Identity = 141/163 (86.50%), Postives = 147/163 (90.18%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M ATL+ SS LQIPPLQRL  LS+S+SFLHGS PLSFLSK    PSPS SASQTPNFLPS
Sbjct: 1   MSATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSK----PSPSLSASQTPNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVEL
Sbjct: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE 164
           EKCRPISKMKTFLAIPVPARNSK KA E G GE+ IPLESQQ+
Sbjct: 121 EKCRPISKMKTFLAIPVPARNSKPKAAEAGVGELEIPLESQQQ 159

[Close]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match: A0A6J1KMI9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494663 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 137/163 (84.05%), Postives = 147/163 (90.18%), Query Frame = 0 

Query: 1   MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPS 60
           M+ATLT SS+LQIPPLQR  KLS+S+SFLHGSTPLSFLSKP+PSP       QT NFLPS
Sbjct: 1   MFATLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSP------PQTLNFLPS 60

Query: 61  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120
           IRAM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL
Sbjct: 61  IRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 120

Query: 121 EKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE 164
           EKCRPISKMKTFLAIPVPARNSK+K  E   G++GIPLESQQ+
Sbjct: 121 EKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

[Close]
BLAST of Clc09G02100 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-45
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0 

Query: 19  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDK 78
           L  L +SS F HGSTPLS LSKP+  P+      + P  +P IRAM+++QGRVVCAT+DK
Sbjct: 10  LQALKLSSPFAHGSTPLSSLSKPNSFPN-----HRMPALVPVIRAMKTMQGRVVCATSDK 69

Query: 79  TVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVP 138
           TVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV 
Sbjct: 70  TVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 129

Query: 139 ARNSKKKAVEGGDGEVGIPLESQQ 163
           AR + +KA  GGD  +G+PLESQQ
Sbjct: 130 AR-AARKAEAGGDELLGLPLESQQ 147

The following BLAST results are available for this feature:
BLAST of Clc09G02100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462167.19.9e-7292.12PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo][more]
XP_004141765.12.9e-7191.5230S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypotheti... [more]
KAA0059310.18.4e-7191.5230S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal p... [more]
XP_038898716.11.2e-6989.0230S ribosomal protein S17, chloroplastic [Benincasa hispida][more]
XP_023548191.11.5e-6786.5030S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Clc09G02100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P161802.4e-4467.3630S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821373.0e-3961.1130S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P... [more]
P170922.7e-3560.4730S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=... [more]
Q9TJN66.3e-2958.1430S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1[more]
Q9ZST14.1e-2863.1130S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
BLAST of Clc09G02100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CGC84.8e-7292.1230S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591... [more]
A0A0A0K9521.4e-7191.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1[more]
A0A5A7UW294.1e-7191.5230S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1JVM93.6e-6786.5030S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1KMI91.0e-6684.0530S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
BLAST of Clc09G02100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79850.11.7e-4567.36ribosomal protein S17 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 83..106
score: 34.25
coord: 115..125
score: 52.55
coord: 125..132
score: 52.75
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 69..132
e-value: 6.3E-24
score: 83.9
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 36..164
NoneNo IPR availableGENE3D2.40.50.140coord: 63..152
e-value: 4.9E-25
score: 89.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..165
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 36..164
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 115..127
IPR01998430S ribosomal protein S17HAMAPMF_01345_BRibosomal_S17_Bcoord: 64..139
score: 17.915262
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 64..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G02100.1Clc09G02100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome