Clc09G01430 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G01430
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Late embryogenesis abundant protein
Location	ClcChr09: 1195629 .. 1196573 (+)
RNA-Seq Expression	Clc09G01430
Synteny	Clc09G01430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAACTAAAAATGCACTCTCCTTCTTCAGCACTTCAACTTCTATGTCTCCCTTCCAAATTATAAATATTTGTGTGTGATCTTTCCATTCAAAATCAAACATAGAAAAGGAAAACTTCCTCTTTCCCTCTCCATATTCTTCTTCTTTAAGCATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGTCTATTCTTCTCGTGCTGGTTTTATATATTTCTCGTTTCCATTCTTCGTGCATGTTTCTTTCGCGTTCTTGTCTAATTTAGCAATGTAATAGCAGGCGACTGAGCTCTTCGGTTGCATCCGAGCAACTTAACACACAAACAACTGCATCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGAGAGAAACTGCTACCTAAACCTAAACCGAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGCGCAAGAACAAAATTTCCATCTTTATCCATGCTACACTAAATAACACCTACTGCAAAAACTATTCTGCACTACTTTTTCTCTTTTTCTCTCTCTCTCTAATCTGTCACTTCTATCAGTTTCAAGTCTCATATGAATCCTTTCAAGTTAAATGGTGATGATTTTGACGGATGAAAGAAGGGAATCCGAATCTCATCAAGTTTATCATGAAAGCAAATCGCCAGATCACAGGAGTTGCAACAAGTCAAGAATGATGAGTTGGACTATGCAAATTAGTAAATACGTACAATTATCAACTCTAATATGGACAAACATCTCACTTGATATTTATTCCTAAGGTTTATTTTATTTTATGTTGATTACTTTTCAGAATGGACCATTCCA

mRNA sequence

TTCAAACTAAAAATGCACTCTCCTTCTTCAGCACTTCAACTTCTATGTCTCCCTTCCAAATTATAAATATTTGTGTGTGATCTTTCCATTCAAAATCAAACATAGAAAAGGAAAACTTCCTCTTTCCCTCTCCATATTCTTCTTCTTTAAGCATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGCGACTGAGCTCTTCGGTTGCATCCGAGCAACTTAACACACAAACAACTGCATCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGAGAGAAACTGCTACCTAAACCTAAACCGAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGCGCAAGAACAAAATTTCCATCTTTATCCATGCTACACTAAATAACACCTACTGCAAAAACTATTCTGCACTACTTTTTCTCTTTTTCTCTCTCTCTCTAATCTGTCACTTCTATCAGTTTCAAGTCTCATATGAATCCTTTCAAGTTAAATGGTGATGATTTTGACGGATGAAAGAAGGGAATCCGAATCTCATCAAGTTTATCATGAAAGCAAATCGCCAGATCACAGGAGTTGCAACAAGTCAAGAATGATGAGTTGGACTATGCAAATTAGTAAATACGTACAATTATCAACTCTAATATGGACAAACATCTCACTTGATATTTATTCCTAAGGTTTATTTTATTTTATGTTGATTACTTTTCAGAATGGACCATTCCA

Coding sequence (CDS)

ATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGCGACTGAGCTCTTCGGTTGCATCCGAGCAACTTAACACACAAACAACTGCATCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGAGAGAAACTGCTACCTAAACCTAAACCGAAGAAGCTGCTCTAA

Protein sequence

MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQEIDVVELREKLLPKPKPKKLL

Homology

[Close]

BLAST of Clc09G01430 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 5.1e-28
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSSVASEQL  QTTASMVVRKVKAAVET GYDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          E+DVVELREKLL KPK
Sbjct: 61 EMDVVELREKLLAKPK 76

[Close]

BLAST of Clc09G01430 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSS+ASEQL  QTTASMVVRKVKAAVETS YDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

[Close]

BLAST of Clc09G01430 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDN-EAVEQKQTFWM 60
          MAK+TGNG+YFIRRLSS VASEQL  + TA M V+ V A VETSG D+ +AVEQK  FWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          KDPKSGNWIPE+HF EIDVVELREKLL K K
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTK 91

[Close]

BLAST of Clc09G01430 vs. NCBI nr
Match: XP_022843012.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sylvestris] >CAA3012453.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAK + N L  + R  S+VA+E   TQTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLSRRESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPK 89
          DPK+GNWIPE+HF++IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 77

[Close]

BLAST of Clc09G01430 vs. NCBI nr
Match: CAA3012452.1 (SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAK + N L  +RR  S+VA+E   TQTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLRR-ESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPK 89
          DPK+GNWIPE+HF++IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 76

[Close]

BLAST of Clc09G01430 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.5e-36
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAKVTGN LYFIRR+SSSVASEQL  QTTASMVVRKVKAAVET GYDNE VEQK+TFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          DPKSGNWIPE+HF+E+DVVELREKLL KPK
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPK 90

[Close]

BLAST of Clc09G01430 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.5e-28
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSS+ASEQL  QTTASMVVRKVKAAVETS YDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

[Close]

BLAST of Clc09G01430 vs. ExPASy TrEMBL
Match: A0A6A1VZA4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAKV  N L  + R S SVA   L        V    + A E+SG   EA EQK+ FWMK
Sbjct: 1  MAKVFINTLLHLSRRSFSVA--VLENIRRVQPVTTATRKAAESSG--AEATEQKENFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          D KSGNWIPESHF EIDVV+LREKLLP+ K
Sbjct: 61 DLKSGNWIPESHFGEIDVVDLREKLLPRQK 86

[Close]

BLAST of Clc09G01430 vs. ExPASy TrEMBL
Match: A0A7N2LLH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 50/90 (55.56%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MA+V  + L  +RR + SVA E    Q     V+  VK A E+ G    A EQK+ FWM+
Sbjct: 1  MARVPIDNLLLLRR-AYSVAVENARVQP----VMTVVKKAAESGG--TVAEEQKEIFWMR 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          DPKSGNWIPESHF EI+V ELREKLLPK K
Sbjct: 61 DPKSGNWIPESHFGEINVAELREKLLPKKK 83

[Close]

BLAST of Clc09G01430 vs. ExPASy TrEMBL
Match: A0A2N9EY27 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7635 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRR-LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWM 60
          MAKV  N L  +RR  S+SV + ++        VV  ++   E+SG    A EQK+TFWM
Sbjct: 1  MAKVPNNTLLLLRRSYSASVENARVKP------VVTVMRKGAESSG--TVAAEQKETFWM 60

Query: 61 KDPKSGNWIPESHFQEIDVVELREKLLPK 89
          +DPKSGNWIPESHF EIDV ELREK L K
Sbjct: 61 RDPKSGNWIPESHFGEIDVAELREKFLSK 81

The following BLAST results are available for this feature:

BLAST of Clc09G01430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646489.1	5.1e-28	86.84	hypothetical protein Csa_015817 [Cucumis sativus]	[more]
KAA0059359.1	1.1e-27	86.84	putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1...	[more]
KAG6575415.1	2.1e-26	74.73	hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022843012.1	2.7e-13	51.14	protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sy...	[more]
CAA3012452.1	7.9e-13	52.27	SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea...	[more]

BLAST of Clc09G01430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G01430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L4	5.5e-36	87.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1	[more]
A0A5D3BWU2	5.5e-28	86.84	Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6A1VZA4	8.5e-13	56.67	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1	[more]
A0A7N2LLH6	1.4e-12	55.56	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9EY27	1.9e-12	53.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7635 PE=4 SV=1	[more]

BLAST of Clc09G01430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 19..86 e-value: 3.3E-13 score: 50.2
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PANTHER	PTHR33509	LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATED	coord: 9..89
None	No IPR available	PANTHER	PTHR33509:SF21	OS02G0564600 PROTEIN	coord: 9..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G01430.1	Clc09G01430.1	mRNA