Clc09G01470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G01470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 1220808 .. 1221856 (-)
RNA-Seq Expression	Clc09G01470
Synteny	Clc09G01470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAAAAAAAAGCATTAAATATATGAAACTTAAAGGGGGAAATAGCATAAAACAAATTGGAAAGAGCCCCCACCAAGAAACAGCTGCAAATTCTTGTTCATTATTCCATCTTCTTCTTGTTATTGTAGTCTCAAACTGATGGCAATAACTTGTTCTTGCTCTTCTTCTTCTCTCAATGTCTCTCTTCTGAAATCTGGTCTTTCAGTTTCAGTTAAGCCTATTAGTAGAATTTGGATGCTTAAACCTTCAAGATTTCCTCTCAAGAACTCACTCCCACTTCAGATCAGATCTTCCATTAAGAACAAGGTCAACATCTTCTCCTTTCATTTTCTATTTATGTTCTTCATCATCTTTTTTTGATTCCTCACCTGAAGTAAATAATCGTTTCAATGGAAACTTATACTCTTCCTCTACTAGAGATTAACGGTTGATACACGATCCAAACTATTATCTTTACTGTTAACAAATTTGCTTTTATGAATTAGAAATGTCGATCAGTACCTGATTACCAAGTTTTACGAAAAACTAACAGGTTTTCGAGGATCAATTGGAAGGGGTGATTTGTTACGCAGACGAAAACGGAGAGATCATCTGCGAAGGATACGATGAGGGCCCTCGCATTCACCAAAACCTTCCCGAAAAAGGGAACCATCAAAGGTAAATGAATCACTATTCTAAATCTACCTCAAAGTTCTGAAAAAGAAAAAAAAGAGAGACAGATATTGATATGTGTTCTTGTTTTTTGGCCACAATTTAGAGAGACAGAGATTATTGATCTCCTACTAAAACAAAGTTGGATTCATCTAGGAAAAAGTGGTGGGGGAGAGCTAAGCCATGCTGAAAAAGGTGTAGCTGTTAAAAAAGACTTGAATGTGAATGGCTTCAACTCCTTGTGCTAAATCCTAATATGGTTAAACTCGAATGTATGTACTTGCTATCTCCATTGTAAACAGACATTGTTTTTATTTGAGTAATTTTTAGTAGAACTACTTTCTTCTGTATCTGAATCACTTAATCAAATTCACTGTCCCTAAATTGTATAGT

mRNA sequence

AAAAAAGAAAAAAAAAGCATTAAATATATGAAACTTAAAGGGGGAAATAGCATAAAACAAATTGGAAAGAGCCCCCACCAAGAAACAGCTGCAAATTCTTGTTCATTATTCCATCTTCTTCTTGTTATTGTAGTCTCAAACTGATGGCAATAACTTGTTCTTGCTCTTCTTCTTCTCTCAATGTCTCTCTTCTGAAATCTGGTCTTTCAGTTTCAGTTAAGCCTATTAGTAGAATTTGGATGCTTAAACCTTCAAGATTTCCTCTCAAGAACTCACTCCCACTTCAGATCAGATCTTCCATTAAGAACAAGGTTTTCGAGGATCAATTGGAAGGGGTGATTTGTTACGCAGACGAAAACGGAGAGATCATCTGCGAAGGATACGATGAGGGCCCTCGCATTCACCAAAACCTTCCCGAAAAAGGGAACCATCAAAGAGAGACAGAGATTATTGATCTCCTACTAAAACAAAGTTGGATTCATCTAGGAAAAAGTGGTGGGGGAGAGCTAAGCCATGCTGAAAAAGGTGTAGCTGTTAAAAAAGACTTGAATGTGAATGGCTTCAACTCCTTGTGCTAAATCCTAATATGGTTAAACTCGAATGTATGTACTTGCTATCTCCATTGTAAACAGACATTGTTTTTATTTGAGTAATTTTTAGTAGAACTACTTTCTTCTGTATCTGAATCACTTAATCAAATTCACTGTCCCTAAATTGTATAGT

Coding sequence (CDS)

ATGGCAATAACTTGTTCTTGCTCTTCTTCTTCTCTCAATGTCTCTCTTCTGAAATCTGGTCTTTCAGTTTCAGTTAAGCCTATTAGTAGAATTTGGATGCTTAAACCTTCAAGATTTCCTCTCAAGAACTCACTCCCACTTCAGATCAGATCTTCCATTAAGAACAAGGTTTTCGAGGATCAATTGGAAGGGGTGATTTGTTACGCAGACGAAAACGGAGAGATCATCTGCGAAGGATACGATGAGGGCCCTCGCATTCACCAAAACCTTCCCGAAAAAGGGAACCATCAAAGAGAGACAGAGATTATTGATCTCCTACTAAAACAAAGTTGGATTCATCTAGGAAAAAGTGGTGGGGGAGAGCTAAGCCATGCTGAAAAAGGTGTAGCTGTTAAAAAAGACTTGAATGTGAATGGCTTCAACTCCTTGTGCTAA

Protein sequence

MAITCSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFEDQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGGGELSHAEKGVAVKKDLNVNGFNSLC

Homology

[Close]

BLAST of Clc09G01470 vs. NCBI nr
Match: XP_038897486.1 (uncharacterized protein LOC120085537 [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 134/145 (92.41%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MAIT-CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFE 60
           MAIT C CSSSS NVSLLKSGLSVSVKPISRIWML+P+RFPLKNSLPLQIRSSIKNKVFE
Sbjct: 1   MAITSCCCSSSSFNVSLLKSGLSVSVKPISRIWMLQPTRFPLKNSLPLQIRSSIKNKVFE 60

Query: 61  DQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGG 120
           DQ EGVICYADENGEIICEGYDEGPRIHQ+LPEKGNHQRETEIID LLKQSWIHLGK+GG
Sbjct: 61  DQSEGVICYADENGEIICEGYDEGPRIHQSLPEKGNHQRETEIID-LLKQSWIHLGKAGG 120

Query: 121 GELSHAEKGVAVKKDLNVNGFNSLC 145
           GELSHAEKGVAVKKD N NGFNSLC
Sbjct: 121 GELSHAEKGVAVKKDFNANGFNSLC 144

[Close]

BLAST of Clc09G01470 vs. NCBI nr
Match: XP_023548903.1 (uncharacterized protein LOC111807416 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAIT-CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFE 60
           MA+T C CSSSS NVSLLKSGLSVS KPISRIWMLKP++FPLK SLPLQIRSSIKNKVFE
Sbjct: 1   MALTCCCCSSSSFNVSLLKSGLSVSAKPISRIWMLKPAKFPLKKSLPLQIRSSIKNKVFE 60

Query: 61  DQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGG 120
           DQ EGVICY DENGEI+CEGYDEGPR H NLPEKGNHQRETEIIDLLLKQSWIHLG+ GG
Sbjct: 61  DQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRETEIIDLLLKQSWIHLGR-GG 120

Query: 121 GELSHAEKGVAVKKDLNVNGFNSLC 145
           GELS A+KGVAV+ D NVNGFNS C
Sbjct: 121 GELSQADKGVAVQNDSNVNGFNSFC 144

[Close]

BLAST of Clc09G01470 vs. NCBI nr
Match: KAG6575412.1 (hypothetical protein SDJN03_26051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MAIT-CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFE 60
           MA+T C C SSS NVSLLKSGLSVS KPISRIWMLKP++FPLK SLPLQIRSSIKNKVFE
Sbjct: 1   MALTCCCCCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSLPLQIRSSIKNKVFE 60

Query: 61  DQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGG 120
           DQ EGVICY DENGEI+CEGYDEGPR H NLPEKGNHQRETEIIDLLLKQSWIHLG+ GG
Sbjct: 61  DQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRETEIIDLLLKQSWIHLGR-GG 120

Query: 121 GELSHAEKGVAVKKDLNVNGFNSLC 145
           GELS A+KGVAV+ D NVNGFNS C
Sbjct: 121 GELSQADKGVAVQNDSNVNGFNSFC 144

[Close]

BLAST of Clc09G01470 vs. NCBI nr
Match: XP_022953822.1 (uncharacterized protein LOC111456239 isoform X1 [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MAIT-CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFE 60
           MA+T C C SSS NVSLLKSGLSVS KPISRIWMLKP++FPLK SLPLQIRSSIKNKVFE
Sbjct: 1   MALTCCCCCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSLPLQIRSSIKNKVFE 60

Query: 61  DQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGG 120
           DQ EGVICY DENGEI+CEGYDEGPR H NLPEKGNHQRETEIIDLLLKQSWIHLGK GG
Sbjct: 61  DQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRETEIIDLLLKQSWIHLGK-GG 120

Query: 121 GELSHAEKGVAVKKDLNVNGFNSLC 145
           GELS A+KGVAV+ D N NGFNS C
Sbjct: 121 GELSQADKGVAVQNDSNANGFNSFC 144

[Close]

BLAST of Clc09G01470 vs. NCBI nr
Match: XP_008462240.1 (PREDICTED: uncharacterized protein LOC103500644 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.0e-61
Identity = 122/146 (83.56%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MAITCSCSSSS--LNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVF 60
           MA+T S SSSS  LN S LK+GLSVS KP++RIWMLKP+RFPLKNSLPL+IRSSIKNKVF
Sbjct: 1   MALTSSSSSSSSPLNFSHLKTGLSVSFKPVTRIWMLKPTRFPLKNSLPLRIRSSIKNKVF 60

Query: 61  EDQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSG 120
           EDQ EGVICYADENGEIICEGYDEGPR HQN+ EKGNHQRETEIIDLLLKQSWI LGK  
Sbjct: 61  EDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNHQRETEIIDLLLKQSWIQLGKGV 120

Query: 121 GGELSHAEKGVAVKKDLNVNGFNSLC 145
           GGE SHAEKGVAV+KDLN+NGFNS C
Sbjct: 121 GGERSHAEKGVAVRKDLNINGFNSFC 146

[Close]

BLAST of Clc09G01470 vs. ExPASy TrEMBL
Match: A0A6J1GPC1 (uncharacterized protein LOC111456239 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456239 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.7e-62
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MAIT-CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFE 60
           MA+T C C SSS NVSLLKSGLSVS KPISRIWMLKP++FPLK SLPLQIRSSIKNKVFE
Sbjct: 1   MALTCCCCCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSLPLQIRSSIKNKVFE 60

Query: 61  DQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGG 120
           DQ EGVICY DENGEI+CEGYDEGPR H NLPEKGNHQRETEIIDLLLKQSWIHLGK GG
Sbjct: 61  DQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRETEIIDLLLKQSWIHLGK-GG 120

Query: 121 GELSHAEKGVAVKKDLNVNGFNSLC 145
           GELS A+KGVAV+ D N NGFNS C
Sbjct: 121 GELSQADKGVAVQNDSNANGFNSFC 144

[Close]

BLAST of Clc09G01470 vs. ExPASy TrEMBL
Match: A0A1S3CGF5 (uncharacterized protein LOC103500644 OS=Cucumis melo OX=3656 GN=LOC103500644 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 122/146 (83.56%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MAITCSCSSSS--LNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVF 60
           MA+T S SSSS  LN S LK+GLSVS KP++RIWMLKP+RFPLKNSLPL+IRSSIKNKVF
Sbjct: 1   MALTSSSSSSSSPLNFSHLKTGLSVSFKPVTRIWMLKPTRFPLKNSLPLRIRSSIKNKVF 60

Query: 61  EDQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSG 120
           EDQ EGVICYADENGEIICEGYDEGPR HQN+ EKGNHQRETEIIDLLLKQSWI LGK  
Sbjct: 61  EDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNHQRETEIIDLLLKQSWIQLGKGV 120

Query: 121 GGELSHAEKGVAVKKDLNVNGFNSLC 145
           GGE SHAEKGVAV+KDLN+NGFNS C
Sbjct: 121 GGERSHAEKGVAVRKDLNINGFNSFC 146

[Close]

BLAST of Clc09G01470 vs. ExPASy TrEMBL
Match: A0A6J1JZ71 (uncharacterized protein LOC111488739 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488739 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.4e-61
Identity = 122/144 (84.72%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MAITCSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFED 60
           MA+T  C SSS NVSLLKSGLSVS KPISRIWMLKP++FPLK SLPLQIRSSIKNKVFED
Sbjct: 1   MALT--CCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSLPLQIRSSIKNKVFED 60

Query: 61  QLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGGG 120
           Q EGVICY DENGEI+CEGYDEGPR   NLPEKGNHQRETEIIDLLLKQSWIHLG+ GGG
Sbjct: 61  QSEGVICYTDENGEIVCEGYDEGPRFQPNLPEKGNHQRETEIIDLLLKQSWIHLGR-GGG 120

Query: 121 ELSHAEKGVAVKKDLNVNGFNSLC 145
           ELS A+KGVAV+KD NVNGFNS C
Sbjct: 121 ELSQADKGVAVQKDSNVNGFNSFC 141

[Close]

BLAST of Clc09G01470 vs. ExPASy TrEMBL
Match: A0A0A0K9A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448010 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 116/144 (80.56%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MAITCSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSRFPLKNSLPLQIRSSIKNKVFED 60
           MA+T S SSSSLN SLLK+GLSVS KPI+RIWM+KP+R PLKNS  L+IRSS+KNKVFED
Sbjct: 1   MALTSSSSSSSLNFSLLKTGLSVSFKPITRIWMVKPTRLPLKNSFSLRIRSSMKNKVFED 60

Query: 61  QLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGKSGGG 120
           Q EGVICYADENGEIICEGYDEGPR HQN+ EKGN+QRE EIIDLLLKQ+WI LGK  GG
Sbjct: 61  QSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNNQREAEIIDLLLKQTWIQLGKGVGG 120

Query: 121 ELSHAEKGVAVKKDLNVNGFNSLC 145
           ELSHAEK VAV+KDLN+NGFNS C
Sbjct: 121 ELSHAEKEVAVRKDLNINGFNSFC 144

[Close]

BLAST of Clc09G01470 vs. ExPASy TrEMBL
Match: A0A6J1D7W7 (uncharacterized protein LOC111018083 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018083 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 117/146 (80.14%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MAIT---CSCSSSSLNVSLLKSGLSVSVKPISRIWMLKPSR-FPLKNSLPLQIRSSIKNK 60
           MA+T    S SSSS NV LLKSGL  S+KP+SR+WML+P++ FPLK SLPLQIRSSIKNK
Sbjct: 1   MALTSSSSSSSSSSFNVCLLKSGL--SIKPMSRVWMLRPTKFFPLKKSLPLQIRSSIKNK 60

Query: 61  VFEDQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEIIDLLLKQSWIHLGK 120
           VFEDQ EGVICYADENGEIICEGYDEGPR HQN  EK NHQRETEIIDLLLKQSWIHLGK
Sbjct: 61  VFEDQSEGVICYADENGEIICEGYDEGPRFHQNPSEKANHQRETEIIDLLLKQSWIHLGK 120

Query: 121 SGGGELSHAEKGVAVKKDLNVNGFNS 143
            GGGELS AEKG  +KKD NVNGFNS
Sbjct: 121 -GGGELSRAEKGAPLKKDFNVNGFNS 143

[Close]

BLAST of Clc09G01470 vs. TAIR 10
Match: AT3G14280.1 (unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-16
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 44  SLPLQIRSSIKNKVFEDQLEGVICYADENGEIICEGYDEGPRIHQNLPEKGNHQRETEII 103
           S P  IR S KN VFED ++G+ICY D+NGE+ICEGYDEGPR     P   ++ RE EI+
Sbjct: 43  SQPQPIRYSTKNIVFEDPIQGIICYTDDNGEVICEGYDEGPRCPTQSPMVASYSREVEIL 102

Query: 104 DLL 107
           DLL
Sbjct: 103 DLL 105

The following BLAST results are available for this feature:

BLAST of Clc09G01470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897486.1	2.9e-67	92.41	uncharacterized protein LOC120085537 [Benincasa hispida]	[more]
XP_023548903.1	2.8e-62	85.52	uncharacterized protein LOC111807416 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6575412.1	1.1e-61	84.83	hypothetical protein SDJN03_26051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953822.1	1.4e-61	84.83	uncharacterized protein LOC111456239 isoform X1 [Cucurbita moschata]	[more]
XP_008462240.1	9.0e-61	83.56	PREDICTED: uncharacterized protein LOC103500644 [Cucumis melo]	[more]

BLAST of Clc09G01470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G01470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPC1	6.7e-62	84.83	uncharacterized protein LOC111456239 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CGF5	4.4e-61	83.56	uncharacterized protein LOC103500644 OS=Cucumis melo OX=3656 GN=LOC103500644 PE=...	[more]
A0A6J1JZ71	7.4e-61	84.72	uncharacterized protein LOC111488739 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0K9A8	9.1e-59	80.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448010 PE=4 SV=1	[more]
A0A6J1D7W7	5.2e-54	80.14	uncharacterized protein LOC111018083 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Clc09G01470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14280.1	2.5e-16	58.73	unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34206	OS06G0193300 PROTEIN	coord: 1..137
None	No IPR available	PANTHER	PTHR34206:SF1	OS06G0193300 PROTEIN	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G01470.1	Clc09G01470.1	mRNA