Clc09G02030 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02030
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein THYLAKOID ASSEMBLY 8, chloroplastic
Location	ClcChr09: 1661236 .. 1662264 (+)
RNA-Seq Expression	Clc09G02030
Synteny	Clc09G02030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAATAGTAGGTGAATGAGCCTATTTTTTTCCCGACTAACGGCCGAACAGTACAAGTCAAGTAAACAAGTTACAAGGCCCAACATTACCCAACCGATGGCCCAATAGAAAAACACATCAATGGGCCAAGCCCAATTTCTGATAACATTCGATTTCCCCCAAGGGTACTACATTCATTGCGAAATCCCCAATCTGCACTCCGCCATGGCTCTGTCTCTTCACGCCACATTTCTCAAATCCCAAATCTCGGTTCCGATCCCCGTCTCCGCCGCGGCTGCCGTCACCGTTTCCCTTCCGGTACGATGCGGCCCTCGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTGAAACGGGCCGAGAGATCCGATCCAACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGAGCGGTGCGTCCTCGCCTTGGAGGTTTTCGCAGTAATCAGATCGGAGTACGGCGCCGATTTGGGGCTGTACGCGGAGGTGGCAGTGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGACGGCGGAGACGGGGTGATTCAGTGGGATGAGAAGGGTTTGATTAAGTTGATGAAGGCGGTGATTAGTGGGGATAGAAGGGAATCAACGGTCAGGATTTATCGGATGATGAGAAGGAACGGTTGGGGGTCCACCATTAAAGCTGATGATTATATGGTTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATGGAGTTGGCCGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGCAGTTTTTGAAAATTTCTGAAGTTGGTAAATTGACACAAAATGTATTTGTTTTATATATTTATATTCTATATTTTTGTTGTATTGTAAGTTGTAACATTATATTACCATTTACTTTGGATAATTAACTAATTTGCCAAAGGTTGATGTAA

mRNA sequence

GTGAAATAGTAGGTGAATGAGCCTATTTTTTTCCCGACTAACGGCCGAACAGTACAAGTCAAGTAAACAAGTTACAAGGCCCAACATTACCCAACCGATGGCCCAATAGAAAAACACATCAATGGGCCAAGCCCAATTTCTGATAACATTCGATTTCCCCCAAGGGTACTACATTCATTGCGAAATCCCCAATCTGCACTCCGCCATGGCTCTGTCTCTTCACGCCACATTTCTCAAATCCCAAATCTCGGTTCCGATCCCCGTCTCCGCCGCGGCTGCCGTCACCGTTTCCCTTCCGGTACGATGCGGCCCTCGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTGAAACGGGCCGAGAGATCCGATCCAACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGAGCGGTGCGTCCTCGCCTTGGAGGTTTTCGCAGTAATCAGATCGGAGTACGGCGCCGATTTGGGGCTGTACGCGGAGGTGGCAGTGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGACGGCGGAGACGGGGTGATTCAGTGGGATGAGAAGGGTTTGATTAAGTTGATGAAGGCGGTGATTAGTGGGGATAGAAGGGAATCAACGGTCAGGATTTATCGGATGATGAGAAGGAACGGTTGGGGGTCCACCATTAAAGCTGATGATTATATGGTTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATGGAGTTGGCCGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGCAGTTTTTGAAAATTTCTGAAGTTGGTAAATTGACACAAAATGTATTTGTTTTATATATTTATATTCTATATTTTTGTTGTATTGTAAGTTGTAACATTATATTACCATTTACTTTGGATAATTAACTAATTTGCCAAAGGTTGATGTAA

Coding sequence (CDS)

ATGGGCCAAGCCCAATTTCTGATAACATTCGATTTCCCCCAAGGGTACTACATTCATTGCGAAATCCCCAATCTGCACTCCGCCATGGCTCTGTCTCTTCACGCCACATTTCTCAAATCCCAAATCTCGGTTCCGATCCCCGTCTCCGCCGCGGCTGCCGTCACCGTTTCCCTTCCGGTACGATGCGGCCCTCGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCACCGAAGCAATCCAAGCCATTCAATCTCTGAAACGGGCCGAGAGATCCGATCCAACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGAGCGGTGCGTCCTCGCCTTGGAGGTTTTCGCAGTAATCAGATCGGAGTACGGCGCCGATTTGGGGCTGTACGCGGAGGTGGCAGTGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTGGACGGCGGAGACGGGGTGATTCAGTGGGATGAGAAGGGTTTGATTAAGTTGATGAAGGCGGTGATTAGTGGGGATAGAAGGGAATCAACGGTCAGGATTTATCGGATGATGAGAAGGAACGGTTGGGGGTCCACCATTAAAGCTGATGATTATATGGTTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATGGAGTTGGCCGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGCAGTTTTTGA

Protein sequence

MGQAQFLITFDFPQGYYIHCEIPNLHSAMALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF

Homology

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BLAST of Clc09G02030 vs. NCBI nr
Match: XP_038898717.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-107
Identity = 208/226 (92.04%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA S+H+TFLKSQIS+PIPVSAAAAV VSLPVRCGPRDNRGPLVKGRTLS EAIQAIQSL
Sbjct: 1   MASSIHSTFLKSQISIPIPVSAAAAVAVSLPVRCGPRDNRGPLVKGRTLSIEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAERSDPTKLQQVLSTTLSRLLKADLVA+LKELLRQ+RC LALEVFAVIRSEYGADLG+
Sbjct: 61  KRAERSDPTKLQQVLSTTLSRLLKADLVASLKELLRQDRCALALEVFAVIRSEYGADLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGAAEEIDRLVCDLDGGD +IQWD+KGLIKL+KAVISGDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAAEEIDRLVCDLDGGDVLIQWDDKGLIKLIKAVISGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGS 255
           MRRNGWGSTIKADDY+VRVLSKGLRR GEMELADEINREFQDLVG+
Sbjct: 181 MRRNGWGSTIKADDYLVRVLSKGLRRFGEMELADEINREFQDLVGN 226

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BLAST of Clc09G02030 vs. NCBI nr
Match: XP_008462172.1 (PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo])

HSP 1 Score: 398.7 bits (1023), Expect = 3.9e-107
Identity = 215/254 (84.65%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 10  FDFP----QGYYIHCE--IPNLHSAMALSLHATFLKSQISVPIPVS-AAAAVTVSLPVRC 69
           FDFP    +GYY HCE   PNLH+AMA SLH+TFLKSQIS+PIP S A AAV VS  VRC
Sbjct: 3   FDFPPNLSKGYYSHCEKKKPNLHTAMASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRC 62

Query: 70  GPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKEL 129
           GPRDNRGPLVKGRTLS EAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVA LKEL
Sbjct: 63  GPRDNRGPLVKGRTLSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKEL 122

Query: 130 LRQERCVLALEVFAVIRSEYGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQW- 189
           LRQERC LALEVFAVIRSEY A+LGLYAEVA ALSRNGAAEEIDRLVCDLDG DGVI+W 
Sbjct: 123 LRQERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWG 182

Query: 190 -DEKGLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMEL 249
            D+KGLIKL+KAVISG+RRESTVRIYRMMRRNGWGS IK DDYM++V+SKGLRR+GE+EL
Sbjct: 183 DDDKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIEL 242

Query: 250 ADEINREFQDLVGS 255
           ADEINREFQDLVGS
Sbjct: 243 ADEINREFQDLVGS 256

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BLAST of Clc09G02030 vs. NCBI nr
Match: XP_022954347.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 3.2e-101
Identity = 196/227 (86.34%), Postives = 212/227 (93.39%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA SLH+TFLKSQI +PIP+SAAA V VSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISAAATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RC LALEVFAV+RSEYGADLG+
Sbjct: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGA EEIDRLVCDL+  D VIQ D+KGLIKL+KAVI GDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           M+R+GWGSTIKADDY VRVLSKGLRRLGEME+ADE+N +FQDLVGSF
Sbjct: 181 MKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

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BLAST of Clc09G02030 vs. NCBI nr
Match: XP_022992386.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 378.6 bits (971), Expect = 4.1e-101
Identity = 196/227 (86.34%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA SLH+TFLKSQI +PIP+SA A V VSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RC LALEVFAV+RSEYG DLG+
Sbjct: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGA EEIDRLVCDL+  D VIQ D+KGLIKL+KAVI GDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           M+R+GWGSTIKADDYMVRVLSKGLRRLGEME+ADEIN +FQDLVGSF
Sbjct: 181 MKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 227

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BLAST of Clc09G02030 vs. NCBI nr
Match: XP_023522652.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548438.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548440.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 7.1e-101
Identity = 195/227 (85.90%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA SLH+TFLKSQI +PIP+SA A V VSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RC LALEVFAV+RSEYGADLG+
Sbjct: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGAAEEIDRLVCDL+  D  IQ D+KGLIKL+KAVI GDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           M+R+GWGSTIKADDY VRVLSKGLRRLGEME+ADE+N +FQDLVGSF
Sbjct: 181 MKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

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BLAST of Clc09G02030 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.7e-45
Identity = 112/222 (50.45%), Postives = 154/222 (69.37%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MALSL  T   S +S    +S        + +RCGPRDNRGPL+KGR LSTEAIQ+IQSL
Sbjct: 1   MALSLSQTRPPS-LSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSL 60

Query: 89  KRAERSDPTKLQQVLSTT---LSRLLKADLVAALKELLRQERCVLALEVFAVIRSEY-GA 148
           KRA R+  +     LS T   L RL+K+DL++ L+ELLRQ+ C LA+ V + +R+EY   
Sbjct: 61  KRAHRTGVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPL 120

Query: 149 DLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVR 208
           DL LYA++  AL+RN   +EIDRL+ ++DG D   + D+K L KL++AV+  +RRES VR
Sbjct: 121 DLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ--RSDDKALAKLIRAVVGAERRESVVR 180

Query: 209 IYRMMRRNGWGS-TIKADDYMVRVLSKGLRRLGEMELADEIN 246
           +Y +MR +GWGS + +AD+Y+  VLSKGL RLGE +LA +++
Sbjct: 181 VYTLMRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVS 214

[Close]

BLAST of Clc09G02030 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-07
Identity = 53/187 (28.34%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 68  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQE 127
           RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL RQE
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 128 RCVLALEVFAVIRSE--YGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEK 187
              LA+++F VI+ +  Y  D+ +Y ++ V+L+++   +E   L   +   +  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 188 GLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEI 247
              ++++  +        + +Y  M +    S    ++   RVL KGL  L    L +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 248 NREFQDL 252
            ++F++L
Sbjct: 243 KKDFEEL 240

[Close]

BLAST of Clc09G02030 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-07
Identity = 48/177 (27.12%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 77  LSTEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFA 136
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 137 VIRSE--YGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVI 196
           V+R E  Y  D+  Y ++ + L+RN   +E  ++  DL   +  + +D+     L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 197 SGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDL 252
             +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

[Close]

BLAST of Clc09G02030 vs. ExPASy TrEMBL
Match: A0A1S3CGD3 (uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.9e-107
Identity = 215/254 (84.65%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 10  FDFP----QGYYIHCE--IPNLHSAMALSLHATFLKSQISVPIPVS-AAAAVTVSLPVRC 69
           FDFP    +GYY HCE   PNLH+AMA SLH+TFLKSQIS+PIP S A AAV VS  VRC
Sbjct: 3   FDFPPNLSKGYYSHCEKKKPNLHTAMASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRC 62

Query: 70  GPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKEL 129
           GPRDNRGPLVKGRTLS EAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVA LKEL
Sbjct: 63  GPRDNRGPLVKGRTLSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKEL 122

Query: 130 LRQERCVLALEVFAVIRSEYGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQW- 189
           LRQERC LALEVFAVIRSEY A+LGLYAEVA ALSRNGAAEEIDRLVCDLDG DGVI+W 
Sbjct: 123 LRQERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWG 182

Query: 190 -DEKGLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMEL 249
            D+KGLIKL+KAVISG+RRESTVRIYRMMRRNGWGS IK DDYM++V+SKGLRR+GE+EL
Sbjct: 183 DDDKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIEL 242

Query: 250 ADEINREFQDLVGS 255
           ADEINREFQDLVGS
Sbjct: 243 ADEINREFQDLVGS 256

[Close]

BLAST of Clc09G02030 vs. ExPASy TrEMBL
Match: A0A6J1GQS0 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456620 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.5e-101
Identity = 196/227 (86.34%), Postives = 212/227 (93.39%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA SLH+TFLKSQI +PIP+SAAA V VSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISAAATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RC LALEVFAV+RSEYGADLG+
Sbjct: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGA EEIDRLVCDL+  D VIQ D+KGLIKL+KAVI GDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           M+R+GWGSTIKADDY VRVLSKGLRRLGEME+ADE+N +FQDLVGSF
Sbjct: 181 MKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of Clc09G02030 vs. ExPASy TrEMBL
Match: A0A6J1JTE8 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488709 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.0e-101
Identity = 196/227 (86.34%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MA SLH+TFLKSQI +PIP+SA A V VSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 60

Query: 89  KRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLGL 148
           KRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RC LALEVFAV+RSEYG DLG+
Sbjct: 61  KRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLGM 120

Query: 149 YAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVRIYRM 208
           YAEVA ALSRNGA EEIDRLVCDL+  D VIQ D+KGLIKL+KAVI GDRRESTVRIYRM
Sbjct: 121 YAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYRM 180

Query: 209 MRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           M+R+GWGSTIKADDYMVRVLSKGLRRLGEME+ADEIN +FQDLVGSF
Sbjct: 181 MKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 227

[Close]

BLAST of Clc09G02030 vs. ExPASy TrEMBL
Match: A0A0A0K6N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 3.2e-99
Identity = 199/230 (86.52%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAA-VTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 88
           MA SLH+TFLKSQIS+PIP S A + V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 89  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLG 148
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERC LALEVFAVI+SEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 149 LYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQW--DEKGLIKLMKAVISGDRRESTVRI 208
           LYAEVA ALSRNGAAEEIDRLV DLDGGDGVI+W  D+KGLIKL+KAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 209 YRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGSF 256
           YRMMRR GWGS IKADDYM++VLSKGLRRLGE+ELADEINREF+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]

BLAST of Clc09G02030 vs. ExPASy TrEMBL
Match: A0A5A7V0E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002110 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.2e-99
Identity = 199/229 (86.90%), Postives = 211/229 (92.14%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVS-AAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 88
           MA SL +TFLKSQIS+PIP S A AAV VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 89  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFAVIRSEYGADLG 148
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERC LALEVFAVIRSEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 149 LYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQW--DEKGLIKLMKAVISGDRRESTVRI 208
           LYAEVA ALSRNGAAEEIDRLVCDLDG DGVI+W  D+KGLIKL+KAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 209 YRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDLVGS 255
           YRMMRRNGWGS IK DDYM++V+SKGLRR+GE+ELADEINREFQDLVGS
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 229

[Close]

BLAST of Clc09G02030 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-46
Identity = 112/222 (50.45%), Postives = 154/222 (69.37%), Query Frame = 0


Query: 29  MALSLHATFLKSQISVPIPVSAAAAVTVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQSL 88
           MALSL  T   S +S    +S        + +RCGPRDNRGPL+KGR LSTEAIQ+IQSL
Sbjct: 1   MALSLSQTRPPS-LSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSL 60

Query: 89  KRAERSDPTKLQQVLSTT---LSRLLKADLVAALKELLRQERCVLALEVFAVIRSEY-GA 148
           KRA R+  +     LS T   L RL+K+DL++ L+ELLRQ+ C LA+ V + +R+EY   
Sbjct: 61  KRAHRTGVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPL 120

Query: 149 DLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVISGDRRESTVR 208
           DL LYA++  AL+RN   +EIDRL+ ++DG D   + D+K L KL++AV+  +RRES VR
Sbjct: 121 DLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ--RSDDKALAKLIRAVVGAERRESVVR 180

Query: 209 IYRMMRRNGWGS-TIKADDYMVRVLSKGLRRLGEMELADEIN 246
           +Y +MR +GWGS + +AD+Y+  VLSKGL RLGE +LA +++
Sbjct: 181 VYTLMRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVS 214

[Close]

BLAST of Clc09G02030 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-16
Identity = 67/206 (32.52%), Postives = 101/206 (49.03%), Query Frame = 0


Query: 67  NRGPLVKGRTLSTEAIQAIQSLKRAE--------------RSDPTKLQQVLSTTLSRLLK 126
           NR PL +GR LS EAIQA+Q+LKRA                S    L +V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 127 ADLVAALKELLRQERCVLALEVFAVIRSE--YGADLGLYAEVAVALSRNGAAEEIDRLVC 186
            D+VA L+ELLRQ  C LAL+VF  IR E  Y   + +Y ++   ++ N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 187 DLDGGDGV---IQWDEKGLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRV 246
            +    G+   I+W       L+  +++    +  +  Y  M+  G+    + D    RV
Sbjct: 615 AMKSEKGLMAEIEW----FNTLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFRV 674

Query: 247 LSKGLRRLGEMELADEINREFQDLVG 254
           L  GL   GEM L+  + ++  +  G
Sbjct: 675 LVLGLESNGEMGLSAIVRQDAHEYYG 692

[Close]

BLAST of Clc09G02030 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-08
Identity = 53/187 (28.34%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 68  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQE 127
           RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL RQE
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 128 RCVLALEVFAVIRSE--YGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEK 187
              LA+++F VI+ +  Y  D+ +Y ++ V+L+++   +E   L   +   +  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN--LFPDSQ 182

Query: 188 GLIKLMKAVISGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEI 247
              ++++  +        + +Y  M +    S    ++   RVL KGL  L    L +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 248 NREFQDL 252
            ++F++L
Sbjct: 243 KKDFEEL 240

[Close]

BLAST of Clc09G02030 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-08
Identity = 48/177 (27.12%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 77  LSTEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCVLALEVFA 136
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 137 VIRSE--YGADLGLYAEVAVALSRNGAAEEIDRLVCDLDGGDGVIQWDEKGLIKLMKAVI 196
           V+R E  Y  D+  Y ++ + L+RN   +E  ++  DL   +  + +D+     L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEE--VLFDQHTFGDLVRGFL 120

Query: 197 SGDRRESTVRIYRMMRRNGWGSTIKADDYMVRVLSKGLRRLGEMELADEINREFQDL 252
             +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

The following BLAST results are available for this feature:

BLAST of Clc09G02030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898717.1	1.3e-107	92.04	protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida]	[more]
XP_008462172.1	3.9e-107	84.65	PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo]	[more]
XP_022954347.1	3.2e-101	86.34	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata]	[more]
XP_022992386.1	4.1e-101	86.34	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima]	[more]
XP_023522652.1	7.1e-101	85.90	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of Clc09G02030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	5.7e-45	50.45	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	2.1e-07	28.34	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	2.8e-07	27.12	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]

BLAST of Clc09G02030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGD3	1.9e-107	84.65	uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=...	[more]
A0A6J1GQS0	1.5e-101	86.34	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JTE8	2.0e-101	86.34	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0K6N6	3.2e-99	86.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1	[more]
A0A5A7V0E2	4.2e-99	86.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc09G02030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27750.1	4.1e-46	50.45	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G09320.1	3.3e-16	32.52	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	1.5e-08	28.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	2.0e-08	27.12	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 76..251 e-value: 3.7E-30 score: 106.9
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 32..252
None	No IPR available	PANTHER	PTHR47594:SF3	PROTEIN THYLAKOID ASSEMBLY 8, CHLOROPLASTIC	coord: 32..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02030.1	Clc09G02030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding