Clc08G16620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G16620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 27099557 .. 27100100 (-)
RNA-Seq Expression	Clc08G16620
Synteny	Clc08G16620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGGTGAACAGTAAACAACTACATGTGATATATTTATGAAAAACAATATAACAAGCAAGAAAAAAAAACTCGATATACAGATCTCGATCTAGAAAGGAATATGAGAAGACCAACAGACAAGTCTGACTGACTGACTGAAGTCCGTGGAATCGGAAATTAATCAAATAGTGACGGATCAGATCCGAGAAATGGCACAAAGAAAGACGAAAAAGGATCGGTTTTACCAAAGACGAACCGTTAAGAAAGTGAGCGTATGAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

mRNA sequence

ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

Coding sequence (CDS)

ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

Protein sequence

MNMRRPRDDNRQFTTSEIPSRASTAELQQQLRTNGSEGEIKSDRERNDGSKRKKEEYTLEKINGREGIWEESAAATMSRWKKAKISGGDRVSRLS

Homology

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BLAST of Clc08G16620 vs. ExPASy TrEMBL
Match: A0A0A0LL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356670 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.4e-04
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 39 EIKSDRERNDGSKRKKEEYT--LEKINGREGIWEESAAATMSRWKKAKISGGDRVSR 94
          +I   R R     R  E  T   EK +GREGI EESAAATMSRW KA ISGG+R+SR
Sbjct: 12 QIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANISGGERLSR 68

The following BLAST results are available for this feature:

BLAST of Clc08G16620 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G16620 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G16620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL84	9.4e-04	57.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356670 PE=4 SV=1	[more]

BLAST of Clc08G16620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G16620.2	Clc08G16620.2	mRNA