Clc09G01980 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G01980
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	ClcChr09: 1631386 .. 1632988 (+)
RNA-Seq Expression	Clc09G01980
Synteny	Clc09G01980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTTTGTAAAACCTTACCCATAATGATCGACGGCGACACCAGATAAGGCCACAAACAACCACACAAAACAACCATCATGATTTATCTTTCACTGAACACTTCATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTGGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGTCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATGTAAGTTGTAATGTCGAATTTTAGGGGGGTTTTGTGGATTTTCGGAGTATGATTGTGTGTTTTTTTCAGTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATGTGAGTTTCCCTGTTCATTAACTTGATAAAGAACTTGGGTTTTCAATTAGTTTTGATTATTATATGGTTTTGATGTTCTTTTACAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGGTGATTTTACTGCATTAGATCATGTTCTCAACAGGATTTAATCAATACCCTTTTCATTTCTACTTTCTGAATCTTTGTTTATTTGATCATTATGGTAAAATTATTCAGTTCATGACTCAGATAGACAGACATAGAAGTTAAAAGAGTTCAAATTTTGGTGCTATGGCCATTGGAAAATGAAAGAAATGAAGAAGGAATTCAATGTCAACGTTCTGCTATAAGTCTTCTGAATGAAATTTTTACCATTTCAGATCATTGAAGGGACAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGGTAAGAATACAGATGCCATTAGAAATCAAAATGAGTCAATGACTATGGACACTGTCATGTAAATGTTAAGTTCATATGTATTTTACATTCAATTTGTTTGAACATCATTTGTGGCTGAATCAAACAATAGCTCGAGGCAATGCGATGATAAAAGTATAATGAATCTTGTTGTCACATACAGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGGTAATTAGTCGAAATTTGATTGATGATGTTGTTGAATAGAACAGTCTCAGATCAGTCTCCTCCTTTTCACAAAAAATTGATGAGTTTATTGTTTGTTTTCTTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAGTTTAACTCTTTCACTTTTTTTGACCCATCTGAGTCAGCTGAGAAGATTGAGCTATGAACATTAACTCATTCACTTTGGAGCCTTACAAAGACAAGCTCCTTGCCCCAGTACATGTAATTATTCCTTGTTTATATTATACAGTTTATTAGTTTTTTGGGCAATAAATGTTTAAGTGG

mRNA sequence

CAGCTTTGTAAAACCTTACCCATAATGATCGACGGCGACACCAGATAAGGCCACAAACAACCACACAAAACAACCATCATGATTTATCTTTCACTGAACACTTCATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTGGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGTCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATGTGAGTTTCCCTTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATCATTGAAGGGACAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAGTTTAACTCTTTCACTTTTTTTGACCCATCTGAGTCAGCTGAGAAGATTGAGCTATGAACATTAACTCATTCACTTTGGAGCCTTACAAAGACAAGCTCCTTGCCCCAGTACATGTAATTATTCCTTGTTTATATTATACAGTTTATTAGTTTTTTGGGCAATAAATGTTTAAGTGG

Coding sequence (CDS)

ATGATTTATCTTTCACTGAACACTTCATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTGGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGTCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATGTGAGTTTCCCTTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATCATTGAAGGGACAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAG

Protein sequence

MIYLSLNTSFLQPLSQFLKMEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYQKVELSESSESA

Homology

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BLAST of Clc09G01980 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 381.3 bits (978), Expect = 5.5e-102
Identity = 187/201 (93.03%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEALHLGSYRLSSSSSFRSFNYIT+SS TLKRFRPL+FRRA IRAVGTVPQNQSETTDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY    SRFLLNCA
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEIIEG ELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY+KVE+SESSESA
Sbjct: 181 EWKAHEWGYEKVEISESSESA 197

[Close]

BLAST of Clc09G01980 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 185/201 (92.04%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEA HLGSYRLSSSSS RSFNYITNS+HTLKR RPL FRRA+IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY    SRFLLNCA
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY+KVELSESSES+
Sbjct: 181 EWKAHEWGYEKVELSESSESS 197

[Close]

BLAST of Clc09G01980 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 8.0e-101
Identity = 183/200 (91.50%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEALHLGSY L SSSSFRSFNYITNSSHTLKRFRPLTFRR Q+RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSES 220
           EWKAHEWGY++VELS+SSES
Sbjct: 181 EWKAHEWGYEEVELSDSSES 196

[Close]

BLAST of Clc09G01980 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 6.7e-100
Identity = 182/201 (90.55%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTVPQ+QSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY++V+LSE SESA
Sbjct: 181 EWKAHEWGYEEVDLSELSESA 197

[Close]

BLAST of Clc09G01980 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 182/201 (90.55%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTV Q+QSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY++V+LSE SESA
Sbjct: 181 EWKAHEWGYEEVDLSELSESA 197

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BLAST of Clc09G01980 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.4e-61
Identity = 121/196 (61.73%), Postives = 140/196 (71.43%), Query Frame = 0


Query: 25  LGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRAQIRAVGTVPQNQSET 84
           +GS +LS S    S     + SH  K  +P ++         R   +RA+ T P +Q   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 85  TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRF 144
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPY    S+ 
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPY----SKP 120

Query: 145 LLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLV 204
           L NCAG GTC TCMVEI+ G ELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V
Sbjct: 121 LSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVV 180

Query: 205 VQQLPEWKAHEWGYQK 211
           +QQLPEWKAHEW   K
Sbjct: 181 IQQLPEWKAHEWNIPK 192

[Close]

BLAST of Clc09G01980 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 185/201 (92.04%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEA HLGSYRLSSSSS RSFNYITNS+HTLKR RPL FRRA+IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY    SRFLLNCA
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY+KVELSESSES+
Sbjct: 181 EWKAHEWGYEKVELSESSESS 197

[Close]

BLAST of Clc09G01980 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 183/200 (91.50%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEALHLGSY L SSSSFRSFNYITNSSHTLKRFRPLTFRR Q+RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSES 220
           EWKAHEWGY++VELS+SSES
Sbjct: 181 EWKAHEWGYEEVELSDSSES 196

[Close]

BLAST of Clc09G01980 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.3e-100
Identity = 182/201 (90.55%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTVPQ+QSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY++V+LSE SESA
Sbjct: 181 EWKAHEWGYEEVDLSELSESA 197

[Close]

BLAST of Clc09G01980 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.6e-100
Identity = 182/201 (90.55%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTV Q+QSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPY    SRFLLNCA
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY++V+LSE SESA
Sbjct: 181 EWKAHEWGYEEVDLSELSESA 197

[Close]

BLAST of Clc09G01980 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.0e-94
Identity = 171/201 (85.07%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 20  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 79
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTFRR++IRAVGTVPQ+QS+T++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 80  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRFLLNCA 139
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPY    SRFLLNCA
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPY----SRFLLNCA 120

Query: 140 GGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLP 199
           GGGTCGTCMVEI+EG ELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLP
Sbjct: 121 GGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLP 180

Query: 200 EWKAHEWGYQKVELSESSESA 221
           EWKAHEWGY+KVELSESSES+
Sbjct: 181 EWKAHEWGYEKVELSESSESS 191

[Close]

BLAST of Clc09G01980 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 235.0 bits (598), Expect = 5.9e-62
Identity = 121/196 (61.73%), Postives = 140/196 (71.43%), Query Frame = 0


Query: 25  LGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRAQIRAVGTVPQNQSET 84
           +GS +LS S    S     + SH  K  +P ++         R   +RA+ T P +Q   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 85  TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYVSFPSRF 144
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPY    S+ 
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPY----SKP 120

Query: 145 LLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLV 204
           L NCAG GTC TCMVEI+ G ELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V
Sbjct: 121 LSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVV 180

Query: 205 VQQLPEWKAHEWGYQK 211
           +QQLPEWKAHEW   K
Sbjct: 181 IQQLPEWKAHEWNIPK 192

[Close]

BLAST of Clc09G01980 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-28
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 59  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 118
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 119 RNIMLDSNIELYGPYVSFPSRFLLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRK 178
           R+IM D+ IELY  Y       ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+K
Sbjct: 88  RSIMQDNKIELYAAYGK-----VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKK 147

Query: 179 PKNWRLACQTTVGKPDSRGMLVVQQLPEWK 203
           P++WRLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 PESWRLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of Clc09G01980 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-23
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 59  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 118
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 119 RNIMLDSNIELYGPYVSFPSRFLLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKRK 178
           R+IM D+ IELY  Y       ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+K
Sbjct: 88  RSIMQDNKIELYAAYGK-----VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKK 147

Query: 179 PKNWRLACQTTVGKPDSRG 192
           P++WRLACQT VG  ++ G
Sbjct: 148 PESWRLACQTIVGNKENSG 161

[Close]

BLAST of Clc09G01980 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-15
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 59  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 118
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 119 RNIMLDSNIELYGPYVSFPSRFLLNCAGGGTCGTCMVEIIEGTELLNPRTDIEKDKLKR 172
           R+IM D+ IELY  Y       ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-----VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of Clc09G01980 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 59  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 118
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 119 RNIMLDSNIELYGPYVSFPSRFLLNCAGGGTCGTCMVE 151
           R+IM D+ IELY  Y       ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-----VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of Clc09G01980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899995.1	5.5e-102	93.03	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]
XP_022145222.1	2.1e-101	92.04	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_004141758.1	8.0e-101	91.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
KAA0059320.1	6.7e-100	90.55	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_008462178.1	1.1e-99	90.55	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]

BLAST of Clc09G01980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	8.4e-61	61.73	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Clc09G01980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ7	1.0e-101	92.04	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A0A0KC78	3.9e-101	91.50	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A5A7UW39	3.3e-100	90.55	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CGA8	5.6e-100	90.55	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1KDJ1	2.0e-94	85.07	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of Clc09G01980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	5.9e-62	61.73	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	3.3e-28	42.00	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.9e-23	41.01	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	5.5e-15	37.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	1.7e-08	34.69	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 92..204 e-value: 2.9E-18 score: 67.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 136..184 e-value: 9.0E-10 score: 38.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 109..184 e-value: 2.53016E-7 score: 45.0784
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 20..211
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 20..211
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 103..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G01980.2	Clc09G01980.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding