Clc08G18250 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACGGGCAGCGAGGAGGTGAATTATGGGGTAGATGGACCCGGTAAGGAGAGGAGCAGTGCCAGACAGTGGGGGTGGAATTCGAGGATCTTATTTTTACTTGCTCAAACATGGCTACCCTCGTTTTCAATCCCCCTCTATTTTCTAAAATTTGCGAGTTTCTTGCTCTTTCTTCCTTTAATTTCCATCCAAACATGTCTTCAGTCCCTATAATTACTTCTTCTGGAATTGGCTTCCCTCAGTGTTCAGGTTCCTCGAAGCTCTGTCTTCAACAAATTCGGTCTCGTCATGTGGTGAACCGCAGATTTGTGGCGTCCAAATCTGTGAGATGTACCATATCTCGTGAACTTAATCTCACTTCCTCTAACAAATTAGGTAGTCGACGCCCTAACTGCGATCTCGATTCGATTGCAATTCCGGTTTATACGTCTGAATTAGTGGCTGATAGGCTCCATGGGCTTGTTTTGGAATTCGAGTCTCTGTTGGAGCCGATTGATCGGGTTAAACGACTATTGCATTACGCAGCGATTCTTGACCCTTCGGACGAATCGATTCGAGTTCCGGAGAATCGAGTGAGGGGATGCGCAACGCAGGTGTGGTTGGATGTGAAAATAGACGAGTTGGATCGAATGAGATTTAAAGCGGATAGCGATTCGGAGATAGCGAAGGGATATTGTTCGTGTTTGATCTGGATGCTGGAAGGTGCGGAGGCATGGGAGGTTTTGAAGGTGAGGAGCGATGATTTGGAGGCTGTGAATGTTGGATTGCACGGAAAAGCGACGTCTAGGGTGAATACATGGCAAAATGTGTTGATGAGTATGCAAATAAGGACCAAGAGTTTGATCTCCGGGAGTGCAGGGAAGCCGCAATTGGAGCCTTTAATCTTCCGTGCTGTTCATCATCGCTGATTGGGTAAGCGCCATCATTAAAAATTTAAAAAGCAGCAGACTAAAATTAATTAATCAATTCTATATTTGTGTAGCCTGCAATATTCACCACACCAACACTATTTGATTGTAACATCTAATTATATGATTTATTGAGTTACCAAATTTGTTAATAATCTGTTAATACTATGTTACTGGGTTATTATAAATACCCTTGGATGAGAATTGAAAATCTATTTCACAGTTTCGGTATCCGAGTTAGAATCTATCAAATAGTATAGTTTCCATCTCTAAACCAATCGGATCTCAACAAACTTGCGTCTTCTCTCGTTCTACTTTTTCATCCGTGGCTTCGGTACTTGAACATCCATCCTATTCGAAACAACTTCAATCTCTTCTATGGCTAACGAGGGCAAGGAA ACGGGCAGCGAGGAGGTGAATTATGGGGTAGATGGACCCGGTAAGGAGAGGAGCAGTGCCAGACAGTGGGGGTGGAATTCGAGGATCTTATTTTTACTTGCTCAAACATGGCTACCCTCGTTTTCAATCCCCCTCTATTTTCTAAAATTTGCGAGTTTCTTGCTCTTTCTTCCTTTAATTTCCATCCAAACATGTCTTCAGTCCCTATAATTACTTCTTCTGGAATTGGCTTCCCTCAGTGTTCAGGTTCCTCGAAGCTCTGTCTTCAACAAATTCGGTCTCGTCATGTGGTGAACCGCAGATTTGTGGCGTCCAAATCTGTGAGATGTACCATATCTCGTGAACTTAATCTCACTTCCTCTAACAAATTAGGTAGTCGACGCCCTAACTGCGATCTCGATTCGATTGCAATTCCGGTTTATACGTCTGAATTAGTGGCTGATAGGCTCCATGGGCTTGTTTTGGAATTCGAGTCTCTGTTGGAGCCGATTGATCGGGTTAAACGACTATTGCATTACGCAGCGATTCTTGACCCTTCGGACGAATCGATTCGAGTTCCGGAGAATCGAGTGAGGGGATGCGCAACGCAGGTGTGGTTGGATGTGAAAATAGACGAGTTGGATCGAATGAGATTTAAAGCGGATAGCGATTCGGAGATAGCGAAGGGATATTGTTCGTGTTTGATCTGGATGCTGGAAGGTGCGGAGGCATGGGAGGTTTTGAAGGTGAGGAGCGATGATTTGGAGGCTGTGAATGTTGGATTGCACGGAAAAGCGACGTCTAGGGTGAATACATGGCAAAATGTGTTGATGAGTATGCAAATAAGGACCAAGAGTTTGATCTCCGGGAGTGCAGGGAAGCCGCAATTGGAGCCTTTAATCTTCCGTGCTGTTCATCATCGCTGATTGGGTAAGCGCCATCATTAAAAATTTAAAAAGCAGCAGACTAAAATTAATTAATCAATTCTATATTTGTGTAGCCTGCAATATTCACCACACCAACACTATTTGATTGTAACATCTAATTATATGATTTATTGAGTTACCAAATTTGTTAATAATCTGTTAATACTATGTTACTGGGTTATTATAAATACCCTTGGATGAGAATTGAAAATCTATTTCACAGTTTCGGTATCCGAGTTAGAATCTATCAAATAGTATAGTTTCCATCTCTAAACCAATCGGATCTCAACAAACTTGCGTCTTCTCTCGTTCTACTTTTTCATCCGTGGCTTCGGTACTTGAACATCCATCCTATTCGAAACAACTTCAATCTCTTCTATGGCTAACGAGGGCAAGGAA ATGGCTACCCTCGTTTTCAATCCCCCTCTATTTTCTAAAATTTGCGAGTTTCTTGCTCTTTCTTCCTTTAATTTCCATCCAAACATGTCTTCAGTCCCTATAATTACTTCTTCTGGAATTGGCTTCCCTCAGTGTTCAGGTTCCTCGAAGCTCTGTCTTCAACAAATTCGGTCTCGTCATGTGGTGAACCGCAGATTTGTGGCGTCCAAATCTGTGAGATGTACCATATCTCGTGAACTTAATCTCACTTCCTCTAACAAATTAGGTAGTCGACGCCCTAACTGCGATCTCGATTCGATTGCAATTCCGGTTTATACGTCTGAATTAGTGGCTGATAGGCTCCATGGGCTTGTTTTGGAATTCGAGTCTCTGTTGGAGCCGATTGATCGGGTTAAACGACTATTGCATTACGCAGCGATTCTTGACCCTTCGGACGAATCGATTCGAGTTCCGGAGAATCGAGTGAGGGGATGCGCAACGCAGGTGTGGTTGGATGTGAAAATAGACGAGTTGGATCGAATGAGATTTAAAGCGGATAGCGATTCGGAGATAGCGAAGGGATATTGTTCGTGTTTGATCTGGATGCTGGAAGGTGCGGAGGCATGGGAGGTTTTGAAGGTGAGGAGCGATGATTTGGAGGCTGTGAATGTTGGATTGCACGGAAAAGCGACGTCTAGGGTGAATACATGGCAAAATGTGTTGATGAGTATGCAAATAAGGACCAAGAGTTTGATCTCCGGGAGTGCAGGGAAGCCGCAATTGGAGCCTTTAATCTTCCGTGCTGTTCATCATCGCTGA MATLVFNPPLFSKICEFLALSSFNFHPNMSSVPIITSSGIGFPQCSGSSKLCLQQIRSRHVVNRRFVASKSVRCTISRELNLTSSNKLGSRRPNCDLDSIAIPVYTSELVADRLHGLVLEFESLLEPIDRVKRLLHYAAILDPSDESIRVPENRVRGCATQVWLDVKIDELDRMRFKADSDSEIAKGYCSCLIWMLEGAEAWEVLKVRSDDLEAVNVGLHGKATSRVNTWQNVLMSMQIRTKSLISGSAGKPQLEPLIFRAVHHR Homology
BLAST of Clc08G18250 vs. NCBI nr
Match: XP_038886328.1 (sufE-like protein 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 453.8 bits (1166), Expect = 1.1e-123 Identity = 225/265 (84.91%), Postives = 238/265 (89.81%), Query Frame = 0
BLAST of Clc08G18250 vs. NCBI nr
Match: KAA0061053.1 (sufE-like protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 383.6 bits (984), Expect = 1.3e-102 Identity = 193/237 (81.43%), Postives = 205/237 (86.50%), Query Frame = 0
BLAST of Clc08G18250 vs. NCBI nr
Match: XP_008444379.1 (PREDICTED: sufE-like protein 2, chloroplastic [Cucumis melo]) HSP 1 Score: 375.9 bits (964), Expect = 2.8e-100 Identity = 192/237 (81.01%), Postives = 202/237 (85.23%), Query Frame = 0
BLAST of Clc08G18250 vs. NCBI nr
Match: XP_022131476.1 (sufE-like protein 2, chloroplastic [Momordica charantia]) HSP 1 Score: 372.5 bits (955), Expect = 3.1e-99 Identity = 186/237 (78.48%), Postives = 205/237 (86.50%), Query Frame = 0
BLAST of Clc08G18250 vs. NCBI nr
Match: XP_004143058.1 (sufE-like protein 2, chloroplastic [Cucumis sativus] >KGN62329.1 hypothetical protein Csa_018584 [Cucumis sativus]) HSP 1 Score: 340.5 bits (872), Expect = 1.3e-89 Identity = 176/237 (74.26%), Postives = 190/237 (80.17%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy Swiss-Prot
Match: Q9FXE3 (SufE-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SUFE2 PE=2 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 6.1e-50 Identity = 109/210 (51.90%), Postives = 139/210 (66.19%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy Swiss-Prot
Match: Q9FGS4 (Quinolinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=QS PE=1 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37 Identity = 78/152 (51.32%), Postives = 108/152 (71.05%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy Swiss-Prot
Match: Q2QTL0 (Quinolinate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0290150 PE=3 SV=2) HSP 1 Score: 118.2 bits (295), Expect = 1.4e-25 Identity = 66/145 (45.52%), Postives = 84/145 (57.93%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy Swiss-Prot
Match: Q84W65 (SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SUFE1 PE=1 SV=2) HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12 Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy Swiss-Prot
Match: P74523 (Uncharacterized SufE-like protein slr1419 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1419 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 9.6e-11 Identity = 43/145 (29.66%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy TrEMBL
Match: A0A5A7UYK2 (SufE-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001910 PE=4 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 6.5e-103 Identity = 193/237 (81.43%), Postives = 205/237 (86.50%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy TrEMBL
Match: A0A1S3BAY5 (sufE-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487725 PE=4 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 1.4e-100 Identity = 192/237 (81.01%), Postives = 202/237 (85.23%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy TrEMBL
Match: A0A6J1BPL7 (sufE-like protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004673 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99 Identity = 186/237 (78.48%), Postives = 205/237 (86.50%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy TrEMBL
Match: A0A0A0LMT7 (SufE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G349630 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 6.3e-90 Identity = 176/237 (74.26%), Postives = 190/237 (80.17%), Query Frame = 0
BLAST of Clc08G18250 vs. ExPASy TrEMBL
Match: A0A6J1GIN9 (sufE-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454514 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 1.6e-85 Identity = 169/220 (76.82%), Postives = 192/220 (87.27%), Query Frame = 0
BLAST of Clc08G18250 vs. TAIR 10
Match: AT1G67810.1 (sulfur E2 ) HSP 1 Score: 199.1 bits (505), Expect = 4.4e-51 Identity = 109/210 (51.90%), Postives = 139/210 (66.19%), Query Frame = 0
BLAST of Clc08G18250 vs. TAIR 10
Match: AT5G50210.1 (quinolinate synthase ) HSP 1 Score: 157.5 bits (397), Expect = 1.5e-38 Identity = 78/152 (51.32%), Postives = 108/152 (71.05%), Query Frame = 0
BLAST of Clc08G18250 vs. TAIR 10
Match: AT4G26500.1 (chloroplast sulfur E ) HSP 1 Score: 75.5 bits (184), Expect = 7.3e-14 Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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