Clc08G17240 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G17240
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phytosulfokine-beta
Location	ClcChr08: 27530792 .. 27531906 (-)
RNA-Seq Expression	Clc08G17240
Synteny	Clc08G17240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAACGACAACTACCTTAAGATTTGTGGTTCGAATTCTCCAACTCTTATGCAGTTAAAAAAGAAAAAAAAAGAGACTTGTAATTTAACAAAAATATGAGCACATAATTTAATGGGATTTGAGGAAATATGGTAAAGTTTGTTGTACTAAAAAGACTACGAGACAATATATTTTCCTTCTAAGGTCCGCCATTTTTATATATTGAGAGACCAGAAAAGGAAAAAAAAAACGAACCATAATGAGCGTATAAGGTGTGGTGTGGCCAACGTTGAGAACAGCATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTAAGTTTCAAAAATCTCCCTTCAAAACTAATCCCCAATTTATCCATTATAGTTAATTTCATCCTTAATATCTCTTTAACTAGGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTGTTTGTTTTCCGGTTCGGCGCTTTACGAACGAACCGACGGCCCGGCCGGTTCGCGGTCCCCACGGTTTCTATAACAAGACTGAGTTAGGAATTGGAGCTGTTTACCATCAAATCAAATTTGTTATTTTGGGATATATTTTCTCTTTTTGTGGATAACTATTTTTTACCTGAAATTATTTTCAACTACTCACATGACATGTACATGTTGTTTGAAGAAAATCATCATTATTATTATTATT

mRNA sequence

CTCAACGACAACTACCTTAAGATTTGTGGTTCGAATTCTCCAACTCTTATGCAGTTAAAAAAGAAAAAAAAAGAGACTTGTAATTTAACAAAAATATGAGCACATAATTTAATGGGATTTGAGGAAATATGGTAAAGTTTGTTGTACTAAAAAGACTACGAGACAATATATTTTCCTTCTAAGGTCCGCCATTTTTATATATTGAGAGACCAGAAAAGGAAAAAAAAAACGAACCATAATGAGCGTATAAGGTGTGGTGTGGCCAACGTTGAGAACAGCATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTGTTTGTTTTCCGGTTCGGCGCTTTACGAACGAACCGACGGCCCGGCCGGTTCGCGGTCCCCACGGTTTCTATAACAAGACTGAGTTAGGAATTGGAGCTGTTTACCATCAAATCAAATTTGTTATTTTGGGATATATTTTCTCTTTTTGTGGATAACTATTTTTTACCTGAAATTATTTTCAACTACTCACATGACATGTACATGTTGTTTGAAGAAAATCATCATTATTATTATTATT

Coding sequence (CDS)

ATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGA

Protein sequence

MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRRTLEAHIDYIYTSDQMKP

Homology

[Close]

BLAST of Clc08G17240 vs. NCBI nr
Match: XP_023546620.1 (phytosulfokines-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-15
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSKL ALF IAAL+TM      SSEARPIAT +A S    NPV ++E     DG CEGR+
Sbjct: 1  MSKLAALFTIAALLTM------SSEARPIATLTATSAVIANPVVAEE--VRKDGPCEGRE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSD 82
          K+DCLIRRTLEAH DYIY+ D
Sbjct: 61 KDDCLIRRTLEAHTDYIYSGD 73

[Close]

BLAST of Clc08G17240 vs. NCBI nr
Match: KAA0060965.1 (phytosulfokines-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 3  KLPALFA-IAALVT-MSLIILPSSE-ARPIATFSAISLKPTNPVASQEAIT--HNDG-SC 62
          KL ALF  IAALVT MSLI++PSSE ARPI +      KP NP+ S+E +   +N+G SC
Sbjct: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSL----FKPQNPIVSRELVADHNNEGISC 63

Query: 63 EGRDKEDCLIRRTLEAHIDYIYTSDQMKP 86
          EG  KEDCLI+RTL+AHIDY+YT D  KP
Sbjct: 64 EGLGKEDCLIKRTLQAHIDYVYTCDPTKP 88

[Close]

BLAST of Clc08G17240 vs. NCBI nr
Match: KAG6598323.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Phytosulfokine [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 5.0e-11
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSKL ALF IAALV+MSL +LPSSEARPI T +A S    NPV   E +           
Sbjct: 1  MSKLAALFTIAALVSMSL-MLPSSEARPITTLTATSAVIANPVIVSEEVC---------- 60

Query: 61 KEDCLIRRTLEAHIDYIYTSD 82
          K+DCLIRRTLEAH DYIY+ D
Sbjct: 61 KDDCLIRRTLEAHTDYIYSGD 70

[Close]

BLAST of Clc08G17240 vs. NCBI nr
Match: KGN62431.1 (hypothetical protein Csa_018781 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 6.6e-11
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 10 IAALVT-MSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRR 69
          IAAL T MSLII+PSSE RPI +F  I    TN         +NDGSCEG  KEDCLIRR
Sbjct: 12 IAALATIMSLIIVPSSEGRPIPSFELIPEFATN--------HNNDGSCEGSGKEDCLIRR 71

Query: 70 TLEAHIDYIYTSD 82
          TL+AH DY+YT D
Sbjct: 72 TLQAHTDYVYTCD 76

[Close]

BLAST of Clc08G17240 vs. NCBI nr
Match: KAG6585714.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-10
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSKL ALF++ ALVTMSL  L SSEARPIAT +A SL   +      +   +D  CEG +
Sbjct: 1  MSKLVALFSVVALVTMSL--LSSSEARPIATSTATSLDLNHIAHQVVSEKGHDDVCEGGE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSD 82
           ++CL +RT+EAH DYIYT D
Sbjct: 61 TKECLAKRTVEAHTDYIYTDD 79

[Close]

BLAST of Clc08G17240 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 2  SKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITH--NDGSCEGR 61
          SK   L  IA L ++SL    +  ARP        L+P +   S   I    +D +CEG 
Sbjct: 3  SKAITLLLIALLFSLSL----AQAARP--------LQPADSTKSVHVIPEKVHDEACEGV 62

Query: 62 DKEDCLIRRTLEAHIDYIYTSD 82
           +E+CL+RRTL AH+DYIYT D
Sbjct: 63 GEEECLMRRTLTAHVDYIYTQD 72

[Close]

BLAST of Clc08G17240 vs. ExPASy Swiss-Prot
Match: Q9SZG4 (Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARP-IATFSAISLKPTNPVASQ--EAITHN--DGS 60
          M+ L  L  IA L+  +++   +  ARP  A F++ +  P + ++ +  E+  H     S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CEGRDKEDCLIRRTLEAHIDYIYT 80
          C+  D EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of Clc08G17240 vs. ExPASy TrEMBL
Match: A0A5A7V550 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001000 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 3  KLPALFA-IAALVT-MSLIILPSSE-ARPIATFSAISLKPTNPVASQEAIT--HNDG-SC 62
          KL ALF  IAALVT MSLI++PSSE ARPI +      KP NP+ S+E +   +N+G SC
Sbjct: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSL----FKPQNPIVSRELVADHNNEGISC 63

Query: 63 EGRDKEDCLIRRTLEAHIDYIYTSDQMKP 86
          EG  KEDCLI+RTL+AHIDY+YT D  KP
Sbjct: 64 EGLGKEDCLIKRTLQAHIDYVYTCDPTKP 88

[Close]

BLAST of Clc08G17240 vs. ExPASy TrEMBL
Match: A0A0A0LR23 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 10 IAALVT-MSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRR 69
          IAAL T MSLII+PSSE RPI +F  I    TN         +NDGSCEG  KEDCLIRR
Sbjct: 12 IAALATIMSLIIVPSSEGRPIPSFELIPEFATN--------HNNDGSCEGSGKEDCLIRR 71

Query: 70 TLEAHIDYIYTSD 82
          TL+AH DY+YT D
Sbjct: 72 TLQAHTDYVYTCD 76

[Close]

BLAST of Clc08G17240 vs. ExPASy TrEMBL
Match: A0A6J1BQV2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.0e-10
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   MSK-LPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGR 60
           MSK L ALFAIAAL+TMS+++  SS+ARPI TFSA S++  +P +      H DG  E  
Sbjct: 22  MSKQLAALFAIAALLTMSVLL--SSQARPITTFSANSVEIAHPDSKDR--VHEDGCDERA 81

Query: 61  DKEDCLIRRTLEAHIDYIYTSDQMKP 86
           + +DCL RRTLEAH DYIY S + KP
Sbjct: 82  EDQDCLNRRTLEAHTDYIY-SGETKP 102

[Close]

BLAST of Clc08G17240 vs. ExPASy TrEMBL
Match: A0A1U7X3S7 (Phytosulfokine-beta OS=Nicotiana sylvestris OX=4096 GN=LOC104230093 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSK  ALF +A L+  SL     S ARP +T      K     A  + + +++G CEG +
Sbjct: 1  MSKFSALFLVAILLCFSL----KSAARPDSTLMKAQFKD----ARDDKVENDEGICEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +EDCL RRT+EAHIDYIYT  +  P
Sbjct: 61 EEDCLKRRTMEAHIDYIYTQSKGHP 77

[Close]

BLAST of Clc08G17240 vs. ExPASy TrEMBL
Match: A0A1S4AR20 (Phytosulfokine-beta OS=Nicotiana tabacum OX=4097 GN=LOC107800365 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSK  ALF +A L+  +L     S ARP +T      K     A  + + +++G CEG +
Sbjct: 1  MSKFSALFLVAILLCFNL----KSAARPDSTLMKAQFKD----ARDDKVENDEGICEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +EDCL RRT+EAHIDYIYT  +  P
Sbjct: 61 EEDCLKRRTMEAHIDYIYTQSKGHP 77

[Close]

BLAST of Clc08G17240 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARP-IATFSAISLKPTNPVASQ--EAITHN--DGS 60
          M+ L  L  IA L+  +++   +  ARP  A F++ +  P + ++ +  E+  H     S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CEGRDKEDCLIRRTLEAHIDYIYT 80
          C+  D EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of Clc08G17240 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 43.5 bits (101), Expect = 9.8e-05
Identity = 33/92 (35.87%), Postives = 44/92 (47.83%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHN-------D 60
          M+ + AL  IA L+  +L+      ARP    S       +P   ++ I          D
Sbjct: 1  MANVSALLTIALLLCSTLM----CTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVD 60

Query: 61 GSCEGRDKEDCLIRRTLEAHIDYIYTSDQMKP 86
           +C G D EDCL+RRTL AH DYIYT  +  P
Sbjct: 61 ENC-GADDEDCLMRRTLVAHTDYIYTQKKKHP 87

[Close]

BLAST of Clc08G17240 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          M K   +F +A L+  +L     + A  +   +  +L   N V   E     + SC G  
Sbjct: 1  MGKFTTIFIMALLLCSTL-----TYAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIG 60

Query: 61 KEDCLIRRTLEAHIDYIYTSD 82
          +E+CLIRR+L  H DYIYT +
Sbjct: 61 EEECLIRRSLVLHTDYIYTQN 76

The following BLAST results are available for this feature:

BLAST of Clc08G17240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546620.1	7.5e-15	62.96	phytosulfokines-like [Cucurbita pepo subsp. pepo]	[more]
KAA0060965.1	2.4e-13	60.67	phytosulfokines-like [Cucumis melo var. makuwa]	[more]
KAG6598323.1	5.0e-11	59.26	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Ph...	[more]
KGN62431.1	6.6e-11	61.64	hypothetical protein Csa_018781 [Cucumis sativus]	[more]
KAG6585714.1	5.6e-10	54.32	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc08G17240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	6.6e-06	41.46	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9SZG4	9.6e-05	38.10	Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1	[more]

BLAST of Clc08G17240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V550	1.2e-13	60.67	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G...	[more]
A0A0A0LR23	3.2e-11	61.64	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1	[more]
A0A6J1BQV2	6.0e-10	55.81	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1	[more]
A0A1U7X3S7	2.1e-07	44.71	Phytosulfokine-beta OS=Nicotiana sylvestris OX=4096 GN=LOC104230093 PE=3 SV=1	[more]
A0A1S4AR20	4.8e-07	43.53	Phytosulfokine-beta OS=Nicotiana tabacum OX=4097 GN=LOC107800365 PE=3 SV=1	[more]

BLAST of Clc08G17240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37720.1	6.8e-06	38.10	phytosulfokine 6 precursor	[more]
AT2G22860.1	9.8e-05	35.87	phytosulfokine 2 precursor	[more]
AT3G49780.1	2.9e-04	33.33	phytosulfokine 4 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 47..82 e-value: 1.3E-11 score: 45.3
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..82
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G17240.1	Clc08G17240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity