Clc09G02010 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02010
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein UXT homolog
Location	ClcChr09: 1642859 .. 1646406 (+)
RNA-Seq Expression	Clc09G02010
Synteny	Clc09G02010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCTTGCAACATTGAAATTTACAATTTTAAAAATGAAGTTACAACTTAGAAGGAATTTAAATTTCAGCCAACTTAAATAGCCTTAGCCTTAACTTTATTTACAAATATTTGACTCACAAGTAAAAAGCCCTAGAAACCAATTCCGCCTCCATTTTCAACACTGCCGCTGCGGCTTAACGTTGTTGCCGTTAGCTCCACTCCCCTCTCCCGCTCACCTCGATGGCTCCGTTCCTCCCATTCGCCGACGCCGTTGCGCTCCATCTCTAACAAATTCCCTACCAACCCAACTGAATTGGTAAATAGCCCATAAATTGTTGATATTGTCCTCCATGTAGTTTGATAAATTCTTTGGAATTTTAACATCAATTTCCCGTAACGAAAATGTCGACAATTGTGTATGCAGGTGATAGAAGTTTTGCCACTTTGTTGTTCATAACTATTTTAGAACACCCACAAGGCTGTCACGTTCAGTTGTTATTTATTGATCATGGATGTAGGAATTGATAACTTTCGGCATGAGAAAGTTCAAAGGTTTGAGGAATTTGTTGACCGTCGCTTGAAACCTGATTTGGTGCATGCAATCGCTGAAAGGTATGCATTTGTTTTAGTTTCTCAACTTCGTGCATTTTGAAGGATCCCAATGAAGCATAGTCTATCAAGCGATATCTATAATCTTGTTCGCCCGTCTTAATTGATATTACAAGTTAAACTGATGATGTGTGGCCTAACTTATATCTGTTTTCATTGTCTTCCATAGAATGGAATTAAATATCAACATTGCCCCAGATTTGATAATTGTTGGATTTTGGTAATTAATTAAAAAATGAAGTTATGTGGTGGTGGTTGGTGTCTAATGATCTTAATCACATGCTTTGAAGGATTAACTTGCTTGGGAATCTTGGATGACCGTGATAGGCCATTGGTGATTAACGTATGTCGTAGTGAGAGAATTATACAGGAGAGGAATGATTTCTGAGGTATCTTGTAAGTCGGTTTGGCCTATATAGTGGTCATAGTGTCAGTGAATTTGTGACGAGATATATATATATCATGTGCATCGTTCTGGTTTAGGGAGGTATCTTTTTTATTGCCTTGGACCTTGGGATGGATGAGAGCTCTCAAATTCTCCTTTAACTCGGATATCATATGAATTGATTTCTGTGTCCATGCAAAGATGCATTTCTGTTCTTTCCTTTGGCTTTGAGAGAGATGGGAGCTCTCAGAAATCTCCATTGACTAGTATTTCTTGGATATCAATAGTTGGTTTCTATAAATCCAGAAGGTCGTCTTTTGATCTTGTGTTTATTTTGTTGGTACATAGGATAACAGGCATCTTGAGAATTCAAGATGTCAATGGAAGAGAAGAGTATCATATTAATTTTGTGAAACATTTTTTGGTATTAAATTTCCGATTTCTTTTAACTTATGTGGTTTATCCATGGACATTAATGTGGACTTAGTGTTCTGTTGGTTGAATTTCTTTGTTACTTGGTTTTTAGACAATTTTCAGATTTAGTTTTGATGAAATTTAATTTCATCGTTGGGGGGAGGAAATGAAGGAAAAAGATTGTTTGTGAGCATTTGTTGAAAACTCGAGAGATGTAAAATTCTTGTAACGGTTTTTTCTATATCGTTTGTTGTTTGGCAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTGTATCCTTTTTAATTCATTTGACTCCTCAGATTTATGGCTTCACTTAATTCCTAATTATTCCGTCATACTTCTTTCGCTTGTGCTATGTTGCATTCTCAATGGTATTTATGATTTTGACACTTAACACTTTTATACCATTAGTTCGGACCTTCGTCGGAACATTGAGAATTTGGAGAAAAATTGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGATGTGTAAGTTTCTCTTACCAATCTAGATAATGAATCTGGTTGCCTCTTTTCATTTTCTTTTTTAGTTCTTTTATTATCTAGCAGTGTTTAGACCACCTTGTGTGCACCTCAACTAATTTTACAAAACAACTACTCGACCTTGTAATATTTGGTTGTTAGAAAACTTGAAGGATTTAATATTCTAGTAGGTGGCCACTATGGAATTTGGATCATCTCTATGTCATGTTGCTTTATCGCTAGCCCCATTGAATATTAGGTCAACCTATGGTGGTTAGATTGGATATCAAGCTATTTGAGAGTTATTATACTTGTCTTATTTTTCATCTGTCAAAACAATCAAAGGGAAGAAAAGTATAGTAACTCCCAATTAACTTTAATTTTTAGGTACCAGGACCCTCCCTCCTCTCTCTTGAACGCACTCAAGCCTAAACAACCACAGTATTACCTGCTTACAAGTTGCATTTGTTTCCATTTCCGATAAATAATCAGTTCCTACTCAGAAATTTTTTTAGCTACAAGGGTGATCCATGGACCCAATCCAGTGAATGGTTGGATGGGCCGGCCTCTGAGCCATGGGCTCAGTGATGAGGCTGACTCTCTTACTCCCACTTAATTTACCTTTATCCTGCAAATTCAGAGCTTCTCATCTCTACTTGTACAGGCCAGATACACGAAGTATATTTGTAGACGTTGGGCTTGGTTTTCATGTCGAGTTCACATGGTCAGAAGCTTTAAAATTCATTTCTCTCAAAGAAGAAAGGTTAGCCAGGTAAATGTTTAAGTATCGCGGGTGTTGTTTAGATTAGTGCTTATACTAAACCTGTGACTATTAGGATCTTATGTTCCTTTAAGGTTTCAGATTTTCATTTATTGAAGAGCCTGCATTTGTTTTTGTTGTAACCACGCAGACAGATAGAAGAGTACACTCAATTAATTGCATCAATTAAAGCGCAGATCAAGTTGGTATGTATTTCATAACTAACATTTTTCTGTGATCTCTTTGTTTCTTATTTACAAGATTCAATTTAATTATTGTACCTCAATTTTCGTTGATCTTGACACGCCGCCCTAAGTTCAGTGGTGAAAATGGAACTTTTTTCCTTAAAAAAATCCCTATTAAGTATACAAATATTGACTCTTCTGGGATTCTTAAACTTTCATTTATATCGCTCTAAAGCTACTTTTCTATATTCTTCATTTGTAAGACAAGTGGGATTGGTGAGAGGCGAACAATACGAGTATTTTTAACATTTTTGATTTGTAGGTTTGTGAAGGGATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTCGAAGGACGTGTATTTTGAGTTTCGTTCCGGATGGTTCCTGCTTTCCTGGGGATGAAGATGGTCCTGAATCAGTGTATAAAATCCTAAATTTTTATGCTCTTTATTGACTTGTTCATCTTTTAGAACTTTATGAAAAGTACCACCTTACTTTTTGTCATTGCATTGATTATTTATGCTTCTCAAAATCTAGTGTTTCTTCTGTGAGTCAATGCCCCCATCACTTAATGGTTGGTAATTCACGCCAAATTGAGTGGTAATTAGTATGATCTTCAATTTTAGAGGTAGCAGGTTCAATCTTCCATCCCATTATACT

mRNA sequence

TAGCTTGCAACATTGAAATTTACAATTTTAAAAATGAAGTTACAACTTAGAAGGAATTTAAATTTCAGCCAACTTAAATAGCCTTAGCCTTAACTTTATTTACAAATATTTGACTCACAAGTAAAAAGCCCTAGAAACCAATTCCGCCTCCATTTTCAACACTGCCGCTGCGGCTTAACGTTGTTGCCGTTAGCTCCACTCCCCTCTCCCGCTCACCTCGATGGCTCCGTTCCTCCCATTCGCCGACGCCGTTGCGCTCCATCTCTAACAAATTCCCTACCAACCCAACTGAATTGGTGATAGAAGTTTTGCCACTTTGTTGTTCATAACTATTTTAGAACACCCACAAGGCTGTCACGTTCAGTTGTTATTTATTGATCATGGATGTAGGAATTGATAACTTTCGGCATGAGAAAGTTCAAAGGTTTGAGGAATTTGTTGACCGTCGCTTGAAACCTGATTTGGTGCATGCAATCGCTGAAAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTTTCGGACCTTCGTCGGAACATTGAGAATTTGGAGAAAAATTGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGATGTGCCAGATACACGAAGTATATTTGTAGACGTTGGGCTTGGTTTTCATGTCGAGTTCACATGGTCAGAAGCTTTAAAATTCATTTCTCTCAAAGAAGAAAGGTTAGCCAGACAGATAGAAGAGTACACTCAATTAATTGCATCAATTAAAGCGCAGATCAAGTTGGTTTGTGAAGGGATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTCGAAGGACGTGTATTTTGAGTTTCGTTCCGGATGGTTCCTGCTTTCCTGGGGATGAAGATGGTCCTGAATCAGTGTATAAAATCCTAAATTTTTATGCTCTTTATTGACTTGTTCATCTTTTAGAACTTTATGAAAAGTACCACCTTACTTTTTGTCATTGCATTGATTATTTATGCTTCTCAAAATCTAGTGTTTCTTCTGTGAGTCAATGCCCCCATCACTTAATGGTTGGTAATTCACGCCAAATTGAGTGGTAATTAGTATGATCTTCAATTTTAGAGGTAGCAGGTTCAATCTTCCATCCCATTATACT

Coding sequence (CDS)

ATGGATGTAGGAATTGATAACTTTCGGCATGAGAAAGTTCAAAGGTTTGAGGAATTTGTTGACCGTCGCTTGAAACCTGATTTGGTGCATGCAATCGCTGAAAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTTTCGGACCTTCGTCGGAACATTGAGAATTTGGAGAAAAATTGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGATGTGCCAGATACACGAAGTATATTTGTAGACGTTGGGCTTGGTTTTCATGTCGAGTTCACATGGTCAGAAGCTTTAAAATTCATTTCTCTCAAAGAAGAAAGGTTAGCCAGACAGATAGAAGAGTACACTCAATTAATTGCATCAATTAAAGCGCAGATCAAGTTGGTTTGTGAAGGGATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTCGAAGGACGTGTATTTTGA

Protein sequence

MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF

Homology

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BLAST of Clc09G02010 vs. NCBI nr
Match: XP_008462175.1 (PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like protein [Cucumis melo var. makuwa] >TYK04010.1 protein UXT-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDVG D+FR+EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIEEY
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

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BLAST of Clc09G02010 vs. NCBI nr
Match: XP_004141760.1 (protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_016378 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDV  DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TN+RTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIEEY
Sbjct: 61  TNVRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERTVE RVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

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BLAST of Clc09G02010 vs. NCBI nr
Match: XP_022159095.1 (protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           M+VG DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLR+NIENLEKN I
Sbjct: 1   MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEAL FISL+EERLARQIEEY
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALNFISLREERLARQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAER+VEG VF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERSVEGHVF 155

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BLAST of Clc09G02010 vs. NCBI nr
Match: XP_038897562.1 (protein UXT homolog [Benincasa hispida])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 147/155 (94.84%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MD GIDNFR+EKV+RFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDAGIDNFRNEKVKRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLR LVNLGSEVY QGDVPDTRSIFVDVGLGFHVEFTWSEALKF+SLKEERLARQIEEY
Sbjct: 61  TNLRMLVNLGSEVYGQGDVPDTRSIFVDVGLGFHVEFTWSEALKFLSLKEERLARQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERT+EGRVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTIEGRVF 155

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BLAST of Clc09G02010 vs. NCBI nr
Match: XP_022992427.1 (protein UXT homolog [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDVGIDNFR+EKVQRFEEFVDRRLKPDLVHAI+ERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAISERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNL TLVNLGSEVYVQG+V DTR IFVDVGLGFHVEFTWSEALKFISLKEERLARQ EEY
Sbjct: 61  TNLTTLVNLGSEVYVQGNVADTRRIFVDVGLGFHVEFTWSEALKFISLKEERLARQTEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           T LIASIKAQIKLVCEGIRELLQLPAE+TVEGRVF
Sbjct: 121 THLIASIKAQIKLVCEGIRELLQLPAEKTVEGRVF 155

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BLAST of Clc09G02010 vs. ExPASy Swiss-Prot
Match: Q54ND3 (Protein UXT homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0285389 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-23
Identity = 56/136 (41.18%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 9   RHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVN 68
           R + ++ +E F++  L  DL  +I +R+KV E  + + +L+ NIE L +N + +++T++N
Sbjct: 25  RLDSIKYYETFINETLNVDLNKSIEDREKVLENLENYLELKSNIELLIENKMDSMKTMIN 84

Query: 69  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIK 128
           LGSE YV+  V DT  I+VD+GLG HV++T  EA+KFI+ KE  L + +E  T+ I  IK
Sbjct: 85  LGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFLNKTVENQTKKINQIK 144

Query: 129 AQIKLVCEGIRELLQL 145
            +I L+  G++EL  L
Sbjct: 145 TKIDLIQNGLKELKHL 160

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BLAST of Clc09G02010 vs. ExPASy Swiss-Prot
Match: A7T0W1 (Protein UXT homolog OS=Nematostella vectensis OX=45351 GN=v1g140887 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI--TNLRTLVN 70
           EK++++EEF+D+RL  DL      +D++  +   ++ L+ +IE ++K  +   +LR+ V+
Sbjct: 13  EKIRKYEEFLDQRLAKDLEAVFKSQDEIVAKITEYTQLKSSIEQIQKTDLKGKDLRSRVD 72

Query: 71  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIK 130
           LG   + Q  VPD   IF+ VG GF VEFT SEAL FI  K   L   +++  +  A IK
Sbjct: 73  LGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEALNFIEKKLAHLQHSVDKLGKDAAKIK 132

Query: 131 AQIKLVCEGIREL 142
           A +KLV  G++EL
Sbjct: 133 AHMKLVLGGLQEL 145

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BLAST of Clc09G02010 vs. ExPASy Swiss-Prot
Match: Q9WTZ0 (Protein UXT OS=Mus musculus OX=10090 GN=Uxt PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ  V+  LR  IE L++   + L   V+LG
Sbjct: 15  EKVLRYETFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    +  T+   +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAH 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMMLEGLREL 145

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BLAST of Clc09G02010 vs. ExPASy Swiss-Prot
Match: Q63ZY7 (Protein UXT OS=Rattus norvegicus OX=10116 GN=Uxt PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ  V+  LR  IE L++   + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    +  T+   +IKA 
Sbjct: 75  CNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAN 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMMLEGLREL 145

[Close]

BLAST of Clc09G02010 vs. ExPASy Swiss-Prot
Match: Q32P97 (Protein UXT OS=Bos taurus OX=9913 GN=UXT PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ   +  LR  IE L++   + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQEANHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    +  T+   +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDNLTKDSMNIKAH 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMLLEGLREL 145

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BLAST of Clc09G02010 vs. ExPASy TrEMBL
Match: A0A5D3BXW7 (Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002080 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.8e-76
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDVG D+FR+EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIEEY
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

[Close]

BLAST of Clc09G02010 vs. ExPASy TrEMBL
Match: A0A1S3CHV4 (protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.8e-76
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDVG D+FR+EKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIEEY
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

[Close]

BLAST of Clc09G02010 vs. ExPASy TrEMBL
Match: A0A0A0K7F1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.4e-75
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDV  DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TN+RTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIEEY
Sbjct: 61  TNVRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAERTVE RVF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

[Close]

BLAST of Clc09G02010 vs. ExPASy TrEMBL
Match: A0A6J1E2W3 (protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.7e-75
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           M+VG DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLR+NIENLEKN I
Sbjct: 1   MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEAL FISL+EERLARQIEEY
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALNFISLREERLARQIEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           TQLIASIKAQIKLVCEGIRELLQLPAER+VEG VF
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERSVEGHVF 155

[Close]

BLAST of Clc09G02010 vs. ExPASy TrEMBL
Match: A0A6J1JPT0 (protein UXT homolog OS=Cucurbita maxima OX=3661 GN=LOC111488735 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.0e-73
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCI 60
           MDVGIDNFR+EKVQRFEEFVDRRLKPDLVHAI+ERDKVFEQQKVFSDLRRNIENLEKN I
Sbjct: 1   MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAISERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEY 120
           TNL TLVNLGSEVYVQG+V DTR IFVDVGLGFHVEFTWSEALKFISLKEERLARQ EEY
Sbjct: 61  TNLTTLVNLGSEVYVQGNVADTRRIFVDVGLGFHVEFTWSEALKFISLKEERLARQTEEY 120

Query: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 156
           T LIASIKAQIKLVCEGIRELLQLPAE+TVEGRVF
Sbjct: 121 THLIASIKAQIKLVCEGIRELLQLPAEKTVEGRVF 155

[Close]

BLAST of Clc09G02010 vs. TAIR 10
Match: AT1G26660.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 80/139 (57.55%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 9   RHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNCITNLRTLVN 68
           R + +Q  EE +D+ LK  LVHA A RDK+FE+QK  SDLR+N+E LEKN + +L+T VN
Sbjct: 5   RQKDLQLLEEIIDKGLKQKLVHATASRDKIFEEQKTLSDLRKNLETLEKNGVNSLKTRVN 64

Query: 69  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIASIK 128
           LGSEVY+Q +VPDTR IF+DVGLGF+VEFT  EAL +I+ +EER  +Q+EEYT +I  IK
Sbjct: 65  LGSEVYMQAEVPDTRHIFMDVGLGFYVEFTRQEALDYIAQREERTQKQLEEYTGVITQIK 124

Query: 129 AQIKLVCEGIRELLQLPAE 148
            +IKL    I+++L LP E
Sbjct: 125 GRIKLAHYQIQQILNLPEE 143

[Close]

BLAST of Clc09G02010 vs. TAIR 10
Match: AT1G26660.2 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 124.4 bits (311), Expect = 8.0e-29
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 8   FRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVF-SDLRRNIENLEKNCITNLRTL 67
           FR   V  F  F   R   +  H I     ++ +   F SDLR+N+E LEKN + +L+T 
Sbjct: 32  FRFIVVSAFVGFAGTRSLKNKKHCIL----LYREDSSFSSDLRKNLETLEKNGVNSLKTR 91

Query: 68  VNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEEYTQLIAS 127
           VNLGSEVY+Q +VPDTR IF+DVGLGF+VEFT  EAL +I+ +EER  +Q+EEYT +I  
Sbjct: 92  VNLGSEVYMQAEVPDTRHIFMDVGLGFYVEFTRQEALDYIAQREERTQKQLEEYTGVITQ 151

Query: 128 IKAQIKLVCEGIRELLQLPAE 148
           IK +IKL    I+++L LP E
Sbjct: 152 IKGRIKLAHYQIQQILNLPEE 168

The following BLAST results are available for this feature:

BLAST of Clc09G02010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462175.1	1.8e-75	96.13	PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like pro...	[more]
XP_004141760.1	1.5e-74	95.48	protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_01637...	[more]
XP_022159095.1	2.0e-74	94.19	protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [M...	[more]
XP_038897562.1	2.0e-74	94.84	protein UXT homolog [Benincasa hispida]	[more]
XP_022992427.1	1.4e-72	93.55	protein UXT homolog [Cucurbita maxima]	[more]

BLAST of Clc09G02010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54ND3	8.3e-23	41.18	Protein UXT homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0285389 PE=3 SV...	[more]
A7T0W1	1.6e-18	39.10	Protein UXT homolog OS=Nematostella vectensis OX=45351 GN=v1g140887 PE=3 SV=1	[more]
Q9WTZ0	2.8e-18	41.98	Protein UXT OS=Mus musculus OX=10090 GN=Uxt PE=1 SV=2	[more]
Q63ZY7	2.8e-18	41.98	Protein UXT OS=Rattus norvegicus OX=10116 GN=Uxt PE=2 SV=1	[more]
Q32P97	3.1e-17	41.22	Protein UXT OS=Bos taurus OX=9913 GN=UXT PE=2 SV=1	[more]

BLAST of Clc09G02010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXW7	8.8e-76	96.13	Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CHV4	8.8e-76	96.13	protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1	[more]
A0A0A0K7F1	7.4e-75	95.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1	[more]
A0A6J1E2W3	9.7e-75	94.19	protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1	[more]
A0A6J1JPT0	7.0e-73	93.55	protein UXT homolog OS=Cucurbita maxima OX=3661 GN=LOC111488735 PE=4 SV=1	[more]

BLAST of Clc09G02010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26660.1	1.3e-39	57.55	Prefoldin chaperone subunit family protein	[more]
AT1G26660.2	8.0e-29	49.65	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 38..58
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	PANTHER	PTHR13345:SF4	PROTEIN UXT	coord: 8..148
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 8..148
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 42..144
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 9..149 e-value: 1.9E-29 score: 104.3
IPR004127	Prefoldin alpha-like	PFAM	PF02996	Prefoldin	coord: 30..134 e-value: 4.0E-18 score: 65.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02010.1	Clc09G02010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003714	transcription corepressor activity