Clc09G00340 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G00340
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cryptdin protein-related
Location	ClcChr09: 297097 .. 298227 (-)
RNA-Seq Expression	Clc09G00340
Synteny	Clc09G00340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATTATAAATACCAAAATACGTACAGCTTCAAATCTTCATCCATCCAGAATTAAGTTTTATCAATACCCCAATCACCAATTTCTCTCCAAATTCTAGCAATGGCCACACCTAAATTCTCTCTGAGCTCCATTTTGATGACGGTTCTCGTCTTCACCATGCTCCTCTCTCCCATGACGATTCCCACCGCCAACGCTACTCGTGTGCTTTTGCAACAAGGTAATTAGCATTTGTTAAGGCTTCATTTAATAATTATTTTTTATTTTTTTCAAAACAAGTATTTAGTTTTTCAAAAAAAAAAATTTAATTTGACATAGAATTCAAATATTTACTTAAAAGAAAAAGTTATGATTAAAAATGTGAGAAAATAAAAAGAAAAATGAAATGATTGTTTATATAAAAGAAAGAACAAGAAATTTCTAAAAAAAAAGATACATTTAACTGTGTTTATTAATTATGTGGTTGAAAATTAGCATCAGACCCAAAATTTTTGACTATCACATAAAACAAAAACCATTCTAGTCTTCATAAATTCATAGTCATCCGACATAATTCAATCAATTGGTGAAGATGTTTTATTTTCGACTAAAAAGTTAAAAATAAATAAGTGTTGTTGAAAAAATAATTGTTAGATAATTGAAAAGCTTTTATTGGTTTAGGATAAATTTCTATTTTATTATTAACTTGAATGTGTCTGTTTTGAAATTCATAGCAATTTGAGGTTTGATATTTAAAGTTTTGAGTTTGGTTGATGCAGTTAATAGGGCACCGATATGCCCAGCCTGCGTGTGCTGCGAGCCACCACCGGCGGGATCCTGTTGCCGCTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGAAAAAACCTTTAATTTGCTGCTCTCTCCATGGGAGTACACATTAAAGGATTTGAAGATGCTTTGAGAATAAGGAGAAGACTCTCCAGTGTAGATTTGTTTTAATTTGGTTATTGGTGTGATTAATATAATGTTGTTACATGATGATGTTAATGAACCCACTTTCATATTCAAAGTGTTTGTGAATTCTTTTGATCTTTTGGGTATTATATAATTATATACACTTTGGTATACAGAAAAATTTCAGTATTATTCGATCT

mRNA sequence

CTTCATTATAAATACCAAAATACGTACAGCTTCAAATCTTCATCCATCCAGAATTAAGTTTTATCAATACCCCAATCACCAATTTCTCTCCAAATTCTAGCAATGGCCACACCTAAATTCTCTCTGAGCTCCATTTTGATGACGGTTCTCGTCTTCACCATGCTCCTCTCTCCCATGACGATTCCCACCGCCAACGCTACTCGTGTGCTTTTGCAACAAGTTAATAGGGCACCGATATGCCCAGCCTGCGTGTGCTGCGAGCCACCACCGGCGGGATCCTGTTGCCGCTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGAAAAAACCTTTAATTTGCTGCTCTCTCCATGGGAGTACACATTAAAGGATTTGAAGATGCTTTGAGAATAAGGAGAAGACTCTCCAGTGTAGATTTGTTTTAATTTGGTTATTGGTGTGATTAATATAATGTTGTTACATGATGATGTTAATGAACCCACTTTCATATTCAAAGTGTTTGTGAATTCTTTTGATCTTTTGGGTATTATATAATTATATACACTTTGGTATACAGAAAAATTTCAGTATTATTCGATCT

Coding sequence (CDS)

ATGGCCACACCTAAATTCTCTCTGAGCTCCATTTTGATGACGGTTCTCGTCTTCACCATGCTCCTCTCTCCCATGACGATTCCCACCGCCAACGCTACTCGTGTGCTTTTGCAACAAGTTAATAGGGCACCGATATGCCCAGCCTGCGTGTGCTGCGAGCCACCACCGGCGGGATCCTGTTGCCGCTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGA

Protein sequence

MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSCCRCCATPIQTSSQNGSP

Homology

[Close]

BLAST of Clc09G00340 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA+ KFSL+S+LMTVLVFTM+LSPMTIPTANATRVLLQQ+NR PICPACVCCEP PAGSC
Sbjct: 1  MASAKFSLTSVLMTVLVFTMVLSPMTIPTANATRVLLQQINRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Clc09G00340 vs. NCBI nr
Match: KGN45568.1 (hypothetical protein Csa_016454 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA PK  L+S+ +TVLVF M+LSPMT PTA+ATRVLLQQ+NR PICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Clc09G00340 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.0e-26
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA PK  ++S+ MTVLVF MLLSPMTIPTA ATRVLLQQ+NR PICPACVCCEP PAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Clc09G00340 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 3.6e-24
Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 3  TPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSCCR 62
          T  FS  SI +TVLVF M+LSPMTI TANATR LLQQVNR PICPACVCCEP PAGSCCR
Sbjct: 4  THNFSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQNGSP
Sbjct: 64 CCATPIQTSSQNGSP 78

[Close]

BLAST of Clc09G00340 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 3  TPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSCCR 62
          T KF+ +SI +TVLVF M+LSP TI TANATRVLLQQVNR PICPACVCCEP PAGSCCR
Sbjct: 4  THKFTPTSIFVTVLVFAMVLSPTTISTANATRVLLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQ+GSP
Sbjct: 64 CCATPIQTSSQSGSP 78

[Close]

BLAST of Clc09G00340 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA PK  L+S+ +TVLVF M+LSPMT PTA+ATRVLLQQ+NR PICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Clc09G00340 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA PK  ++S+ MTVLVF MLLSPMTIPTA ATRVLLQQ+NR PICPACVCCEP PAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Clc09G00340 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 3  TPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSCCR 62
          T  FS  SI +TVLVF M+LSPMTI TANATR LLQQVNR PICPACVCCEP PAGSCCR
Sbjct: 4  THNFSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQNGSP
Sbjct: 64 CCATPIQTSSQNGSP 78

[Close]

BLAST of Clc09G00340 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 3  TPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSCCR 62
          T KF+ +SI +TVLVF M+LSP TI T NATRVLLQQVNR PICPACVCCEP PAGSCCR
Sbjct: 4  THKFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQ+GSP
Sbjct: 64 CCATPIQTSSQSGSP 78

[Close]

BLAST of Clc09G00340 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNRAPICPACVCCEPPPAGSC 60
          MA PKFSLSSI +TVLVFTM+LSPM I TA ATR+ L QV R PICPACVCC+PPP GSC
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSC 64

Query: 61 CR-CCATPIQTSSQNGSP 78
          C+ CCATPI+TSSQNGSP
Sbjct: 65 CKQCCATPIETSSQNGSP 80

[Close]

BLAST of Clc09G00340 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQV-NRAPICPACVCCEPPPAGS 60
          MA+     S  L   ++F +L+ P++   +NATR+    + +R PICPACVCCEP P GS
Sbjct: 1  MASFHSGKSIFLKLFVLFLLLVLPLS--QSNATRIPRAPISSRRPICPACVCCEPAPLGS 60

Query: 61 CCRCCATPIQTSSQNGS 77
          CCRCCA+PI T + + S
Sbjct: 61 CCRCCASPIVTQTHHHS 75

[Close]

BLAST of Clc09G00340 vs. TAIR 10
Match: AT1G51915.1 (cryptdin protein-related )

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1  MATPKFSLSSILMTVLVFTMLLSPMTIPTANATRVLLQQVNR--APICPACVCCEPPPAG 60
          MAT +F  S++L++VLV  ++LSP  I    ATR  L    R    +CP+CVCC P P G
Sbjct: 1  MATERF--STMLISVLVLALVLSP--ILPCQATRAHLDAETRMLRRVCPSCVCCAPAPRG 60

Query: 61 SCCRC 64
          +CC C
Sbjct: 61 ACCPC 61

The following BLAST results are available for this feature:

BLAST of Clc09G00340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896231.1	1.1e-28	88.31	uncharacterized protein LOC120084509 [Benincasa hispida]	[more]
KGN45568.1	2.3e-26	81.82	hypothetical protein Csa_016454 [Cucumis sativus]	[more]
KAA0059464.1	5.0e-26	83.12	hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK038...	[more]
XP_022992462.1	3.6e-24	84.00	uncharacterized protein LOC111488758 [Cucurbita maxima]	[more]
KAG6575497.1	6.1e-24	82.67	hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc09G00340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G00340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y9	1.1e-26	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1	[more]
A0A5A7UWJ7	2.4e-26	83.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JPW7	1.7e-24	84.00	uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758...	[more]
A0A6J1GR88	8.6e-24	81.33	uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A6J1CSH3	4.4e-20	78.21	uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Clc09G00340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51920.1	7.0e-10	46.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51915.1	4.0e-05	46.15	cryptdin protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36328:SF1	TRANSMEMBRANE PROTEIN	coord: 7..77
None	No IPR available	PANTHER	PTHR36328	TRANSMEMBRANE PROTEIN	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G00340.1	Clc09G00340.1	mRNA