Clc08G16700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G16700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	WUSCHEL-related homeobox 4
Location	ClcChr08: 27142506 .. 27143595 (-)
RNA-Seq Expression	Clc08G16700
Synteny	Clc08G16700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTGGTTTGGGAGGTGGGAAAATCTTTGTGTGTGTGTGTGTGTGTTGTGTATATAATAAGAGGTATTGGGTTTGATCCGATTCTTCACCATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGGTAACTAATTAACTATATTCATCACAATACCATTCGTCTTTTGACCTTGTTTTAAAAAAAAAAAAATAATAATAATAATAATAATAAAAAGATTTGTGCTGGTTTATGCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGTAGGCTTCAAATTATCTGCATGTCTTCCAATAATAATCATATCCTGTTCCGTATAAATTAATTATAACGGAATATTATATATTTTTTTAACTGCAGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGATCCAATTTTTGGAAATTAAAAAAAAAATTGCATCTTTTGCTATGATCATAAGTTGTTATGAATTAATCTGCTTTAAATTTTCTCTTTTTTTTTT

mRNA sequence

TTTTTTTTTGGTTTGGGAGGTGGGAAAATCTTTGTGTGTGTGTGTGTGTGTTGTGTATATAATAAGAGGTATTGGGTTTGATCCGATTCTTCACCATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGATCCAATTTTTGGAAATTAAAAAAAAAATTGCATCTTTTGCTATGATCATAAGTTGTTATGAATTAATCTGCTTTAAATTTTCTCTTTTTTTTTT

Coding sequence (CDS)

ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA

Protein sequence

MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR

Homology

[Close]

BLAST of Clc08G16700 vs. NCBI nr
Match: XP_038885673.1 (WUSCHEL-related homeobox 4 [Benincasa hispida])

HSP 1 Score: 451.8 bits (1161), Expect = 3.5e-123
Identity = 220/236 (93.22%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSD------TTTTTLTSFD 60
           MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQ  N  PTSD      TTTTTLTSFD
Sbjct: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQHQNHQPTSDNTTVTTTTTTTLTSFD 60

Query: 61  LKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSR 120
           LKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSR
Sbjct: 61  LKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSR 120

Query: 121 GMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP 180
           GMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP
Sbjct: 121 GMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPP 180

Query: 181 PIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEG-HDRTLELFPLHPER 230
           PIIP FHT E+DSPYKRKCLYWGFECLVED NGIMCKKE+G HDRTLELFPLHPER
Sbjct: 181 PIIPAFHTGEEDSPYKRKCLYWGFECLVED-NGIMCKKEDGDHDRTLELFPLHPER 235

[Close]

BLAST of Clc08G16700 vs. NCBI nr
Match: XP_008444600.1 (PREDICTED: WUSCHEL-related homeobox 4 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 212/230 (92.17%), Postives = 221/230 (96.09%), Query Frame = 0


Query: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-HNQHPTSDTTTTTLTSFDLKTFI 60
           MVL+MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ  + + T+ TTTTTLT+FDLKTFI
Sbjct: 1   MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFI 60

Query: 61  KPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP 120
           KPDCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP
Sbjct: 61  KPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP 120

Query: 121 NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPT 180
           NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP 
Sbjct: 121 NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPA 180

Query: 181 FHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           FHT ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 FHTGDEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 229

[Close]

BLAST of Clc08G16700 vs. NCBI nr
Match: XP_004142872.1 (WUSCHEL-related homeobox 4 [Cucumis sativus] >KGN62487.1 hypothetical protein Csa_018691 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 3.6e-120
Identity = 215/232 (92.67%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSD---TTTTTLTSFDLKT 60
           MVL+MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ    PTSD   TTTTTLT+FDLKT
Sbjct: 1   MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ----PTSDNTTTTTTTLTTFDLKT 60

Query: 61  FIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR 120
           FIKPDCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR
Sbjct: 61  FIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR 120

Query: 121 TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII 180
           TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII
Sbjct: 121 TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII 180

Query: 181 PTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           P FHT E+DSPYKRKCLYWGFECLVED NG+MCKKEE HDRTLELFPLHPER
Sbjct: 181 PAFHTGEEDSPYKRKCLYWGFECLVED-NGLMCKKEEDHDRTLELFPLHPER 227

[Close]

BLAST of Clc08G16700 vs. NCBI nr
Match: KAA0060918.1 (WUSCHEL-related homeobox 4 [Cucumis melo var. makuwa])

HSP 1 Score: 438.0 bits (1125), Expect = 5.2e-119
Identity = 212/228 (92.98%), Postives = 217/228 (95.18%), Query Frame = 0


Query: 5   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSD---TTTTTLTSFDLKTFIKP 64
           MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ    PTSD   TTTTTLT+FDLKTFIKP
Sbjct: 1   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ----PTSDNTTTTTTTLTTFDLKTFIKP 60

Query: 65  DCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA 124
           DCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA
Sbjct: 61  DCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA 120

Query: 125 QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFH 184
           QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP FH
Sbjct: 121 QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFH 180

Query: 185 TAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           T ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 TGDEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 223

[Close]

BLAST of Clc08G16700 vs. NCBI nr
Match: ADN33723.1 (homeodomain transcription factor [Cucumis melo subsp. melo])

HSP 1 Score: 438.0 bits (1125), Expect = 5.2e-119
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 5   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-HNQHPTSDTTTTTLTSFDLKTFIKPDC 64
           MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ  + + T+ TTTTTLT+FDLKTFIKPDC
Sbjct: 1   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFIKPDC 60

Query: 65  GPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ 124
           GPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ
Sbjct: 61  GPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ 120

Query: 125 IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTA 184
           IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP FHT 
Sbjct: 121 IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTG 180

Query: 185 EDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 DEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 225

[Close]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot
Match: Q6X7J9 (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.2e-55
Identity = 134/262 (51.15%), Postives = 154/262 (58.78%), Query Frame = 0


Query: 5   MKVHQFARGF---WDE----PSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKT 64
           MKVH+F+ GF   WD+     SLSL CKRLRPLAPKL      P S ++  T  +FDLK 
Sbjct: 1   MKVHEFSNGFSSSWDQHDSTSSLSLSCKRLRPLAPKLSGSPPSPPSSSSGVTSATFDLKN 60

Query: 65  FIKPD-CGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGM 124
           FI+PD  GP K     +H +D           +ETHPGGTRWNPTQEQIGILEMLY  GM
Sbjct: 61  FIRPDQTGPTKF----EHKRDPPHQ-------LETHPGGTRWNPTQEQIGILEMLYKGGM 120

Query: 125 RTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSL-------------- 184
           RTPNAQQIEHIT QLG YGKIEGKNVFYWFQNHKARERQKQKRN+L              
Sbjct: 121 RTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKRNNLISLSCQSSFTTTGV 180

Query: 185 ---GLPHSPRTPPPPPII--PTFHTAE--DDSPYKRKCLYWGFECL-VEDHNG------I 231
               +    RT     I+  P     E  +++ YKR C  WGFE L +E+          
Sbjct: 181 FNPSVTMKTRTSSSLDIMREPMVEKEELVEENEYKRTCRSWGFENLEIENRRNKNSSTMA 240

[Close]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot
Match: Q25AM2 (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-28
Identity = 90/229 (39.30%), Postives = 116/229 (50.66%), Query Frame = 0


Query: 18  PSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKD 77
           P+ S  C  LRPLAPK+                          P+  PRK+ +  D    
Sbjct: 39  PAFSFKC--LRPLAPKIS------------------------LPE--PRKMIAPPDFVVP 98

Query: 78  SSSSSSSLQTGVETHP--GGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYG 137
            + ++S L       P  G TRWNP+ EQI +LEMLY  GMRTPN+ QIE IT +LG YG
Sbjct: 99  RARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYG 158

Query: 138 KIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSP------- 197
           +IEGKNVFYWFQNHKARERQKQKR +L       +   P ++P       ++P       
Sbjct: 159 RIEGKNVFYWFQNHKARERQKQKRAAL----LTLSTLDPSLLPATANETKEAPEKKEKDV 218

Query: 198 ------YKRKCLYWGFECLVEDHNGIMCKKEEG---HDRTLELFPLHPE 229
                  KR+C  WG      D + ++  +  G    + TLELFPLHP+
Sbjct: 219 EDGLASCKRRCKAWGDG--AGDGDAVVATEAAGGCTDEVTLELFPLHPQ 233

[Close]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot
Match: Q7XTV3 (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX4 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-28
Identity = 90/229 (39.30%), Postives = 116/229 (50.66%), Query Frame = 0


Query: 18  PSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKD 77
           P+ S  C  LRPLAPK+                          P+  PRK+ +  D    
Sbjct: 39  PAFSFKC--LRPLAPKIS------------------------LPE--PRKMIAPPDFVVP 98

Query: 78  SSSSSSSLQTGVETHP--GGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYG 137
            + ++S L       P  G TRWNP+ EQI +LEMLY  GMRTPN+ QIE IT +LG YG
Sbjct: 99  RARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYG 158

Query: 138 KIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSP------- 197
           +IEGKNVFYWFQNHKARERQKQKR +L       +   P ++P       ++P       
Sbjct: 159 RIEGKNVFYWFQNHKARERQKQKRAAL----LTLSTLDPSLLPATANETKEAPEKKEKDV 218

Query: 198 ------YKRKCLYWGFECLVEDHNGIMCKKEEG---HDRTLELFPLHPE 229
                  KR+C  WG      D + ++  +  G    + TLELFPLHP+
Sbjct: 219 EDGLASCKRRCKAWGDG--AGDGDAVVATEAAGGCTDEVTLELFPLHPQ 233

[Close]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot
Match: A2WWU7 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 97  RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQK 156
           RW PT+EQI +LE LY +G+RTP A+QI+ ITA+L  +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 44  RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQK 103

Query: 157 QKRNSLG-LPHSPRTPPPPPII 178
           QK+ S        R PPP P++
Sbjct: 104 QKQQSFDYFSKLFRRPPPLPVL 125

[Close]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot
Match: Q8LR86 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 97  RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQK 156
           RW PT+EQI +LE LY +G+RTP A+QI+ ITA+L  +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 44  RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQK 103

Query: 157 QKRNSLG-LPHSPRTPPPPPII 178
           QK+ S        R PPP P++
Sbjct: 104 QKQQSFDYFSKLFRRPPPLPVL 125

[Close]

BLAST of Clc08G16700 vs. ExPASy TrEMBL
Match: A0A1S3BBG0 (WUSCHEL-related homeobox 4 OS=Cucumis melo OX=3656 GN=LOC103487871 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.0e-121
Identity = 212/230 (92.17%), Postives = 221/230 (96.09%), Query Frame = 0


Query: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-HNQHPTSDTTTTTLTSFDLKTFI 60
           MVL+MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ  + + T+ TTTTTLT+FDLKTFI
Sbjct: 1   MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFI 60

Query: 61  KPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP 120
           KPDCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP
Sbjct: 61  KPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTP 120

Query: 121 NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPT 180
           NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP 
Sbjct: 121 NAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPA 180

Query: 181 FHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           FHT ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 FHTGDEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 229

[Close]

BLAST of Clc08G16700 vs. ExPASy TrEMBL
Match: A0A0A0LNZ2 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356610 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.7e-120
Identity = 215/232 (92.67%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSD---TTTTTLTSFDLKT 60
           MVL+MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ    PTSD   TTTTTLT+FDLKT
Sbjct: 1   MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ----PTSDNTTTTTTTLTTFDLKT 60

Query: 61  FIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR 120
           FIKPDCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR
Sbjct: 61  FIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMR 120

Query: 121 TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII 180
           TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII
Sbjct: 121 TPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPII 180

Query: 181 PTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           P FHT E+DSPYKRKCLYWGFECLVED NG+MCKKEE HDRTLELFPLHPER
Sbjct: 181 PAFHTGEEDSPYKRKCLYWGFECLVED-NGLMCKKEEDHDRTLELFPLHPER 227

[Close]

BLAST of Clc08G16700 vs. ExPASy TrEMBL
Match: A0A5A7V042 (WUSCHEL-related homeobox 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00510 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-119
Identity = 212/228 (92.98%), Postives = 217/228 (95.18%), Query Frame = 0


Query: 5   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSD---TTTTTLTSFDLKTFIKP 64
           MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ    PTSD   TTTTTLT+FDLKTFIKP
Sbjct: 1   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ----PTSDNTTTTTTTLTTFDLKTFIKP 60

Query: 65  DCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA 124
           DCGPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA
Sbjct: 61  DCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNA 120

Query: 125 QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFH 184
           QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP FH
Sbjct: 121 QQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFH 180

Query: 185 TAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           T ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 TGDEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 223

[Close]

BLAST of Clc08G16700 vs. ExPASy TrEMBL
Match: E5GB81 (Homeodomain transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-119
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 5   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ-HNQHPTSDTTTTTLTSFDLKTFIKPDC 64
           MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQ  + + T+ TTTTTLT+FDLKTFIKPDC
Sbjct: 1   MKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFIKPDC 60

Query: 65  GPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ 124
           GPRK GSSHDH+KDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ
Sbjct: 61  GPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQ 120

Query: 125 IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTA 184
           IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIP FHT 
Sbjct: 121 IEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTG 180

Query: 185 EDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 230
           ++DSPYKRKCLYWGFECLVED NG+MCKKEEGHDRTLELFPLHPER
Sbjct: 181 DEDSPYKRKCLYWGFECLVED-NGLMCKKEEGHDRTLELFPLHPER 225

[Close]

BLAST of Clc08G16700 vs. ExPASy TrEMBL
Match: A0A6J1HCY5 (WUSCHEL-related homeobox 4-like OS=Cucurbita moschata OX=3662 GN=LOC111462837 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.4e-109
Identity = 206/241 (85.48%), Postives = 217/241 (90.04%), Query Frame = 0


Query: 4   SMKVHQFARGFWDEPSLSLGCKRLRPLAPKL--QQHNQ--HPTS-----DTTTTTLTSFD 63
           SMKVHQFARGFWDEPSLSLGCKRLRPLAPKL  QQH Q  HP+S     +TTTTTLT+ D
Sbjct: 4   SMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQHQQQRHPSSSSSDHNTTTTTLTTLD 63

Query: 64  LKTFIKPDCGPRKLGSSHDHNK--DSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLY 123
           LKTFI+PDCGPRKLGSSHDHNK   SSSSSSS QT VETHPGGTRWNPTQEQIGILEMLY
Sbjct: 64  LKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQTAVETHPGGTRWNPTQEQIGILEMLY 123

Query: 124 SRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPP 183
           SRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRT P
Sbjct: 124 SRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRT-P 183

Query: 184 PPPIIPTFHTA---EDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPER 231
           PPPI+PTFH +   E+DSPYK+KCLYWGFECLVE HNGI+CK+E+G DRTLELFPLHPE 
Sbjct: 184 PPPILPTFHPSFPGEEDSPYKKKCLYWGFECLVE-HNGILCKREDG-DRTLELFPLHPEG 241

[Close]

BLAST of Clc08G16700 vs. TAIR 10
Match: AT1G46480.1 (WUSCHEL related homeobox 4 )

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-56
Identity = 134/262 (51.15%), Postives = 154/262 (58.78%), Query Frame = 0


Query: 5   MKVHQFARGF---WDE----PSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKT 64
           MKVH+F+ GF   WD+     SLSL CKRLRPLAPKL      P S ++  T  +FDLK 
Sbjct: 1   MKVHEFSNGFSSSWDQHDSTSSLSLSCKRLRPLAPKLSGSPPSPPSSSSGVTSATFDLKN 60

Query: 65  FIKPD-CGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGM 124
           FI+PD  GP K     +H +D           +ETHPGGTRWNPTQEQIGILEMLY  GM
Sbjct: 61  FIRPDQTGPTKF----EHKRDPPHQ-------LETHPGGTRWNPTQEQIGILEMLYKGGM 120

Query: 125 RTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSL-------------- 184
           RTPNAQQIEHIT QLG YGKIEGKNVFYWFQNHKARERQKQKRN+L              
Sbjct: 121 RTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKRNNLISLSCQSSFTTTGV 180

Query: 185 ---GLPHSPRTPPPPPII--PTFHTAE--DDSPYKRKCLYWGFECL-VEDHNG------I 231
               +    RT     I+  P     E  +++ YKR C  WGFE L +E+          
Sbjct: 181 FNPSVTMKTRTSSSLDIMREPMVEKEELVEENEYKRTCRSWGFENLEIENRRNKNSSTMA 240

[Close]

BLAST of Clc08G16700 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-21
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 23  GCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSS 82
           G ++LRPL P+L      PT+   T +   F++              ++  + ++    +
Sbjct: 16  GGRKLRPLIPRL---TSCPTAAVNTNSDHRFNMAVVTM---------TAEQNKRELMMLN 75

Query: 83  SSLQTGVETHPG---GTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEG 142
           S  Q     HP     +RWNPT +Q+ +LE LY +G RTP+A  I+ ITAQL  YGKIEG
Sbjct: 76  SEPQ-----HPPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEG 135

Query: 143 KNVFYWFQNHKARERQKQKR 160
           KNVFYWFQNHKARERQK++R
Sbjct: 136 KNVFYWFQNHKARERQKRRR 138

[Close]

BLAST of Clc08G16700 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-20
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 94  GGT-----RWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQN 153
           GGT     RWNPT EQ+ IL  L+  G+RTP   QI+ I+ +L  YGKIE KNVFYWFQN
Sbjct: 16  GGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQN 75

Query: 154 HKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGI 213
           HKARERQK+++ S+   H    P    +   F  +E+D                      
Sbjct: 76  HKARERQKRRKISIDFDHHHHQPSTRDV---FEISEED---------------------- 127

Query: 214 MCKKEEGHDRTLELFPLH 227
            C++EE    TL+LFP++
Sbjct: 136 -CQEEEKVIETLQLFPVN 127

[Close]

BLAST of Clc08G16700 vs. TAIR 10
Match: AT5G59340.1 (WUSCHEL related homeobox 2 )

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 96  TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQ 155
           +RWNPT++QI +LE LY  G+RTP+A QI+ IT +L  YG IEGKNVFYWFQNHKAR+RQ
Sbjct: 13  SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQ 72

Query: 156 KQKRNSLG-----LPHSPRTPPPPP 176
           KQK+  +      L  + R   PPP
Sbjct: 73  KQKQERMAYFNRLLHKTSRFFYPPP 97

[Close]

BLAST of Clc08G16700 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 96  TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQ 155
           TRW PT EQ+ ILE +Y  G+RTPNA QI+ ITA L  YG+IEGKNVFYWFQNHKAR+RQ
Sbjct: 7   TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQ 66

Query: 156 KQKR 160
           K ++
Sbjct: 67  KLRK 70

The following BLAST results are available for this feature:

BLAST of Clc08G16700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885673.1	3.5e-123	93.22	WUSCHEL-related homeobox 4 [Benincasa hispida]	[more]
XP_008444600.1	1.2e-120	92.17	PREDICTED: WUSCHEL-related homeobox 4 [Cucumis melo]	[more]
XP_004142872.1	3.6e-120	92.67	WUSCHEL-related homeobox 4 [Cucumis sativus] >KGN62487.1 hypothetical protein Cs...	[more]
KAA0060918.1	5.2e-119	92.98	WUSCHEL-related homeobox 4 [Cucumis melo var. makuwa]	[more]
ADN33723.1	5.2e-119	92.48	homeodomain transcription factor [Cucumis melo subsp. melo]	[more]

BLAST of Clc08G16700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X7J9	7.2e-55	51.15	WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1	[more]
Q25AM2	4.4e-28	39.30	WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 S...	[more]
Q7XTV3	4.4e-28	39.30	WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX4 PE=2...	[more]
A2WWU7	3.0e-21	60.98	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 S...	[more]
Q8LR86	3.0e-21	60.98	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX5 PE=2...	[more]

BLAST of Clc08G16700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBG0	6.0e-121	92.17	WUSCHEL-related homeobox 4 OS=Cucumis melo OX=3656 GN=LOC103487871 PE=4 SV=1	[more]
A0A0A0LNZ2	1.7e-120	92.67	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356610 PE...	[more]
A0A5A7V042	2.5e-119	92.98	WUSCHEL-related homeobox 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
E5GB81	2.5e-119	92.48	Homeodomain transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1HCY5	2.4e-109	85.48	WUSCHEL-related homeobox 4-like OS=Cucurbita moschata OX=3662 GN=LOC111462837 PE...	[more]

BLAST of Clc08G16700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G46480.1	5.1e-56	51.15	WUSCHEL related homeobox 4	[more]
AT3G18010.1	2.4e-21	42.86	WUSCHEL related homeobox 1	[more]
AT3G11260.1	1.2e-20	41.30	WUSCHEL related homeobox 5	[more]
AT5G59340.1	2.0e-20	57.65	WUSCHEL related homeobox 2	[more]
AT2G28610.1	4.5e-20	68.75	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 93..160 e-value: 1.0E-7 score: 41.6
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 96..155 e-value: 9.7E-19 score: 67.0
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 91..156 score: 10.187267
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 96..157 e-value: 4.24382E-6 score: 41.0749
None	No IPR available	GENE3D	1.10.10.60		coord: 95..162 e-value: 6.9E-10 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..102
IPR044186	WUSCHEL-related homeobox 4	PANTHER	PTHR47716	WUSCHEL-RELATED HOMEOBOX 4	coord: 5..230
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 92..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G16700.1	Clc08G16700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0010067	procambium histogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity