Clc08G17760 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G17760
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box protein At1g67340-like
Location	ClcChr08: 27986040 .. 27988219 (-)
RNA-Seq Expression	Clc08G17760
Synteny	Clc08G17760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATAATTAAAAAACAAAGAAAAAGAACATCATTATTTTGGAAGAGAGAAACCCACACACAAACGCACAGAAAATTAAATTAAATTTAAAAAAGGAAAGAGAAAGAAAGAAAGAAAAGGTTATTTCTTTTGGGTTTGTAGTAGTACAGAACAGAGGAGGGAGCAGTCCAAAAAGCTGCCCCTCCTCCTGAGGACCCTCGCGGGCATTTCGGTCAACCCAATTTTGACCTTTGAATACGACAACAACCAGCGAAGGCTAATTTGGTAAATTCGCACACCCTCCCCTGTTTTATTTTGTTGTTGTTGTTCATGTTCTTGGTTCTTGGTTTCTTTCTATATGAGCTCCTCTTTGTCACTTCCTTTTTCCTTCTGCGTTTGACTGTGTCAGGTCAGGCCCCCATGAGAACCCCCACTCCCAACAGCATCACCATGAACAACAACACACGATTTTATTCTTCTAATTCCTTCAAAAGAAATCGTTTCTCTTCTAAATCTGATTTCTTTGACTCTTTACCTGACGATCTTCTCATCTCTATTCTATCTAAACTTGCCTCCTCTGCTTCTTCCCCTTCCGATTTCATCAAAGCTTTGATTACGTACGTCATCTTATTCTTATTACACTTTTTTTTTCTTTTGTCAATTAAAGATGAACAATTTTGGCTGATTGAATTTTTTGTGTTAACAGATGCAAAAGATTCAACAATTTAGGGCGTCATTCCCTTGTTTTATCCAAAGCTTCTCAAAGAACTTTGGGAATTAGTGCCAAAAACTGGTCGGAATCCGCCCACCGGTTCCTTAAACAGTGCGTTGACGCTGGCAACGTTGAGGCTTGTTATATTCTCGGCATGGTAAAAAGATTAAAAGGAAATTGACAAATTTCCCTTTTTTTGGTTTTGTTTTGGGTCTCTGAATTTTTTTTTTAATATTTTAGATTCGATTTTACTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTGCCACGCGCCGGCGCTATACTCACTCTCCGTCATACAGTTCAACGGCAGCGGTGGCTCAAAGAATGATAAGGATTTAAGAGCGGGTGTGGCCCTTTGTGCCAGAGCTGCCTTTTTGGGCCATATTGACGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGGGTTTGTCAGAACATTATGGAGGGCCGTCGATTTCTAGTTCAAGCCAACGCAAGGGAACTCGCCGCCGTGCTGTCGTCGTCGACAGCGGCGGCTTCACGTTCTTGGGTCACGTGCAATCCGCACGCTCACCACCGCACGGCGGTGGGGTCGTCTTCCGAGTGCCCGTTGCTGAGCGATTTTGGGTGTAATGTTCCGGCGCCGGAAGCTCATCCGGCGAGCAGGTTTATGGCGGAGTGGTTTGCCTTACGCGGTGGCGCGCCGGGGCCGGGGCTGAGGCTTTGTTCACATGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAAGCGGAATGTGCGCCGTTGGAGATGTGGCCGGAAAATGACGGTGACGGCGGTGAAGCCGACGGCGACGGTGAAATTCTAAATGAGAATGACGAGGAGGATGTAATTGGGGAAAGTTAAATTAAACGGAGGTGAAGACTTAATCTCCTTTACGGTTTTACGGAATTTAAACGGCGAGTAACGGTCGTTGTAACGGAAGAGGAAAAAAGGGACTACCTAACAAAGCAAAGGCCCATCCCTCCTAAAAGGCTCAATCTCTAATCCCACCTCCCCCACTGTTTTTCCTTTCTTTTTTCCTTTTTAAACTTTTGTTAATATAATTTTTGTAGAGTACAGTGCAACGATTGTCAACTTCGACCTTAGGTAATCAAAGATCTAATTTTTTTAGATTTTCAGAATCTTTAAAATTTTCAAACTGTATTATATTCTTCATTAGAATTATTCGTTTCCTTTACTATTTGATTAAATTTTCGTTTCTGATTATTGTTTTGGAAGTTATAATAACCAATAGGAAACAAATTCAATTTAGTAGAGAATTGTCTAAAACAGACCGAGGCATCTTAGAATAGATTATGTGAAATTTGAGATTATTGAAAATGAATGATGAAG

mRNA sequence

AATAATAATTAAAAAACAAAGAAAAAGAACATCATTATTTTGGAAGAGAGAAACCCACACACAAACGCACAGAAAATTAAATTAAATTTAAAAAAGGAAAGAGAAAGAAAGAAAGAAAAGGTTATTTCTTTTGGGTTTGTAGTAGTACAGAACAGAGGAGGGAGCAGTCCAAAAAGCTGCCCCTCCTCCTGAGGACCCTCGCGGGCATTTCGGTCAACCCAATTTTGACCTTTGAATACGACAACAACCAGCGAAGGCTAATTTGGTAAATTCGCACACCCTCCCCTGTTTTATTTTGTTGTTGTTGTTCATGTTCTTGGTTCTTGGTTTCTTTCTATATGAGCTCCTCTTTGTCACTTCCTTTTTCCTTCTGCGTTTGACTGTGTCAGGTCAGGCCCCCATGAGAACCCCCACTCCCAACAGCATCACCATGAACAACAACACACGATTTTATTCTTCTAATTCCTTCAAAAGAAATCGTTTCTCTTCTAAATCTGATTTCTTTGACTCTTTACCTGACGATCTTCTCATCTCTATTCTATCTAAACTTGCCTCCTCTGCTTCTTCCCCTTCCGATTTCATCAAAGCTTTGATTACATGCAAAAGATTCAACAATTTAGGGCGTCATTCCCTTGTTTTATCCAAAGCTTCTCAAAGAACTTTGGGAATTAGTGCCAAAAACTGGTCGGAATCCGCCCACCGGTTCCTTAAACAGTGCGTTGACGCTGGCAACGTTGAGGCTTGTTATATTCTCGGCATGATTCGATTTTACTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTGCCACGCGCCGGCGCTATACTCACTCTCCGTCATACAGTTCAACGGCAGCGGTGGCTCAAAGAATGATAAGGATTTAAGAGCGGGTGTGGCCCTTTGTGCCAGAGCTGCCTTTTTGGGCCATATTGACGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGGGTTTGTCAGAACATTATGGAGGGCCGTCGATTTCTAGTTCAAGCCAACGCAAGGGAACTCGCCGCCGTGCTGTCGTCGTCGACAGCGGCGGCTTCACGTTCTTGGGTCACGTGCAATCCGCACGCTCACCACCGCACGGCGGTGGGGTCGTCTTCCGAGTGCCCGTTGCTGAGCGATTTTGGGTGTAATGTTCCGGCGCCGGAAGCTCATCCGGCGAGCAGGTTTATGGCGGAGTGGTTTGCCTTACGCGGTGGCGCGCCGGGGCCGGGGCTGAGGCTTTGTTCACATGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAAGCGGAATGTGCGCCGTTGGAGATGTGGCCGGAAAATGACGGTGACGGCGGTGAAGCCGACGGCGACGGTGAAATTCTAAATGAGAATGACGAGGAGGATGTAATTGGGGAAAGTTAAATTAAACGGAGGTGAAGACTTAATCTCCTTTACGGTTTTACGGAATTTAAACGGCGAGTAACGGTCGTTGTAACGGAAGAGGAAAAAAGGGACTACCTAACAAAGCAAAGGCCCATCCCTCCTAAAAGGCTCAATCTCTAATCCCACCTCCCCCACTGTTTTTCCTTTCTTTTTTCCTTTTTAAACTTTTGTTAATATAATTTTTGTAGAGTACAGTGCAACGATTGTCAACTTCGACCTTAGGTAATCAAAGATCTAATTTTTTTAGATTTTCAGAATCTTTAAAATTTTCAAACTGTATTATATTCTTCATTAGAATTATTCGTTTCCTTTACTATTTGATTAAATTTTCGTTTCTGATTATTGTTTTGGAAGTTATAATAACCAATAGGAAACAAATTCAATTTAGTAGAGAATTGTCTAAAACAGACCGAGGCATCTTAGAATAGATTATGTGAAATTTGAGATTATTGAAAATGAATGATGAAG

Coding sequence (CDS)

ATGTTCTTGGTTCTTGGTTTCTTTCTATATGAGCTCCTCTTTGTCACTTCCTTTTTCCTTCTGCGTTTGACTGTGTCAGGTCAGGCCCCCATGAGAACCCCCACTCCCAACAGCATCACCATGAACAACAACACACGATTTTATTCTTCTAATTCCTTCAAAAGAAATCGTTTCTCTTCTAAATCTGATTTCTTTGACTCTTTACCTGACGATCTTCTCATCTCTATTCTATCTAAACTTGCCTCCTCTGCTTCTTCCCCTTCCGATTTCATCAAAGCTTTGATTACATGCAAAAGATTCAACAATTTAGGGCGTCATTCCCTTGTTTTATCCAAAGCTTCTCAAAGAACTTTGGGAATTAGTGCCAAAAACTGGTCGGAATCCGCCCACCGGTTCCTTAAACAGTGCGTTGACGCTGGCAACGTTGAGGCTTGTTATATTCTCGGCATGATTCGATTTTACTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTGCCACGCGCCGGCGCTATACTCACTCTCCGTCATACAGTTCAACGGCAGCGGTGGCTCAAAGAATGATAAGGATTTAAGAGCGGGTGTGGCCCTTTGTGCCAGAGCTGCCTTTTTGGGCCATATTGACGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGGGTTTGTCAGAACATTATGGAGGGCCGTCGATTTCTAGTTCAAGCCAACGCAAGGGAACTCGCCGCCGTGCTGTCGTCGTCGACAGCGGCGGCTTCACGTTCTTGGGTCACGTGCAATCCGCACGCTCACCACCGCACGGCGGTGGGGTCGTCTTCCGAGTGCCCGTTGCTGAGCGATTTTGGGTGTAATGTTCCGGCGCCGGAAGCTCATCCGGCGAGCAGGTTTATGGCGGAGTGGTTTGCCTTACGCGGTGGCGCGCCGGGGCCGGGGCTGAGGCTTTGTTCACATGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAAGCGGAATGTGCGCCGTTGGAGATGTGGCCGGAAAATGACGGTGACGGCGGTGAAGCCGACGGCGACGGTGAAATTCTAAATGAGAATGACGAGGAGGATGTAATTGGGGAAAGTTAA

Protein sequence

MFLVLGFFLYELLFVTSFFLLRLTVSGQAPMRTPTPNSITMNNNTRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVIGES

Homology

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BLAST of Clc08G17760 vs. NCBI nr
Match: XP_038885404.1 (F-box protein At1g67340-like [Benincasa hispida])

HSP 1 Score: 693.7 bits (1789), Expect = 9.2e-196
Identity = 356/378 (94.18%), Postives = 363/378 (96.03%), Query Frame = 0


Query: 31  MRT-PTPNSITMN-NNTRF--YSSNSFKRNR-FSSKSDFFDSLPDDLLISILSKLASSAS 90
           MRT  TPNSITMN  NT F   SS+SFKRNR FSSKSDFFDSLPDDLLISILSKLASSAS
Sbjct: 1   MRTSTTPNSITMNKTNTPFSSSSSSSFKRNRCFSSKSDFFDSLPDDLLISILSKLASSAS 60

Query: 91  SPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEAC 150
           SPSDFIK LITCKRFNNLGRHSLVLSKASQRTLGI+AKNWSESAHRFLKQCVDAGNVEAC
Sbjct: 61  SPSDFIKPLITCKRFNNLGRHSLVLSKASQRTLGINAKNWSESAHRFLKQCVDAGNVEAC 120

Query: 151 YILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALC 210
           YILGMIRFYCLQNRGSGASLMAKAAIS HAPALYSL+VIQFNGSGGSKNDKDLRAGVALC
Sbjct: 121 YILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALC 180

Query: 211 ARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTA-AASRSW 270
           ARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTA A SRSW
Sbjct: 181 ARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAGAGSRSW 240

Query: 271 VTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCS 330
           VTCNP AHHRTAVGSS+ECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCS
Sbjct: 241 VTCNPIAHHRTAVGSSAECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCS 300

Query: 331 HVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEAD 390
           HVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLE+WPENDGDGGEA+
Sbjct: 301 HVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDGGEAN 360

Query: 391 GDGEILNENDEEDVIGES 403
           GDG ILNEND+EDVIGES
Sbjct: 361 GDGGILNENDDEDVIGES 378

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BLAST of Clc08G17760 vs. NCBI nr
Match: XP_008444448.1 (PREDICTED: F-box protein At1g67340-like [Cucumis melo])

HSP 1 Score: 682.6 bits (1760), Expect = 2.1e-192
Identity = 340/372 (91.40%), Postives = 350/372 (94.09%), Query Frame = 0


Query: 31  MRTPTPNSITMNNNTRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDF 90
           MRTP P +ITMNNN         KRNRF  KSDFFDSLPDDLLISILSKLASSASSPS F
Sbjct: 1   MRTPAPTTITMNNNN--------KRNRFYPKSDFFDSLPDDLLISILSKLASSASSPSHF 60

Query: 91  IKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 150
           I ALITCKRFN+LGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM
Sbjct: 61  INALITCKRFNHLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 120

Query: 151 IRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAF 210
           IRFYCLQNRGSGASLMAKAAIS HAPALYSL+VIQFNGSGGSKNDKDLRAGVALCARAAF
Sbjct: 121 IRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 180

Query: 211 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPH 270
           LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSS ++AASRSWVTCNP 
Sbjct: 181 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSPSSAASRSWVTCNPQ 240

Query: 271 AHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 330
           A HRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR
Sbjct: 241 AIHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 300

Query: 331 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEIL 390
           PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLE+WPENDGD GE DG+G IL
Sbjct: 301 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDGEVDGEGGIL 360

Query: 391 NENDEEDVIGES 403
           NEN++EDV+GES
Sbjct: 361 NENEDEDVVGES 364

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BLAST of Clc08G17760 vs. NCBI nr
Match: XP_004143042.1 (F-box protein At1g67340 [Cucumis sativus] >KGN62374.1 hypothetical protein Csa_018766 [Cucumis sativus])

HSP 1 Score: 664.8 bits (1714), Expect = 4.6e-187
Identity = 332/367 (90.46%), Postives = 343/367 (93.46%), Query Frame = 0


Query: 31  MRTPTPNSITMNNNTRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDF 90
           MRTPTP +ITMNNN         KRNRF  K DFFDSLPDDLLISILSKL SSASSPS F
Sbjct: 1   MRTPTPTTITMNNNN--------KRNRFYPKFDFFDSLPDDLLISILSKLVSSASSPSHF 60

Query: 91  IKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 150
           I ALITCKRFN+LGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM
Sbjct: 61  INALITCKRFNHLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 120

Query: 151 IRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAF 210
           IRFYCLQNRGSGASLMAKAAIS +APALYSL+VIQFNGSGGSKNDKDLRAGVALCARAAF
Sbjct: 121 IRFYCLQNRGSGASLMAKAAISSYAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 180

Query: 211 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPH 270
           LGH+DALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSS ++AASRS VTCNPH
Sbjct: 181 LGHVDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSPSSAASRSLVTCNPH 240

Query: 271 AHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 330
           A HRTAVGSSS+CPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR
Sbjct: 241 AIHRTAVGSSSDCPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 300

Query: 331 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEIL 390
           PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLE+WPENDGD  E DGDG IL
Sbjct: 301 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDVEVDGDGGIL 359

Query: 391 NENDEED 398
           NEN+E+D
Sbjct: 361 NENEEDD 359

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BLAST of Clc08G17760 vs. NCBI nr
Match: XP_023002802.1 (F-box protein At1g67340-like [Cucurbita maxima])

HSP 1 Score: 639.4 bits (1648), Expect = 2.1e-179
Identity = 328/402 (81.59%), Postives = 349/402 (86.82%), Query Frame = 0


Query: 13  LFVTSFFLLRLTVS--GQAPMRTPTPNSITMNNNTRFYSSNSFKRNRFS------SKSDF 72
           L + S F LRLTVS    +PMRT      +  N    Y S S KR RFS      + SDF
Sbjct: 5   LLLPSLFPLRLTVSDISLSPMRTNMKKRASQTNLQ--YFSGSPKRKRFSPPRSSAAVSDF 64

Query: 73  FDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKN 132
           F SLPDDLLISILSKL+++ASSPSDFI ALITCKRFNNLGRHSLVL+KASQ+TL I AKN
Sbjct: 65  FQSLPDDLLISILSKLSANASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKN 124

Query: 133 WSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVI 192
           WSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAIS HAPALYSL+VI
Sbjct: 125 WSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVI 184

Query: 193 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 252
           QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA
Sbjct: 185 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 244

Query: 253 NARELAAVLSS----STAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHP 312
           NARELAAVLSS    +T  A+RSWVTC+PH HHR AVGSS+ECPLLSDFGCNVPA EAHP
Sbjct: 245 NARELAAVLSSTAATATGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHP 304

Query: 313 ASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 372
           ASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK
Sbjct: 305 ASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 364

Query: 373 LQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVIGES 403
           LQHKAEC+PLE+WPEN+G+GG  DGDG + NEN+ EDVI ES
Sbjct: 365 LQHKAECSPLELWPENEGEGGVGDGDGGVQNENEAEDVIEES 404

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BLAST of Clc08G17760 vs. NCBI nr
Match: XP_022951094.1 (F-box protein At1g67340-like [Cucurbita moschata])

HSP 1 Score: 630.2 bits (1624), Expect = 1.2e-176
Identity = 326/402 (81.09%), Postives = 347/402 (86.32%), Query Frame = 0


Query: 13  LFVTSFFLLRLTVS--GQAPMRTPTPNSITMNNNTRFYSSNSFKRNRFSSK------SDF 72
           L + S F LRLTVS    +PMRT      +  N    Y S S KR RFS        SDF
Sbjct: 5   LMLPSLFPLRLTVSDISLSPMRTNMKKRASQTNLQ--YFSGSPKRRRFSPPRSSAVVSDF 64

Query: 73  FDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKN 132
           F SLPDDLLISILSKL+++ASSPSDFI ALITCKRFNNLGRHSLVL+KASQ+TL I AKN
Sbjct: 65  FQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKN 124

Query: 133 WSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVI 192
           WSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAIS HAPALYSL+VI
Sbjct: 125 WSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVI 184

Query: 193 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 252
           QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA
Sbjct: 185 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 244

Query: 253 NARELAAVLSSS----TAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHP 312
           NARELAAVLSS+    T  A+RSWVTC+PH HHR AVGSS+ECPLLSDFGCNVPA EAHP
Sbjct: 245 NARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHP 304

Query: 313 ASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 372
           ASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK
Sbjct: 305 ASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 364

Query: 373 LQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVIGES 403
           LQHKAEC+PLE+WPEN+G+GG   G+G + NEN+ EDVI ES
Sbjct: 365 LQHKAECSPLELWPENEGEGGV--GEGGVENENEAEDVIEES 402

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BLAST of Clc08G17760 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 2.7e-134
Identity = 235/331 (71.00%), Postives = 272/331 (82.18%), Query Frame = 0


Query: 62  SDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGIS 121
           +D  DS+PDDL+ISIL KL S++  P+DFI  L+TCKR   L  + +VLS+ S + + + 
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 122 AKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSL 181
           A NWSE +HRFLK+CVDAG++EACY LGMIRFYCLQNRG+GASLMAKAAIS HAPALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 182 SVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFL 241
           +VIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN+ EGRRFL
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 242 VQANARELAAVLSSSTAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHPA 301
           VQANARELAAVLSS   A S +W++ +              CPLLSDFGCNVPAPE HPA
Sbjct: 221 VQANARELAAVLSSGIQARS-TWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPA 280

Query: 302 SRFMAEWFALRGG-APGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 361
           +RF+A+WFA+RGG  PG GLRLCSH GCGRPETR+HEFRRCSVCG+VNYCSRACQALDWK
Sbjct: 281 NRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWK 340

Query: 362 LQHKAECAPLEMWPENDGDGGEA----DGDG 388
           L+HK +CAP++ W E +GDGGE     DG+G
Sbjct: 341 LRHKMDCAPVQRWLE-EGDGGEGNVQIDGNG 369

[Close]

BLAST of Clc08G17760 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.4e-109
Identity = 206/342 (60.23%), Postives = 246/342 (71.93%), Query Frame = 0


Query: 45  TRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLG 104
           T        + N  ++ ++ F+ L DDL+ISIL KLA+SASSPSDF+  L TCKR N LG
Sbjct: 2   THLNKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLG 61

Query: 105 RHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGAS 164
            H LVLSKA  +TL ++A+ WS+S+H+FLK CV+AGN++A Y LGMIRFYCLQN  SGAS
Sbjct: 62  LHPLVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGAS 121

Query: 165 LMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCL 224
           LMAKAAI  HAPALYSLSVIQFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCL
Sbjct: 122 LMAKAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCL 181

Query: 225 QDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPHAHHRTAVGSSSECP 284
           QDGYGV +++ EGRR L+QANARELA  L        RS++          ++ S  E  
Sbjct: 182 QDGYGVPRDVSEGRRLLIQANARELACSL--------RSYL----------SLKSGDENE 241

Query: 285 LLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVC 344
            L+D    VP  E HP +RF+ EWF+        GLR+CSH GCGRPETR HEFRRCSVC
Sbjct: 242 TLTDLSV-VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVC 301

Query: 345 GIVNYCSRACQALDWKLQHKAECAPLEMW---PENDGDGGEA 384
           G VNYCSR CQALDW+ +HK EC PL++W       GD GEA
Sbjct: 302 GKVNYCSRGCQALDWRAKHKVECTPLDLWVAAAAEIGDDGEA 324

[Close]

BLAST of Clc08G17760 vs. ExPASy Swiss-Prot
Match: Q2YDC9 (Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.6e-04
Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 0


Query: 281 SECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRR 340
           ++ P  +DF    P  E  P+    + +  L+ GA      LC   GC  P       +R
Sbjct: 98  NQLPRQNDFYSYEPPSEDPPSETGESVYLHLKSGA-----HLCRVCGCSGP-------KR 157

Query: 341 CSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEILNENDEE 397
           CS C   +YCS+  Q+LDW+L HK  CA  +       D      + EI+ E ++E
Sbjct: 158 CSRCHKAHYCSKEHQSLDWRLGHKQACAQTDNLDNIVPDHNFLFPEFEIVIETEDE 201

[Close]

BLAST of Clc08G17760 vs. ExPASy Swiss-Prot
Match: Q16342 (Programmed cell death protein 2 OS=Homo sapiens OX=9606 GN=PDCD2 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-04
Identity = 30/88 (34.09%), Postives = 38/88 (43.18%), Query Frame = 0


Query: 281 SECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRR 340
           ++ P  +DF    P  E  P     +    L+ GA      LC   GC  P+T       
Sbjct: 98  NQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGA-----HLCRVCGCLGPKT------- 157

Query: 341 CSVCGIVNYCSRACQALDWKLQHKAECA 369
           CS C    YCS+  Q LDW+L HK  CA
Sbjct: 158 CSRCHKAYYCSKEHQTLDWRLGHKQACA 173

[Close]

BLAST of Clc08G17760 vs. ExPASy TrEMBL
Match: A0A1S3BB38 (F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103487769 PE=4 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 1.0e-192
Identity = 340/372 (91.40%), Postives = 350/372 (94.09%), Query Frame = 0


Query: 31  MRTPTPNSITMNNNTRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDF 90
           MRTP P +ITMNNN         KRNRF  KSDFFDSLPDDLLISILSKLASSASSPS F
Sbjct: 1   MRTPAPTTITMNNNN--------KRNRFYPKSDFFDSLPDDLLISILSKLASSASSPSHF 60

Query: 91  IKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 150
           I ALITCKRFN+LGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM
Sbjct: 61  INALITCKRFNHLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 120

Query: 151 IRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAF 210
           IRFYCLQNRGSGASLMAKAAIS HAPALYSL+VIQFNGSGGSKNDKDLRAGVALCARAAF
Sbjct: 121 IRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 180

Query: 211 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPH 270
           LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSS ++AASRSWVTCNP 
Sbjct: 181 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSPSSAASRSWVTCNPQ 240

Query: 271 AHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 330
           A HRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR
Sbjct: 241 AIHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 300

Query: 331 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEIL 390
           PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLE+WPENDGD GE DG+G IL
Sbjct: 301 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDGEVDGEGGIL 360

Query: 391 NENDEEDVIGES 403
           NEN++EDV+GES
Sbjct: 361 NENEDEDVVGES 364

[Close]

BLAST of Clc08G17760 vs. ExPASy TrEMBL
Match: A0A0A0LMZ9 (MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351550 PE=4 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 2.2e-187
Identity = 332/367 (90.46%), Postives = 343/367 (93.46%), Query Frame = 0


Query: 31  MRTPTPNSITMNNNTRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDF 90
           MRTPTP +ITMNNN         KRNRF  K DFFDSLPDDLLISILSKL SSASSPS F
Sbjct: 1   MRTPTPTTITMNNNN--------KRNRFYPKFDFFDSLPDDLLISILSKLVSSASSPSHF 60

Query: 91  IKALITCKRFNNLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 150
           I ALITCKRFN+LGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM
Sbjct: 61  INALITCKRFNHLGRHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGM 120

Query: 151 IRFYCLQNRGSGASLMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAF 210
           IRFYCLQNRGSGASLMAKAAIS +APALYSL+VIQFNGSGGSKNDKDLRAGVALCARAAF
Sbjct: 121 IRFYCLQNRGSGASLMAKAAISSYAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 180

Query: 211 LGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPH 270
           LGH+DALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSS ++AASRS VTCNPH
Sbjct: 181 LGHVDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSPSSAASRSLVTCNPH 240

Query: 271 AHHRTAVGSSSECPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 330
           A HRTAVGSSS+CPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR
Sbjct: 241 AIHRTAVGSSSDCPLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGR 300

Query: 331 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEMWPENDGDGGEADGDGEIL 390
           PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLE+WPENDGD  E DGDG IL
Sbjct: 301 PETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDVEVDGDGGIL 359

Query: 391 NENDEED 398
           NEN+E+D
Sbjct: 361 NENEEDD 359

[Close]

BLAST of Clc08G17760 vs. ExPASy TrEMBL
Match: A0A6J1KKI0 (F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111496556 PE=4 SV=1)

HSP 1 Score: 639.4 bits (1648), Expect = 9.9e-180
Identity = 328/402 (81.59%), Postives = 349/402 (86.82%), Query Frame = 0


Query: 13  LFVTSFFLLRLTVS--GQAPMRTPTPNSITMNNNTRFYSSNSFKRNRFS------SKSDF 72
           L + S F LRLTVS    +PMRT      +  N    Y S S KR RFS      + SDF
Sbjct: 5   LLLPSLFPLRLTVSDISLSPMRTNMKKRASQTNLQ--YFSGSPKRKRFSPPRSSAAVSDF 64

Query: 73  FDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKN 132
           F SLPDDLLISILSKL+++ASSPSDFI ALITCKRFNNLGRHSLVL+KASQ+TL I AKN
Sbjct: 65  FQSLPDDLLISILSKLSANASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKN 124

Query: 133 WSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVI 192
           WSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAIS HAPALYSL+VI
Sbjct: 125 WSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVI 184

Query: 193 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 252
           QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA
Sbjct: 185 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 244

Query: 253 NARELAAVLSS----STAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHP 312
           NARELAAVLSS    +T  A+RSWVTC+PH HHR AVGSS+ECPLLSDFGCNVPA EAHP
Sbjct: 245 NARELAAVLSSTAATATGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHP 304

Query: 313 ASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 372
           ASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK
Sbjct: 305 ASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 364

Query: 373 LQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVIGES 403
           LQHKAEC+PLE+WPEN+G+GG  DGDG + NEN+ EDVI ES
Sbjct: 365 LQHKAECSPLELWPENEGEGGVGDGDGGVQNENEAEDVIEES 404

[Close]

BLAST of Clc08G17760 vs. ExPASy TrEMBL
Match: A0A6J1GHQ9 (F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111454044 PE=4 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 6.0e-177
Identity = 326/402 (81.09%), Postives = 347/402 (86.32%), Query Frame = 0


Query: 13  LFVTSFFLLRLTVS--GQAPMRTPTPNSITMNNNTRFYSSNSFKRNRFSSK------SDF 72
           L + S F LRLTVS    +PMRT      +  N    Y S S KR RFS        SDF
Sbjct: 5   LMLPSLFPLRLTVSDISLSPMRTNMKKRASQTNLQ--YFSGSPKRRRFSPPRSSAVVSDF 64

Query: 73  FDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGISAKN 132
           F SLPDDLLISILSKL+++ASSPSDFI ALITCKRFNNLGRHSLVL+KASQ+TL I AKN
Sbjct: 65  FQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKN 124

Query: 133 WSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSLSVI 192
           WSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAIS HAPALYSL+VI
Sbjct: 125 WSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVI 184

Query: 193 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 252
           QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA
Sbjct: 185 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQA 244

Query: 253 NARELAAVLSSS----TAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHP 312
           NARELAAVLSS+    T  A+RSWVTC+PH HHR AVGSS+ECPLLSDFGCNVPA EAHP
Sbjct: 245 NARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHP 304

Query: 313 ASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 372
           ASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK
Sbjct: 305 ASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 364

Query: 373 LQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVIGES 403
           LQHKAEC+PLE+WPEN+G+GG   G+G + NEN+ EDVI ES
Sbjct: 365 LQHKAECSPLELWPENEGEGGV--GEGGVENENEAEDVIEES 402

[Close]

BLAST of Clc08G17760 vs. ExPASy TrEMBL
Match: F6HGA6 (MYND-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03630 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 4.3e-151
Identity = 272/342 (79.53%), Postives = 295/342 (86.26%), Query Frame = 0


Query: 59  SSKSDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTL 118
           + KSDFF++LPDDL+I ILSKL+SSA  PSDFI  L+TCKRFN LG HSLVLS+AS ++L
Sbjct: 46  AGKSDFFEALPDDLVICILSKLSSSAGCPSDFINVLLTCKRFNGLGLHSLVLSRASSKSL 105

Query: 119 GISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPAL 178
            + AKNWSESA RFLK C DAGNVEACY LGMIRFYCLQNR SGASLMAKAAIS HAPAL
Sbjct: 106 AVRAKNWSESALRFLKLCADAGNVEACYTLGMIRFYCLQNRVSGASLMAKAAISSHAPAL 165

Query: 179 YSLSVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGR 238
           YSL+VIQFNGS GSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGV QN+ EGR
Sbjct: 166 YSLAVIQFNGSVGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVAEGR 225

Query: 239 RFLVQANARELAAVLSS-STAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPE 298
           RFLVQANARELAAVLSS S+A +SRSW+T NPH HHR   GS   CPLLSDFGCNVPAPE
Sbjct: 226 RFLVQANARELAAVLSSASSAVSSRSWLTWNPHQHHRHVTGSG--CPLLSDFGCNVPAPE 285

Query: 299 AHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQAL 358
           AHPASRF+AEWFA RGG PGPGLRLCSH GCGRPE RRHEFRRCSVCGIVNYCSRACQAL
Sbjct: 286 AHPASRFLAEWFAARGGVPGPGLRLCSHAGCGRPEMRRHEFRRCSVCGIVNYCSRACQAL 345

Query: 359 DWKLQHKAECAPLEMWPENDGDGGEADGDGEILNENDEEDVI 400
           DWKL+HKA CAP+E W  +DGD   A+G+G +     E+DVI
Sbjct: 346 DWKLRHKAACAPVERWLVDDGD---ANGEGAVAGAAAEDDVI 382

[Close]

BLAST of Clc08G17760 vs. TAIR 10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 479.9 bits (1234), Expect = 1.9e-135
Identity = 235/331 (71.00%), Postives = 272/331 (82.18%), Query Frame = 0


Query: 62  SDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLGRHSLVLSKASQRTLGIS 121
           +D  DS+PDDL+ISIL KL S++  P+DFI  L+TCKR   L  + +VLS+ S + + + 
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 122 AKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISCHAPALYSL 181
           A NWSE +HRFLK+CVDAG++EACY LGMIRFYCLQNRG+GASLMAKAAIS HAPALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 182 SVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFL 241
           +VIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN+ EGRRFL
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 242 VQANARELAAVLSSSTAAASRSWVTCNPHAHHRTAVGSSSECPLLSDFGCNVPAPEAHPA 301
           VQANARELAAVLSS   A S +W++ +              CPLLSDFGCNVPAPE HPA
Sbjct: 221 VQANARELAAVLSSGIQARS-TWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPA 280

Query: 302 SRFMAEWFALRGG-APGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWK 361
           +RF+A+WFA+RGG  PG GLRLCSH GCGRPETR+HEFRRCSVCG+VNYCSRACQALDWK
Sbjct: 281 NRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWK 340

Query: 362 LQHKAECAPLEMWPENDGDGGEA----DGDG 388
           L+HK +CAP++ W E +GDGGE     DG+G
Sbjct: 341 LRHKMDCAPVQRWLE-EGDGGEGNVQIDGNG 369

[Close]

BLAST of Clc08G17760 vs. TAIR 10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 397.9 bits (1021), Expect = 9.7e-111
Identity = 206/342 (60.23%), Postives = 246/342 (71.93%), Query Frame = 0


Query: 45  TRFYSSNSFKRNRFSSKSDFFDSLPDDLLISILSKLASSASSPSDFIKALITCKRFNNLG 104
           T        + N  ++ ++ F+ L DDL+ISIL KLA+SASSPSDF+  L TCKR N LG
Sbjct: 2   THLNKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLG 61

Query: 105 RHSLVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGAS 164
            H LVLSKA  +TL ++A+ WS+S+H+FLK CV+AGN++A Y LGMIRFYCLQN  SGAS
Sbjct: 62  LHPLVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGAS 121

Query: 165 LMAKAAISCHAPALYSLSVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCL 224
           LMAKAAI  HAPALYSLSVIQFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCL
Sbjct: 122 LMAKAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCL 181

Query: 225 QDGYGVCQNIMEGRRFLVQANARELAAVLSSSTAAASRSWVTCNPHAHHRTAVGSSSECP 284
           QDGYGV +++ EGRR L+QANARELA  L        RS++          ++ S  E  
Sbjct: 182 QDGYGVPRDVSEGRRLLIQANARELACSL--------RSYL----------SLKSGDENE 241

Query: 285 LLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSVC 344
            L+D    VP  E HP +RF+ EWF+        GLR+CSH GCGRPETR HEFRRCSVC
Sbjct: 242 TLTDLSV-VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVC 301

Query: 345 GIVNYCSRACQALDWKLQHKAECAPLEMW---PENDGDGGEA 384
           G VNYCSR CQALDW+ +HK EC PL++W       GD GEA
Sbjct: 302 GKVNYCSRGCQALDWRAKHKVECTPLDLWVAAAAEIGDDGEA 324

[Close]

BLAST of Clc08G17760 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 46.2 bits (108), Expect = 7.2e-05
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 340 RCSVCGIVNYCSRACQALDWKLQHKAECAPLE 372
           RCS C  V YCS  CQ + W++ HK EC P+E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of Clc08G17760 vs. TAIR 10
Match: AT1G17110.2 (ubiquitin-specific protease 15 )

HSP 1 Score: 46.2 bits (108), Expect = 7.2e-05
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 340 RCSVCGIVNYCSRACQALDWKLQHKAECAPLE 372
           RCS C  V YCS  CQ + W++ HK EC P+E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

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BLAST of Clc08G17760 vs. TAIR 10
Match: AT2G24640.1 (ubiquitin-specific protease 19 )

HSP 1 Score: 44.3 bits (103), Expect = 2.7e-04
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 328 CGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAEC 368
           CG+  T     ++CS C  V YCS ACQ  DWK  HK +C
Sbjct: 67  CGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKC 101

The following BLAST results are available for this feature:

BLAST of Clc08G17760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885404.1	9.2e-196	94.18	F-box protein At1g67340-like [Benincasa hispida]	[more]
XP_008444448.1	2.1e-192	91.40	PREDICTED: F-box protein At1g67340-like [Cucumis melo]	[more]
XP_004143042.1	4.6e-187	90.46	F-box protein At1g67340 [Cucumis sativus] >KGN62374.1 hypothetical protein Csa_0...	[more]
XP_023002802.1	2.1e-179	81.59	F-box protein At1g67340-like [Cucurbita maxima]	[more]
XP_022951094.1	1.2e-176	81.09	F-box protein At1g67340-like [Cucurbita moschata]	[more]

BLAST of Clc08G17760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF9	2.7e-134	71.00	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
Q9FK27	1.4e-109	60.23	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]
Q2YDC9	2.6e-04	30.17	Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1	[more]
Q16342	3.5e-04	34.09	Programmed cell death protein 2 OS=Homo sapiens OX=9606 GN=PDCD2 PE=1 SV=2	[more]

BLAST of Clc08G17760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BB38	1.0e-192	91.40	F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103487769 PE=4 SV=1	[more]
A0A0A0LMZ9	2.2e-187	90.46	MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351550 P...	[more]
A0A6J1KKI0	9.9e-180	81.59	F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111496556 PE=4 SV...	[more]
A0A6J1GHQ9	6.0e-177	81.09	F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111454044 PE=4 ...	[more]
F6HGA6	4.3e-151	79.53	MYND-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03...	[more]

BLAST of Clc08G17760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67340.1	1.9e-135	71.00	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	9.7e-111	60.23	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT1G17110.1	7.2e-05	53.13	ubiquitin-specific protease 15	[more]
AT1G17110.2	7.2e-05	53.13	ubiquitin-specific protease 15	[more]
AT2G24640.1	2.7e-04	47.50	ubiquitin-specific protease 19	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.2220		coord: 322..374 e-value: 3.2E-11 score: 44.8
None	No IPR available	GENE3D	1.20.1280.50		coord: 50..105 e-value: 4.0E-5 score: 25.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..402
None	No IPR available	PANTHER	PTHR46758:SF7	HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN	coord: 54..387
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 125..244
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 322..370
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 106..262 e-value: 9.9E-15 score: 56.3
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 328..367 e-value: 1.5E-7 score: 31.4
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 325..367 score: 10.9113
IPR044508	F-box protein At5g50450/At1g67340-like	PANTHER	PTHR46758	MYND DOMAIN-CONTAINING	coord: 54..387
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 59..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G17760.1	Clc08G17760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding