Clc09G01540 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G01540
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr09: 1286409 .. 1287453 (-)
RNA-Seq Expression	Clc09G01540
Synteny	Clc09G01540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATAAATAATAATAATAATAATAATAATAATAAAAAGCAAAGTCCAACCCTAAGTCTTCCCTCTCCCTCTTCTTTAAATCTCTCCCTCTTCTTCTTCTTCCCATTTCAAATTTCCCAATCCCAAATTCCATTTCTCTTCATTTTTTCCCCATGGAAGAACACGCATCCACAATCAATCACCCATTCGGCGGCTCATCTGCAATGGAACTTACCGGCAAAATCATGCTCGCGGCCATTTTAATCCTCTGCTTAGTCATTGCCTTCGTTCTCCTTCTCCAGCTTTACTCCCGATGGTTCTTATCCCGCCTTCACCAATCCACCCCGGATTCCGCCGCTAATCCTGAATCCCCTGTTCCTACTACATTGCAGAAAGGCCTTGATTCCGCCGTCCTCCACTCACTTCCGGTGGTGGTGTTCTCGCCGGCGGATTTCAAAGACGGATTAGAATGTGCTGTGTGTTTGTCGGAGTTAGGTGAAGGTGAGAAAGCTCGACTGCTTCCGAGATGTAACCATGGCTTCCATGTCGATTGTATTGACATGTGGTTCAAATCCAATTCCACTTGCCCTCTTTGCAGAAACCCAGTGGCACTTACAGAATCAAATTCTTCAAAGAATTTGGAACCTGGGTCTTTAATGGAGTCTCCAATTTTTCCTACGAATGTTCTGTTTTGGGGGAATCAAATGCAGGTCAGTTCTAGAGGGGTTTGTTTGGAAGAATCTCAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATGGAATGGTGGTAGTTGACATTCCAGACGAGCCCTCTACGTCAAACTCCGGCGCCGGAACCTGTTTGGCCGAAGAAGAGGTGAAATCAGTTGTGACAAACAGATTGAGAACATTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAACAATCCCGGTTCTTCAGATCTTGAACAAGTGGAGATAGGGCAGAGTTAGAGAAAATTTAGAAAAAAATCAACGCTTATTCTTTTAAAAATCTTTTGGACATATAGAGTTAG

mRNA sequence

ATAATAAATAATAATAATAATAATAATAATAATAAAAAGCAAAGTCCAACCCTAAGTCTTCCCTCTCCCTCTTCTTTAAATCTCTCCCTCTTCTTCTTCTTCCCATTTCAAATTTCCCAATCCCAAATTCCATTTCTCTTCATTTTTTCCCCATGGAAGAACACGCATCCACAATCAATCACCCATTCGGCGGCTCATCTGCAATGGAACTTACCGGCAAAATCATGCTCGCGGCCATTTTAATCCTCTGCTTAGTCATTGCCTTCGTTCTCCTTCTCCAGCTTTACTCCCGATGGTTCTTATCCCGCCTTCACCAATCCACCCCGGATTCCGCCGCTAATCCTGAATCCCCTGTTCCTACTACATTGCAGAAAGGCCTTGATTCCGCCGTCCTCCACTCACTTCCGGTGGTGGTGTTCTCGCCGGCGGATTTCAAAGACGGATTAGAATGTGCTGTGTGTTTGTCGGAGTTAGGTGAAGGTGAGAAAGCTCGACTGCTTCCGAGATGTAACCATGGCTTCCATGTCGATTGTATTGACATGTGGTTCAAATCCAATTCCACTTGCCCTCTTTGCAGAAACCCAGTGGCACTTACAGAATCAAATTCTTCAAAGAATTTGGAACCTGGGTCTTTAATGGAGTCTCCAATTTTTCCTACGAATGTTCTGTTTTGGGGGAATCAAATGCAGGTCAGTTCTAGAGGGGTTTGTTTGGAAGAATCTCAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATGGAATGGTGGTAGTTGACATTCCAGACGAGCCCTCTACGTCAAACTCCGGCGCCGGAACCTGTTTGGCCGAAGAAGAGGTGAAATCAGTTGTGACAAACAGATTGAGAACATTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAACAATCCCGGTTCTTCAGATCTTGAACAAGTGGAGATAGGGCAGAGTTAGAGAAAATTTAGAAAAAAATCAACGCTTATTCTTTTAAAAATCTTTTGGACATATAGAGTTAG

Coding sequence (CDS)

ATGGAAGAACACGCATCCACAATCAATCACCCATTCGGCGGCTCATCTGCAATGGAACTTACCGGCAAAATCATGCTCGCGGCCATTTTAATCCTCTGCTTAGTCATTGCCTTCGTTCTCCTTCTCCAGCTTTACTCCCGATGGTTCTTATCCCGCCTTCACCAATCCACCCCGGATTCCGCCGCTAATCCTGAATCCCCTGTTCCTACTACATTGCAGAAAGGCCTTGATTCCGCCGTCCTCCACTCACTTCCGGTGGTGGTGTTCTCGCCGGCGGATTTCAAAGACGGATTAGAATGTGCTGTGTGTTTGTCGGAGTTAGGTGAAGGTGAGAAAGCTCGACTGCTTCCGAGATGTAACCATGGCTTCCATGTCGATTGTATTGACATGTGGTTCAAATCCAATTCCACTTGCCCTCTTTGCAGAAACCCAGTGGCACTTACAGAATCAAATTCTTCAAAGAATTTGGAACCTGGGTCTTTAATGGAGTCTCCAATTTTTCCTACGAATGTTCTGTTTTGGGGGAATCAAATGCAGGTCAGTTCTAGAGGGGTTTGTTTGGAAGAATCTCAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATGGAATGGTGGTAGTTGACATTCCAGACGAGCCCTCTACGTCAAACTCCGGCGCCGGAACCTGTTTGGCCGAAGAAGAGGTGAAATCAGTTGTGACAAACAGATTGAGAACATTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAACAATCCCGGTTCTTCAGATCTTGAACAAGTGGAGATAGGGCAGAGTTAG

Protein sequence

MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDSAANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKSVVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS

Homology

[Close]

BLAST of Clc09G01540 vs. NCBI nr
Match: XP_004141825.2 (RING-H2 finger protein ATL60 [Cucumis sativus] >KGN45435.1 hypothetical protein Csa_016496 [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 1.9e-115
Identity = 229/276 (82.97%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEE ASTI+HPFG S AMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQS+ DS
Sbjct: 1   MEEQASTISHPFGDSIAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           A N ESPV TTL+KGLDSAVLHS+PVVVFSPADFK+GLECAVCLSEL EGEKARLLPRCN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPVA+TE NS +N E GS MESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNSEQNPETGSSMESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRGVCLEE Q        SSSSSS+SSS N MVV+DIP+EPST  SGAGTC A+EE+ S
Sbjct: 181 SSRGVCLEEPQI-------SSSSSSTSSSINTMVVIDIPNEPST--SGAGTCFADEEMGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIG NP  SD+EQ  I QS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGTNPIPSDIEQEGIVQS 267

[Close]

BLAST of Clc09G01540 vs. NCBI nr
Match: XP_008462235.1 (PREDICTED: RING-H2 finger protein ATL60-like [Cucumis melo] >KAA0059353.1 RING-H2 finger protein ATL60-like [Cucumis melo var. makuwa] >TYK03973.1 RING-H2 finger protein ATL60-like [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-114
Identity = 227/276 (82.25%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           ME  ASTINHPFG S AM+LTGKIM AAILILCLVIAFVLLLQLYSRWFLSRLHQS+ DS
Sbjct: 1   MEAQASTINHPFGDSFAMQLTGKIMFAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           A N ESPV TTL+KGLDSAVLHS+PVVVFSPADFK+GLECAVCLSEL EGEKARLLPRCN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPVA+TE N  +N E  S  ESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNLEQNPETESSTESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRGVCLEE Q     SSSSSSS SS SS+N MVV+DIP +PST  SGA TC A+EE+ S
Sbjct: 181 SSRGVCLEEPQI----SSSSSSSPSSPSSANAMVVIDIPSQPST--SGASTCFADEEMGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIGNNP SSD+EQ  IGQS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGNNPISSDIEQEGIGQS 270

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BLAST of Clc09G01540 vs. NCBI nr
Match: XP_038897361.1 (RING-H2 finger protein ATL60-like [Benincasa hispida])

HSP 1 Score: 420.6 bits (1080), Expect = 1.0e-113
Identity = 224/276 (81.16%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEEHASTIN PFGGS AMELTGKIMLAAILILCLVIAFVL+LQLYSRWFLS +HQS+PDS
Sbjct: 1   MEEHASTINRPFGGSFAMELTGKIMLAAILILCLVIAFVLILQLYSRWFLSHIHQSSPDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           AAN ESPV +TL KGLDSA+L S+PVVVFSPADF++GLECAVCLSEL EGEKARLLP CN
Sbjct: 61  AANHESPVSSTLHKGLDSALLQSIPVVVFSPADFEEGLECAVCLSELSEGEKARLLPICN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPV  TESNS  NLE GS MESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVIPTESNSEHNLESGSSMESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRG+CLEESQ        SSSS+++ +  NGMVV+DIP+EPST  SGAG C A+EE  S
Sbjct: 181 SSRGICLEESQI-------SSSSANTRADGNGMVVIDIPNEPST--SGAGGCFADEETGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIGNN  SSDLEQV I QS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGNNLTSSDLEQVGIVQS 267

[Close]

BLAST of Clc09G01540 vs. NCBI nr
Match: KAG6593587.1 (RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025931.1 RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.2e-95
Identity = 202/279 (72.40%), Postives = 231/279 (82.80%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEEHAS I+  F GS  MEL GKIM AAI IL LVI FVL+LQLYSRW LSR+H+S+ DS
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIHESSSDS 60

Query: 61  A----ANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLL 120
           A    ++ ES V  TL KGLD+AVL  +PVVVFSP DFK+GLECAVCLSEL +GEKARLL
Sbjct: 61  AVLRRSDQESDV-ATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKARLL 120

Query: 121 PRCNHGFHVDCIDMWFKSNSTCPLCRNPVA-----LTESNSSKNLEPGSLMESPIFPTNV 180
           PRCNHGFHVDCIDMWFKSNSTCPLCR+PVA      TE NS+++LE GS MESPIFPTN+
Sbjct: 121 PRCNHGFHVDCIDMWFKSNSTCPLCRDPVAPKPSIPTEMNSAEDLESGSSMESPIFPTNI 180

Query: 181 LFWGNQMQVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGT 240
           LFWGNQMQ+SSRGVCLEE+QT   SSSSSSSSSSS+  ++GMVV+DIP+EPS+S+SG G 
Sbjct: 181 LFWGNQMQISSRGVCLEEAQT---SSSSSSSSSSSNIRADGMVVIDIPNEPSSSSSGTGG 240

Query: 241 CLAEEEVKSVVTNRLRTLKRLLSRERRIGNNPGSSDLEQ 271
             A EE+KSVVT+RL+TLKRLLSRERRIGNN  S +LEQ
Sbjct: 241 RSAGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQ 275

[Close]

BLAST of Clc09G01540 vs. NCBI nr
Match: XP_022147071.1 (RING-H2 finger protein ATL3-like [Momordica charantia])

HSP 1 Score: 357.5 bits (916), Expect = 1.1e-94
Identity = 199/284 (70.07%), Postives = 229/284 (80.63%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEEH S I  PFGGS AMELTGKIMLAAILIL LVI FVL+LQLYSRWFLSR+ +STPDS
Sbjct: 1   MEEHTSRITRPFGGSFAMELTGKIMLAAILILFLVIIFVLVLQLYSRWFLSRIVESTPDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           AA+  S    +L+KGLD+AVL SLPV+VF  ADF++GLECAVCLSEL +GE+ARLLPRCN
Sbjct: 61  AASHGSG-QDSLRKGLDAAVLRSLPVLVFEAADFEEGLECAVCLSELAQGERARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAL-----TESNSSKNLEPGSLMESPIFPTNVLFWG 180
           HGFHVDCIDMWFKSNSTCPLCRNPVAL     ++SNS+++LE GS +ESPIFPTNVLFWG
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALQALNPSQSNSAEDLESGSSIESPIFPTNVLFWG 180

Query: 181 NQMQVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGT--CL 240
           NQMQVSSRGVCLEE+ T         SSSS+++  +G+V +DIP+EPS S+SGAG   C 
Sbjct: 181 NQMQVSSRGVCLEEAPT---------SSSSANTRPDGVVAIDIPNEPSASSSGAGAGGCT 240

Query: 241 AEEEVKSVVTNRLRTLKRLLSRERRIGNNP-GSSDLEQVEIGQS 277
            +EE+KS +T RLRTLKRLLS ERR G N    SDLEQV  GQS
Sbjct: 241 GDEEMKSALTTRLRTLKRLLSGERRAGGNSLTPSDLEQVGRGQS 274

[Close]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 125/312 (40.06%), Postives = 165/312 (52.88%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           M+E + +    F      E  GK++L +I+ +   I F+LLL LY+R F  R+ Q    +
Sbjct: 1   MDEESVSNGSLFSKFEGEETMGKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLN 60

Query: 61  AANPESPVPTTLQK--------------------GLDSAVLHSLPVVVFSPADFKDGLEC 120
               + P  T + +                    GLDS +L S+ VVVF   DFKDGLEC
Sbjct: 61  LIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDFKDGLEC 120

Query: 121 AVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNS-------- 180
           AVCLS+L +G+KAR+LPRCNHGFHVDCIDMWF+S+STCPLCRN V   E  +        
Sbjct: 121 AVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLP 180

Query: 181 -SKNLEPG----------------SLMESPI-FPTNVLFWGNQMQVSSRGVCLEESQTSS 240
            ++N E G                     P+ FPTNVL WG+Q QV S G+ + E   S 
Sbjct: 181 QNQNFESGHSTNQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSG 240

Query: 241 SSSSSSSSSSSSSSSSNGM----VVVDIPDEPSTSNSGAGTCLAEEEVKSVVTNRLRTLK 263
           + ++S +     SSS+       VVVDIPD  S + S     + EEE KS +  RLR LK
Sbjct: 241 NFAASYNDHQQESSSTRSQEVTAVVVDIPDNSSENLSER---IDEEEPKSPMFTRLRLLK 300

[Close]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-42
Identity = 123/318 (38.68%), Postives = 171/318 (53.77%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSR---WFLSRLHQST 60
           M+++ ST +  FG  S  E+T KI+L AI++L + + FVL+L LY++   W + +L Q  
Sbjct: 1   MDDNRSTHSSMFGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQ 60

Query: 61  PDSAANPES---------PVPTTLQK---------------GLDSAVLHSLPVVVFSPAD 120
                  E          PV T  Q+               GL S  L SLP+V F    
Sbjct: 61  QQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDS 120

Query: 121 FKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSS 180
            KDGLEC++CLSEL +G+KARLLP+CNH FHV+CIDMWF+S+STCP+CRN V   E  SS
Sbjct: 121 CKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180

Query: 181 KNLE--PGSL-----------------MESPIFPTNVLFWGNQMQVSSRGVCLEESQTSS 240
           K +E  P +                    SP FPTNVL WG Q QVS        +  ++
Sbjct: 181 KRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNVLVWGRQDQVS--------TGNTN 240

Query: 241 SSSSSSSSSSSSSSSSNGMVVVDIPDEP------STSNSGAGTCLAEEEVKSVVTNRLRT 267
             +    ++ + +S S   VV+DI D        S+S+S     + EEE KS +T RLR+
Sbjct: 241 VGTQEDGAAGNGASQSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTTRLRS 300

[Close]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-24
Identity = 93/277 (33.57%), Postives = 133/277 (48.01%), Query Frame = 0


Query: 12  FGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQ------------STPD 71
           F GS    ++GKIML+AI+IL  V+  ++ L LY+RW+L R  +            +   
Sbjct: 18  FSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVF 77

Query: 72  SAANPESPVPTTL-QKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPR 131
             A+P +   + +  +GLD  V+ SLPV  FS    KD +ECAVCLSE  E E  R+LP 
Sbjct: 78  FTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPN 137

Query: 132 CNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQM 191
           C H FHVDCIDMWF S+STCPLCR   +L ES +       +     +           +
Sbjct: 138 CQHTFHVDCIDMWFHSHSTCPLCR---SLVESLAGIESTAAAREREVV-----------I 197

Query: 192 QVSSRGVCLEESQTSSSSSSSSSSSSSS----SSSSNGMVVVDIP--------DEPSTSN 251
            V S  V + E  +SS  +     S SS      S      +++P        DE +  +
Sbjct: 198 AVDSDPVLVIEPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRD 257

Query: 252 SGAGTCLAEEEVKSVVTNRLRTLKRLLSRERRIGNNP 264
           S A              +R+ +  R+LSR+RR  ++P
Sbjct: 258 SPASQSFRSP------MSRMLSFTRMLSRDRRSASSP 274

[Close]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 15  SSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS-AANPESPVPTTLQ 74
           SS   L GKIML+++++L + +  +L    Y+RW   R ++       ++  +   +   
Sbjct: 19  SSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRD 78

Query: 75  KGLDSAVLHSLPVVVFS---PADFKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDM 134
           + LD AVL  +P+ V+S   P   ++  EC+VCLSE  E ++ RLLP+C H FHVDCID 
Sbjct: 79  QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDT 138

Query: 135 WFKSNSTCPLCRNPV----ALTESNSSKNLEP 159
           WF+S STCPLCR PV     + E+ SS +  P
Sbjct: 139 WFRSRSTCPLCRAPVQPPFQVIETGSSSSSSP 170

[Close]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 84/246 (34.15%), Postives = 119/246 (48.37%), Query Frame = 0


Query: 8   INHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFL--------SRLHQSTPD 67
           +NH   GSS   L GKIMLA+++IL + +  +L    Y+RW           R+      
Sbjct: 15  MNH---GSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRS 74

Query: 68  SAANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGL-ECAVCLSELGEGEKARLLPR 127
            AA  +    ++    LD  VL  +P+ V+S    +  L EC+VCLSE  E ++ R+LP+
Sbjct: 75  LAAARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPK 134

Query: 128 CNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQM 187
           C H FHVDCID WF+S S+CPLCR PV   +  +    EP + +   + P          
Sbjct: 135 CGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEP--EPVAAVFPSVKP---------- 194

Query: 188 QVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMV-----------------VVDIPDE 228
                   +E+++  SSSSS  S SS+ SSSS   V                 +V+IP E
Sbjct: 195 --------IEDTEAGSSSSSDESESSTPSSSSGSPVRFPMEACEREPIDLVGIIVEIPRE 237

[Close]

BLAST of Clc09G01540 vs. ExPASy TrEMBL
Match: A0A0A0K6T2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G447970 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 9.1e-116
Identity = 229/276 (82.97%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEE ASTI+HPFG S AMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQS+ DS
Sbjct: 1   MEEQASTISHPFGDSIAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           A N ESPV TTL+KGLDSAVLHS+PVVVFSPADFK+GLECAVCLSEL EGEKARLLPRCN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPVA+TE NS +N E GS MESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNSEQNPETGSSMESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRGVCLEE Q        SSSSSS+SSS N MVV+DIP+EPST  SGAGTC A+EE+ S
Sbjct: 181 SSRGVCLEEPQI-------SSSSSSTSSSINTMVVIDIPNEPST--SGAGTCFADEEMGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIG NP  SD+EQ  I QS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGTNPIPSDIEQEGIVQS 267

[Close]

BLAST of Clc09G01540 vs. ExPASy TrEMBL
Match: A0A5D3BW46 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001700 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 227/276 (82.25%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           ME  ASTINHPFG S AM+LTGKIM AAILILCLVIAFVLLLQLYSRWFLSRLHQS+ DS
Sbjct: 1   MEAQASTINHPFGDSFAMQLTGKIMFAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           A N ESPV TTL+KGLDSAVLHS+PVVVFSPADFK+GLECAVCLSEL EGEKARLLPRCN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPVA+TE N  +N E  S  ESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNLEQNPETESSTESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRGVCLEE Q     SSSSSSS SS SS+N MVV+DIP +PST  SGA TC A+EE+ S
Sbjct: 181 SSRGVCLEEPQI----SSSSSSSPSSPSSANAMVVIDIPSQPST--SGASTCFADEEMGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIGNNP SSD+EQ  IGQS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGNNPISSDIEQEGIGQS 270

[Close]

BLAST of Clc09G01540 vs. ExPASy TrEMBL
Match: A0A1S3CH08 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103500641 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 227/276 (82.25%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           ME  ASTINHPFG S AM+LTGKIM AAILILCLVIAFVLLLQLYSRWFLSRLHQS+ DS
Sbjct: 1   MEAQASTINHPFGDSFAMQLTGKIMFAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           A N ESPV TTL+KGLDSAVLHS+PVVVFSPADFK+GLECAVCLSEL EGEKARLLPRCN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQMQV 180
           HGFHVDCIDMWFKSNSTCPLCRNPVA+TE N  +N E  S  ESPIFPTNVLFWGNQMQV
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNLEQNPETESSTESPIFPTNVLFWGNQMQV 180

Query: 181 SSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGTCLAEEEVKS 240
           SSRGVCLEE Q     SSSSSSS SS SS+N MVV+DIP +PST  SGA TC A+EE+ S
Sbjct: 181 SSRGVCLEEPQI----SSSSSSSPSSPSSANAMVVIDIPSQPST--SGASTCFADEEMGS 240

Query: 241 VVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
           VVTNRLRTLKRLLSRERRIGNNP SSD+EQ  IGQS
Sbjct: 241 VVTNRLRTLKRLLSRERRIGNNPISSDIEQEGIGQS 270

[Close]

BLAST of Clc09G01540 vs. ExPASy TrEMBL
Match: A0A6J1D188 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016097 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.2e-95
Identity = 199/284 (70.07%), Postives = 229/284 (80.63%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEEH S I  PFGGS AMELTGKIMLAAILIL LVI FVL+LQLYSRWFLSR+ +STPDS
Sbjct: 1   MEEHTSRITRPFGGSFAMELTGKIMLAAILILFLVIIFVLVLQLYSRWFLSRIVESTPDS 60

Query: 61  AANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCN 120
           AA+  S    +L+KGLD+AVL SLPV+VF  ADF++GLECAVCLSEL +GE+ARLLPRCN
Sbjct: 61  AASHGSG-QDSLRKGLDAAVLRSLPVLVFEAADFEEGLECAVCLSELAQGERARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAL-----TESNSSKNLEPGSLMESPIFPTNVLFWG 180
           HGFHVDCIDMWFKSNSTCPLCRNPVAL     ++SNS+++LE GS +ESPIFPTNVLFWG
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVALQALNPSQSNSAEDLESGSSIESPIFPTNVLFWG 180

Query: 181 NQMQVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGT--CL 240
           NQMQVSSRGVCLEE+ T         SSSS+++  +G+V +DIP+EPS S+SGAG   C 
Sbjct: 181 NQMQVSSRGVCLEEAPT---------SSSSANTRPDGVVAIDIPNEPSASSSGAGAGGCT 240

Query: 241 AEEEVKSVVTNRLRTLKRLLSRERRIGNNP-GSSDLEQVEIGQS 277
            +EE+KS +T RLRTLKRLLS ERR G N    SDLEQV  GQS
Sbjct: 241 GDEEMKSALTTRLRTLKRLLSGERRAGGNSLTPSDLEQVGRGQS 274

[Close]

BLAST of Clc09G01540 vs. ExPASy TrEMBL
Match: A0A6J1HKG4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464366 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.0e-94
Identity = 201/285 (70.53%), Postives = 231/285 (81.05%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           MEEHAS I+  F GS  MEL GKIM AAI IL LVI FVL+LQLYSRW LSR+H+S+ DS
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIHESSSDS 60

Query: 61  A----ANPESPVPTTLQKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLL 120
           A    ++ ES V  TL KGLD+AVL  +PVVVFSP DFK+GLECAVCLSEL +GEK RLL
Sbjct: 61  AVLRRSDQESDV-ATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKVRLL 120

Query: 121 PRCNHGFHVDCIDMWFKSNSTCPLCRNPVA-----LTESNSSKNLEPGSLMESPIFPTNV 180
           PRC+HGFHVDCIDMWFKSNSTCPLCR+PVA      TE NS+++LE GS MESPIFPTN+
Sbjct: 121 PRCSHGFHVDCIDMWFKSNSTCPLCRDPVAPKPSIPTEMNSAEDLESGSSMESPIFPTNI 180

Query: 181 LFWGNQMQVSSRGVCLEESQTSSSSSSSSSSSSSSSSSSNGMVVVDIPDEPSTSNSGAGT 240
           LFWGNQMQ+SSRGVCLEE+QT   SSSSSSSSSSS+  ++GMVV+DIP+EPS+S+SG   
Sbjct: 181 LFWGNQMQISSRGVCLEEAQT---SSSSSSSSSSSNIRADGMVVIDIPNEPSSSSSGTSG 240

Query: 241 CLAEEEVKSVVTNRLRTLKRLLSRERRIGNNPGSSDLEQVEIGQS 277
             A EE+KSVVT+RL+TLKRLLSRERRIGNN  S +LEQ    QS
Sbjct: 241 RSAGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 281

[Close]

BLAST of Clc09G01540 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-44
Identity = 125/312 (40.06%), Postives = 165/312 (52.88%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS 60
           M+E + +    F      E  GK++L +I+ +   I F+LLL LY+R F  R+ Q    +
Sbjct: 1   MDEESVSNGSLFSKFEGEETMGKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLN 60

Query: 61  AANPESPVPTTLQK--------------------GLDSAVLHSLPVVVFSPADFKDGLEC 120
               + P  T + +                    GLDS +L S+ VVVF   DFKDGLEC
Sbjct: 61  LIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDFKDGLEC 120

Query: 121 AVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNS-------- 180
           AVCLS+L +G+KAR+LPRCNHGFHVDCIDMWF+S+STCPLCRN V   E  +        
Sbjct: 121 AVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLP 180

Query: 181 -SKNLEPG----------------SLMESPI-FPTNVLFWGNQMQVSSRGVCLEESQTSS 240
            ++N E G                     P+ FPTNVL WG+Q QV S G+ + E   S 
Sbjct: 181 QNQNFESGHSTNQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSG 240

Query: 241 SSSSSSSSSSSSSSSSNGM----VVVDIPDEPSTSNSGAGTCLAEEEVKSVVTNRLRTLK 263
           + ++S +     SSS+       VVVDIPD  S + S     + EEE KS +  RLR LK
Sbjct: 241 NFAASYNDHQQESSSTRSQEVTAVVVDIPDNSSENLSER---IDEEEPKSPMFTRLRLLK 300

[Close]

BLAST of Clc09G01540 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43
Identity = 123/318 (38.68%), Postives = 171/318 (53.77%), Query Frame = 0


Query: 1   MEEHASTINHPFGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSR---WFLSRLHQST 60
           M+++ ST +  FG  S  E+T KI+L AI++L + + FVL+L LY++   W + +L Q  
Sbjct: 1   MDDNRSTHSSMFGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQ 60

Query: 61  PDSAANPES---------PVPTTLQK---------------GLDSAVLHSLPVVVFSPAD 120
                  E          PV T  Q+               GL S  L SLP+V F    
Sbjct: 61  QQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDS 120

Query: 121 FKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSS 180
            KDGLEC++CLSEL +G+KARLLP+CNH FHV+CIDMWF+S+STCP+CRN V   E  SS
Sbjct: 121 CKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180

Query: 181 KNLE--PGSL-----------------MESPIFPTNVLFWGNQMQVSSRGVCLEESQTSS 240
           K +E  P +                    SP FPTNVL WG Q QVS        +  ++
Sbjct: 181 KRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNVLVWGRQDQVS--------TGNTN 240

Query: 241 SSSSSSSSSSSSSSSSNGMVVVDIPDEP------STSNSGAGTCLAEEEVKSVVTNRLRT 267
             +    ++ + +S S   VV+DI D        S+S+S     + EEE KS +T RLR+
Sbjct: 241 VGTQEDGAAGNGASQSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTTRLRS 300

[Close]

BLAST of Clc09G01540 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-25
Identity = 93/277 (33.57%), Postives = 133/277 (48.01%), Query Frame = 0


Query: 12  FGGSSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQ------------STPD 71
           F GS    ++GKIML+AI+IL  V+  ++ L LY+RW+L R  +            +   
Sbjct: 18  FSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVF 77

Query: 72  SAANPESPVPTTL-QKGLDSAVLHSLPVVVFSPADFKDGLECAVCLSELGEGEKARLLPR 131
             A+P +   + +  +GLD  V+ SLPV  FS    KD +ECAVCLSE  E E  R+LP 
Sbjct: 78  FTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPN 137

Query: 132 CNHGFHVDCIDMWFKSNSTCPLCRNPVALTESNSSKNLEPGSLMESPIFPTNVLFWGNQM 191
           C H FHVDCIDMWF S+STCPLCR   +L ES +       +     +           +
Sbjct: 138 CQHTFHVDCIDMWFHSHSTCPLCR---SLVESLAGIESTAAAREREVV-----------I 197

Query: 192 QVSSRGVCLEESQTSSSSSSSSSSSSSS----SSSSNGMVVVDIP--------DEPSTSN 251
            V S  V + E  +SS  +     S SS      S      +++P        DE +  +
Sbjct: 198 AVDSDPVLVIEPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRD 257

Query: 252 SGAGTCLAEEEVKSVVTNRLRTLKRLLSRERRIGNNP 264
           S A              +R+ +  R+LSR+RR  ++P
Sbjct: 258 SPASQSFRSP------MSRMLSFTRMLSRDRRSASSP 274

[Close]

BLAST of Clc09G01540 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-25
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 15  SSAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDS-AANPESPVPTTLQ 74
           SS   L GKIML+++++L + +  +L    Y+RW   R ++       ++  +   +   
Sbjct: 19  SSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRD 78

Query: 75  KGLDSAVLHSLPVVVFS---PADFKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDM 134
           + LD AVL  +P+ V+S   P   ++  EC+VCLSE  E ++ RLLP+C H FHVDCID 
Sbjct: 79  QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDT 138

Query: 135 WFKSNSTCPLCRNPV----ALTESNSSKNLEP 159
           WF+S STCPLCR PV     + E+ SS +  P
Sbjct: 139 WFRSRSTCPLCRAPVQPPFQVIETGSSSSSSP 170

[Close]

BLAST of Clc09G01540 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-23
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 25  MLAAILILCLVIAFVLLLQLYSRWFLSRLHQSTPDSAANPESPVPTTLQKGLDSAVLHSL 84
           ML   +++ L++  ++ L LY RW+L R       +AA+     P++   GL+ +++ SL
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSL 60

Query: 85  PVVVFSPADFKDGLECAVCLSELGEGEKARLLPRCNHGFHVDCIDMWFKSNSTCPLCRN 144
           P+  FS       +EC+VCLSE  + E  R++P C H FHVDCIDMWF S+S+CPLCR+
Sbjct: 61  PIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSSCPLCRS 119

The following BLAST results are available for this feature:

BLAST of Clc09G01540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141825.2	1.9e-115	82.97	RING-H2 finger protein ATL60 [Cucumis sativus] >KGN45435.1 hypothetical protein ...	[more]
XP_008462235.1	3.5e-114	82.25	PREDICTED: RING-H2 finger protein ATL60-like [Cucumis melo] >KAA0059353.1 RING-H...	[more]
XP_038897361.1	1.0e-113	81.16	RING-H2 finger protein ATL60-like [Benincasa hispida]	[more]
KAG6593587.1	2.2e-95	72.40	RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022147071.1	1.1e-94	70.07	RING-H2 finger protein ATL3-like [Momordica charantia]	[more]

BLAST of Clc09G01540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C035	1.3e-42	40.06	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
Q9XF63	1.7e-42	38.68	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q8L9T5	4.6e-24	33.57	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
O22255	1.3e-23	39.47	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	1.3e-21	34.15	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of Clc09G01540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6T2	9.1e-116	82.97	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G447970 PE...	[more]
A0A5D3BW46	1.7e-114	82.25	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CH08	1.7e-114	82.25	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103500641 PE=3 ...	[more]
A0A6J1D188	5.2e-95	70.07	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101609...	[more]
A0A6J1HKG4	2.0e-94	70.53	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464366...	[more]

BLAST of Clc09G01540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53820.1	9.2e-44	40.06	RING/U-box superfamily protein	[more]
AT1G72310.1	1.2e-43	38.68	RING/U-box superfamily protein	[more]
AT3G16720.1	3.3e-25	33.57	TOXICOS EN LEVADURA 2	[more]
AT2G47560.1	9.5e-25	39.47	RING/U-box superfamily protein	[more]
AT4G15975.1	1.1e-23	41.18	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 100..141 e-value: 2.6E-8 score: 43.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 99..142 e-value: 8.5E-14 score: 51.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 100..142 score: 12.40076
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 77..151 e-value: 3.0E-20 score: 73.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..276
None	No IPR available	PANTHER	PTHR45676:SF132	RING-H2 FINGER PROTEIN ATL3	coord: 5..268
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 99..142 e-value: 4.60084E-18 score: 73.8835
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 80..148
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 5..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G01540.1	Clc09G01540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane