Clc08G18170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G18170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	anther-specific protein BCP1-like
Location	ClcChr08: 28275630 .. 28276094 (+)
RNA-Seq Expression	Clc08G18170
Synteny	Clc08G18170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAGCACCAAAAATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAAGTGGAGGAGAGATTGATTTCATGTGTTTTGTGTGCTTTCATATTTTTAATCATTTGCAATTGTTCGTGAAATGGAAATTCGAATAAAAAGGAAATAAGTGAGGGTTATTACAATTTA

mRNA sequence

AAAAAAAAAAAAGCACCAAAAATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAAGTGGAGGAGAGATTGATTTCATGTGTTTTGTGTGCTTTCATATTTTTAATCATTTGCAATTGTTCGTGAAATGGAAATTCGAATAAAAAGGAAATAAGTGAGGGTTATTACAATTTA

Coding sequence (CDS)

ATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAA

Protein sequence

MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAGSDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF

Homology

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BLAST of Clc08G18170 vs. NCBI nr
Match: XP_038885796.1 (outer membrane protein H.8-like [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 95/108 (87.96%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GFACAA+PAE+PK SADNADVGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFACAATPAESPKASADNADVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S+DVVEAPIGGP AAA GFVPAE+P SGASAV+FSA  A AAVAGFFF
Sbjct: 61  SEDVVEAPIGGPDAAAAGFVPAESPKSGASAVKFSATVAGAAVAGFFF 108

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BLAST of Clc08G18170 vs. NCBI nr
Match: XP_016899951.1 (PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GFACAASPAEAPKGSAD+A  GA LAP A+N IGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADSAGAGATLAPAADNAIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S++VVEAP+GGPG+AA G VPA AP SGASA++FSAVAAVAAVAGFFF
Sbjct: 61  SNEVVEAPVGGPGSAAAGVVPAPAP-SGASALKFSAVAAVAAVAGFFF 107

[Close]

BLAST of Clc08G18170 vs. NCBI nr
Match: XP_022997549.1 (anther-specific protein BCP1-like [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVV AL+LFA+VGFACAASPAE+PKGSA+N DVG  LAPGA+ EIGNT+G DA  G
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVGDLLAPGADKEIGNTDGGDATDG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           SDDVVE PIGGPG   G  VPAEAP SGASAVE SAVAA+ AVAG+FF
Sbjct: 61  SDDVVEGPIGGPGVPGGESVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of Clc08G18170 vs. NCBI nr
Match: XP_022962552.1 (anther-specific protein BCP1-like [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 81/108 (75.00%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVV ALVLFA+VGFA AASP+E+PKGSA+N DVG  LAPGA+ EIGNT+G DA  G
Sbjct: 1   MARQFVVLALVLFAIVGFATAASPSESPKGSANNTDVGDLLAPGADKEIGNTDGGDATNG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           SDDVVE PIGGPG   G  VPAEAP SGASAVEFS   A+ AVAGFFF
Sbjct: 61  SDDVVEGPIGGPGVPGGESVPAEAPKSGASAVEFS---ALVAVAGFFF 105

[Close]

BLAST of Clc08G18170 vs. NCBI nr
Match: KAG6598249.1 (Protein terminal ear1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-27
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVV ALVLFA+VGFA AASP+E+PKGSA+N DVG  LAPGA+ EIGNT+G DA  G
Sbjct: 1   MARQFVVLALVLFAIVGFATAASPSESPKGSANNTDVGDLLAPGADKEIGNTDGGDATNG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           SDDVVE PIGGPG   G  VPAEAP SGASAV+FS   A+ AVAGF F
Sbjct: 61  SDDVVEGPIGGPGVPGGESVPAEAPKSGASAVKFS---ALVAVAGFLF 105

[Close]

BLAST of Clc08G18170 vs. ExPASy TrEMBL
Match: A0A0A0LQR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.6e-37
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GF CAA+PAEAPKGSAD A VGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S+DVVEAP+GGPGA AGGFVPA AP S ASA+EFSA AAV AVAGFFF
Sbjct: 61  SEDVVEAPVGGPGATAGGFVPAPAP-SAASALEFSAAAAVTAVAGFFF 107

[Close]

BLAST of Clc08G18170 vs. ExPASy TrEMBL
Match: A0A1S4DVD7 (classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC107990709 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.8e-34
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GFACAASPAEAPKGSAD+A  GA LAP A+N IGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADSAGAGATLAPAADNAIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S++VVEAP+GGPG+AA G VPA AP SGASA++FSAVAAVAAVAGFFF
Sbjct: 61  SNEVVEAPVGGPGSAAAGVVPAPAP-SGASALKFSAVAAVAAVAGFFF 107

[Close]

BLAST of Clc08G18170 vs. ExPASy TrEMBL
Match: A0A6J1KBR3 (anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.0e-31
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVV AL+LFA+VGFACAASPAE+PKGSA+N DVG  LAPGA+ EIGNT+G DA  G
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVGDLLAPGADKEIGNTDGGDATDG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           SDDVVE PIGGPG   G  VPAEAP SGASAVE SAVAA+ AVAG+FF
Sbjct: 61  SDDVVEGPIGGPGVPGGESVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of Clc08G18170 vs. ExPASy TrEMBL
Match: A0A6J1HCZ7 (anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111462951 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.8e-28
Identity = 81/108 (75.00%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVV ALVLFA+VGFA AASP+E+PKGSA+N DVG  LAPGA+ EIGNT+G DA  G
Sbjct: 1   MARQFVVLALVLFAIVGFATAASPSESPKGSANNTDVGDLLAPGADKEIGNTDGGDATNG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           SDDVVE PIGGPG   G  VPAEAP SGASAVEFS   A+ AVAGFFF
Sbjct: 61  SDDVVEGPIGGPGVPGGESVPAEAPKSGASAVEFS---ALVAVAGFFF 105

[Close]

BLAST of Clc08G18170 vs. ExPASy TrEMBL
Match: A0A6J1DFK4 (anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.0e-27
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADN--ADVGAQLAPGAENEIGNTEG-ADA 60
           MARQFV FALVLFAVVGFACAASPAE PK +A++  AD GA  APGA+NEIGNT+G A A
Sbjct: 1   MARQFVAFALVLFAVVGFACAASPAEPPKAAANSTAADAGAAAAPGADNEIGNTDGAAAA 60

Query: 61  PAGSDDVVEAPIGGPGAAAGG-FVPAEAPNSGASAVEFSAVAAVAAVAGFF 108
           P   +D+VE P+GGPGAAAGG  VPAE+P SGA AV+ SAVA VAA+AGFF
Sbjct: 61  PGAGEDIVEGPVGGPGAAAGGDLVPAESPKSGAEAVKISAVAGVAAIAGFF 111

The following BLAST results are available for this feature:

BLAST of Clc08G18170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885796.1	4.7e-38	87.96	outer membrane protein H.8-like [Benincasa hispida]	[more]
XP_016899951.1	1.2e-33	83.33	PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo]	[more]
XP_022997549.1	1.2e-30	76.85	anther-specific protein BCP1-like [Cucurbita maxima]	[more]
XP_022962552.1	5.8e-28	75.00	anther-specific protein BCP1-like [Cucurbita moschata]	[more]
KAG6598249.1	8.3e-27	73.15	Protein terminal ear1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc08G18170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G18170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQR1	9.6e-37	87.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1	[more]
A0A1S4DVD7	5.8e-34	83.33	classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC10799070...	[more]
A0A6J1KBR3	6.0e-31	76.85	anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE...	[more]
A0A6J1HCZ7	2.8e-28	75.00	anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111462951 ...	[more]
A0A6J1DFK4	9.0e-27	72.07	anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4...	[more]

BLAST of Clc08G18170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..66
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G18170.1	Clc08G18170.1	mRNA