Clc09G00060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G00060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mannose-6-phosphate isomerase
Location	ClcChr09: 63567 .. 65362 (-)
RNA-Seq Expression	Clc09G00060
Synteny	Clc09G00060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAGAGGCTAAATTTAGTGCAGTAGCAAATATTTAATGGGCTGCTGCTGCTGCTGTTGCAAAGTTTCTAGCTTTTCATCTTTGGCTTATAGTTATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGTCAGCCAATAAACCATTACAATATAACCCACTATTATCTTTTATTTTTATTTTTTAATAAATATATAATTTAATTTTTTTGTTTTTGGTTTTTTGGGTTTTGGTTCGGCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATGTACGTGTTTCTTTTGCTAACCCATATCTGATATCCTACTATTTTTCTAAATTATGACATATCTAATATCCTACTATTTTATTAATTATTAATATTTTTCCTAATTATGACATGTCTGAGAGAATTATTTTGTAATATTCAAAAGAATCATAAGTAATCATAGGTTGTAGAGTAATTTCAACATGATAAAAATGATCTTAATAATTTGAAAATCACTGTTAAAGATATATACCATGATTAATTACTTGGTGAAAGATTTTTTTTTTCTCCCTTTAACTAGGAATCATTTGAGAATATAGTTATATTTTTGAGAGGGGCTCTTTGGTACTTCTATGACCCTAAAGTTGTAAAACTAAACCGTTTAAATTATTGGATTAGTTATTGATCTTTCAAAAGCGTTTAATATGTTTTTGAACTTTCAATCTTTTGTTTGCTAGGTCAATCAATTTATTAAAAATGTCCAATTAGTCCATAGAATTTGAATTTTGTGTATAATAAGTCATAACATATTAATTTTTTTTTAATATTACTGGATCTATTTAATATAAGTTAAATTTAAAATTAATGTATGATAGAATTCTAAACGTTCAATTATGTGTCTGGTAAATCTGTTAGATTTAAAAAAAGGTCAAAAGTCTAATTAGACAAATTAAAATTGAAAAGTCCGGTCCTAGAACAAAACAAAAAGTTTGAGAACCAAATAGTCCTTTAAAAAAATTTAGGACTTTATTGGACACAACTTAGAAAATTCAAGAACTAAAATTGTAATTGAATCAATTATTAAAATAATTTATTATTCAACCTTTATTTATTATTATTTGATAGTATGTGGGGTGGGAGAATCTTCTAACAATTAAACTATCATGTATTAACATAAATACTCGTTTTAATTATGAACAAGTATTTATGTAGCTTTCTCGGTTATGTTTTTCCATTCTAATTAATATGAGATTTTAGATCGTGGAAAGATTCAAACCGATCAACTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGAAGCTTTTACCCTTCTTTAGATCTCAAGTAGTTTGTAGAGTTTAAAGACAAATACTTTTGTTTTTTTGAAGTATTTGGACTATCAATTTATGTAAGTTGTAATGGATAATTCTCAGTTTATTAAACTATTACTGATGACACAAACAATGCCATGTGTAACCAAAATGAGTTTCCATGATGCAAGAGCTTAGTTCAAATTAAATGGTTTTAGAGAAAAGTGTCATAAAATTAAAAAGTGTGGTTTTTAATAGAAAAAAAAGTAAAATTTTTATATATTTAAGACCTAATTTGG

mRNA sequence

CGCAGAGGCTAAATTTAGTGCAGTAGCAAATATTTAATGGGCTGCTGCTGCTGCTGTTGCAAAGTTTCTAGCTTTTCATCTTTGGCTTATAGTTATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATATCGTGGAAAGATTCAAACCGATCAACTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGAAGCTTTTACCCTTCTTTAGATCTCAAGTAGTTTGTAGAGTTTAAAGACAAATACTTTTGTTTTTTTGAAGTATTTGGACTATCAATTTATGTAAGTTGTAATGGATAATTCTCAGTTTATTAAACTATTACTGATGACACAAACAATGCCATGTGTAACCAAAATGAGTTTCCATGATGCAAGAGCTTAGTTCAAATTAAATGGTTTTAGAGAAAAGTGTCATAAAATTAAAAAGTGTGGTTTTTAATAGAAAAAAAAGTAAAATTTTTATATATTTAAGACCTAATTTGG

Coding sequence (CDS)

ATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATATCGTGGAAAGATTCAAACCGATCAACTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

Protein sequence

MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFERRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF

Homology

[Close]

BLAST of Clc09G00060 vs. NCBI nr
Match: XP_038898732.1 (uncharacterized protein LOC120086256 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 96/113 (84.96%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSE S+V IDIVERFK +NYM E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKTMNYMLE 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF 114
             G+ QP LPPP P  PSLGDIKEERGRCQC Y+S ESPNQLQLVKEPLSAPF
Sbjct: 61  GEGDSQPSLPPP-PSLPSLGDIKEERGRCQCFYVSTESPNQLQLVKEPLSAPF 112

[Close]

BLAST of Clc09G00060 vs. NCBI nr
Match: XP_022992446.1 (uncharacterized protein LOC111488747 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39
Identity = 88/123 (71.54%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N++ E
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RRGEPQPLLPP----------PLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLS 114
             GE  PLLPP          P PPPP +GD KEERGRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  GGGE-LPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICIESPNQLQLLKEPLS 120

[Close]

BLAST of Clc09G00060 vs. NCBI nr
Match: XP_023521779.1 (uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.1 uncharacterized protein LOC111807614 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-38
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N+M E
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHMIE 60

Query: 61  RRGEPQPLLPP---PL------PPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSA 114
            RGE  PLLPP   PL      P PP +GD KEERGRCQCSYIS ESPNQLQL+KEPLSA
Sbjct: 61  -RGE-LPLLPPLSSPLSSAAGPPAPPFVGDYKEERGRCQCSYISIESPNQLQLLKEPLSA 120

[Close]

BLAST of Clc09G00060 vs. NCBI nr
Match: KAG6575517.1 (hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014056.1 hypothetical protein SDJN02_24228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 7.1e-37
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N++ E
Sbjct: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RRGEPQPLLPP---PL--------PPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPL 114
            RGE  PLLPP   PL        PPPP +GD  EERGRCQCSYI  ESPNQLQL+KEPL
Sbjct: 61  -RGE-LPLLPPLSSPLSSAAAAGPPPPPFVGDYNEERGRCQCSYICIESPNQLQLLKEPL 120

[Close]

BLAST of Clc09G00060 vs. NCBI nr
Match: XP_022954046.1 (uncharacterized protein LOC111456424 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N++ E
Sbjct: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RRGEPQPLLPP---PL-------PPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLS 114
            RGE  PLLPP   PL       PPPP +GD  EE GRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  -RGE-LPLLPPLSSPLSSAAAGPPPPPFVGDYNEESGRCQCSYICIESPNQLQLLKEPLS 120

[Close]

BLAST of Clc09G00060 vs. ExPASy TrEMBL
Match: A0A6J1JTK7 (uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 88/123 (71.54%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N++ E
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RRGEPQPLLPP----------PLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLS 114
             GE  PLLPP          P PPPP +GD KEERGRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  GGGE-LPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICIESPNQLQLLKEPLS 120

[Close]

BLAST of Clc09G00060 vs. ExPASy TrEMBL
Match: A0A6J1GPS6 (uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC111456424 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPN  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+E S++ IDIVER KP+N++ E
Sbjct: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RRGEPQPLLPP---PL-------PPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLS 114
            RGE  PLLPP   PL       PPPP +GD  EE GRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  -RGE-LPLLPPLSSPLSSAAAGPPPPPFVGDYNEESGRCQCSYICIESPNQLQLLKEPLS 120

[Close]

BLAST of Clc09G00060 vs. ExPASy TrEMBL
Match: A0A1S3CH00 (uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.9e-33
Identity = 82/115 (71.30%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSE S+V ID+VER KP+ YMFE
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISA-ESPNQ-LQLVKEPLSAPF 114
           R G              SLG+ +EER RCQCSY+S  +SPN+ LQL+KEPLSAPF
Sbjct: 61  RGGVGG---GESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of Clc09G00060 vs. ExPASy TrEMBL
Match: A0A6J1DD75 (uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019960 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.5e-28
Identity = 71/113 (62.83%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAK  +CCSIELEPKTLN GQL++AREVAADVVQKLEP E S V ID+VERFK +N   E
Sbjct: 1   MAKAKICCSIELEPKTLNHGQLYRAREVAADVVQKLEPEEASAVXIDVVERFKTVNQTIE 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF 114
             GEP             L D  E R RCQCS +  ESPNQ+QL+KEPLSAPF
Sbjct: 61  -SGEPS----------RPLQDYVEGRERCQCSCLPTESPNQMQLLKEPLSAPF 102

[Close]

BLAST of Clc09G00060 vs. ExPASy TrEMBL
Match: A0A0A0K9S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SE ++V ID+VER +P+  MF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISA-ESPNQ-LQLVKEPLSAPF 114
             G              SL + +EER RCQCSY+S  +SPN+ L+L+KEPLSAPF
Sbjct: 61  GGG----------GGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

The following BLAST results are available for this feature:

BLAST of Clc09G00060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898732.1	2.4e-45	84.96	uncharacterized protein LOC120086256 [Benincasa hispida]	[more]
XP_022992446.1	3.4e-39	71.54	uncharacterized protein LOC111488747 [Cucurbita maxima]	[more]
XP_023521779.1	1.7e-38	74.59	uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181....	[more]
KAG6575517.1	7.1e-37	70.97	hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954046.1	2.7e-36	70.73	uncharacterized protein LOC111456424 [Cucurbita moschata]	[more]

BLAST of Clc09G00060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G00060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTK7	1.6e-39	71.54	uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747...	[more]
A0A6J1GPS6	1.3e-36	70.73	uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A1S3CH00	3.9e-33	71.30	uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=...	[more]
A0A6J1DD75	6.5e-28	62.83	uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A0A0K9S8	1.4e-27	63.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1	[more]

BLAST of Clc09G00060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	PANTHER	PTHR34808	EXPRESSED PROTEIN	coord: 1..113
None	No IPR available	PANTHER	PTHR34808:SF5	SUBFAMILY NOT NAMED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G00060.1	Clc09G00060.1	mRNA