Clc08G16350 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G16350
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag
Location	ClcChr08: 26870179 .. 26871680 (+)
RNA-Seq Expression	Clc08G16350
Synteny	Clc08G16350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAGAAAAAGGATTGGTGTTGAGAAATTTCATAAAATTCCACTTTCTTTATTTTAGTTTATTTTAAGTTTATTTTATTTAGTTGTTTTAATTACTTTTATATTATTTAATTATTTAATTATTTTATTATTTTAATATTATAATTTATCGGTTTTCGTGCTCCCGTTTTTCCGTCATTTTGCTCCTCAATTTTACAACACGTTATCAGCACGAGCTCTTGTCGTTTTCCTGTTGAAGGTACCTCTGAAGGTATGTCATTTTCTCTTTATTATAATTAGTAAATTAAACGTTGTTTTGCATGTTTAATATATATATTAAATTGCTAATATAAATATAATTCTTTGTGATAGTGTTATCATGGCAAATCTTACAAAATAGAATTTGCAGCCCTTGACATCAATGGAAATAATTATTTGTCATGGGTGCTTGATGCTGAAATACATCTCGATGCCATGAACCTGGAAGAAACAATTAAGGAAGTAAATGCAACATCCATTCAGGAAAAAGCAAAAGCTATAATCTTCCTTCGCCATCATCTTCACAAGGGATTAAAGATGAAATATTTAACAATAAAAGATCCATGTATCTTGTGGAAGAATTTAAAACAGAGATATGATCATCAGAAAACAATCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTCCAAGATTTCAAATCAGTAAGTGATTACAACTCCGCGTTATTTAAAATCAGTTCAAAATTATTATTGTGCGGAGAGAAAATTACTGATGCGGATATGTTGGAGAAGACATTTTCTACATTCCATGCCTCGAATATGCTCCTGCAGCAGCAATATCGAGAGAAAGGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGCGGCTGAACAAAATAATGAGCTATTAATGAAGAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAAGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGACCGTGACAGAGGAAGAAATAGTTATTATTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGTTCCACAAGGTAAAAATTCAAAAGATGATGAGCATAAATGCTTCCAATGCGGGATGACTGGGCACTGGTCTCGTGTTTGCCGTACATCAAAACACCTAGTTGATCTCTATCAAGCTTCCCTGAAGTAAAAAGTGAAAAATGTGGAAGCAAATTTTGCACACCAAGATAATGATATATTTGACCAATCCAATATGACAAATTTGGATGTGGCGGACTTCTTTGAATCTCCTGAAGAGAAAGTCAGCACAAATGATGGCACAATGTTTCTTTTGATTTTGAGAATATGTAGAATTGTTTTATCTATCTTTCATTTTTTTAGTTGAACCTTGTATTACAAGTTTTGTTTTCTTATTGTAATTATCTTGTTTAAATGAA

mRNA sequence

AAATAAGAAAAAGGATTGGTGTTGAGAAATTTCATAAAATTCCACTTTCTTTATTTTAGTTTATTTTAAGTTTATTTTATTTAGTTGTTTTAATTACTTTTATATTATTTAATTATTTAATTATTTTATTATTTTAATATTATAATTTATCGGTTTTCGTGCTCCCGTTTTTCCGTCATTTTGCTCCTCAATTTTACAACACGTTATCAGCACGAGCTCTTGTCGTTTTCCTGTTGAAGGTACCTCTGAAGTGTTATCATGGCAAATCTTACAAAATAGAATTTGCAGCCCTTGACATCAATGGAAATAATTATTTGTCATGGGTGCTTGATGCTGAAATACATCTCGATGCCATGAACCTGGAAGAAACAATTAAGGAAGTAAATGCAACATCCATTCAGGAAAAAGCAAAAGCTATAATCTTCCTTCGCCATCATCTTCACAAGGGATTAAAGATGAAATATTTAACAATAAAAGATCCATGTATCTTGTGGAAGAATTTAAAACAGAGATATGATCATCAGAAAACAATCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTCCAAGATTTCAAATCAGTAAGTGATTACAACTCCGCGTTATTTAAAATCAGTTCAAAATTATTATTGTGCGGAGAGAAAATTACTGATGCGGATATGTTGGAGAAGACATTTTCTACATTCCATGCCTCGAATATGCTCCTGCAGCAGCAATATCGAGAGAAAGGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGCGGCTGAACAAAATAATGAGCTATTAATGAAGAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAAGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGACCGTGACAGAGGAAGAAATAGTTATTATTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGTTCCACAAGGTAAAAATTCAAAAGATGATGAGCATAAATGCTTCCAATGCGGGATGACTGGGCACTGGTCTCGTGTTTGCCGTACATCAAAACACCTAGTTGATCTCTATCAAGCTTCCCTGAAGTAAAAAGTGAAAAATGTGGAAGCAAATTTTGCACACCAAGATAATGATATATTTGACCAATCCAATATGACAAATTTGGATGTGGCGGACTTCTTTGAATCTCCTGAAGAGAAAGTCAGCACAAATGATGGCACAATGTTTCTTTTGATTTTGAGAATATGTAGAATTGTTTTATCTATCTTTCATTTTTTTAGTTGAACCTTGTATTACAAGTTTTGTTTTCTTATTGTAATTATCTTGTTTAAATGAA

Coding sequence (CDS)

ATGAACCTGGAAGAAACAATTAAGGAAGTAAATGCAACATCCATTCAGGAAAAAGCAAAAGCTATAATCTTCCTTCGCCATCATCTTCACAAGGGATTAAAGATGAAATATTTAACAATAAAAGATCCATGTATCTTGTGGAAGAATTTAAAACAGAGATATGATCATCAGAAAACAATCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTCCAAGATTTCAAATCAGTAAGTGATTACAACTCCGCGTTATTTAAAATCAGTTCAAAATTATTATTGTGCGGAGAGAAAATTACTGATGCGGATATGTTGGAGAAGACATTTTCTACATTCCATGCCTCGAATATGCTCCTGCAGCAGCAATATCGAGAGAAAGGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGCGGCTGAACAAAATAATGAGCTATTAATGAAGAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAAGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGACCGTGACAGAGGAAGAAATAGTTATTATTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGTTCCACAAGGTAAAAATTCAAAAGATGATGAGCATAAATGCTTCCAATGCGGGATGACTGGGCACTGGTCTCGTGTTTGCCGTACATCAAAACACCTAGTTGATCTCTATCAAGCTTCCCTGAAGTAA

Protein sequence

MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTIILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNMLLQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRGRGRGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQCGMTGHWSRVCRTSKHLVDLYQASLK

Homology

[Close]

BLAST of Clc08G16350 vs. NCBI nr
Match: WP_217833168.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 377.5 bits (968), Expect = 9.6e-101
Identity = 194/216 (89.81%), Postives = 199/216 (92.13%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL ETIKE NATSIQEKAKA+IFLRHHLH+ LKM+YLTIKD  ILWKNLKQRYDHQKT+
Sbjct: 33  MNLGETIKEGNATSIQEKAKAMIFLRHHLHERLKMEYLTIKDLSILWKNLKQRYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDA MLE TFSTFHASNML
Sbjct: 93  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDAYMLENTFSTFHASNML 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           +QQQYREKGFKQYSELISCLL AEQNNELLMKNHESRPTGTTPFPEVNAVNFNN      
Sbjct: 153 MQQQYREKGFKQYSELISCLLVAEQNNELLMKNHESRPTGTTPFPEVNAVNFNN------ 212

Query: 181 RGRGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTT 217
           RGRGRGRGRGRDR RGRNSYYFRG HSNH NFKRTT
Sbjct: 213 RGRGRGRGRGRDRGRGRNSYYFRGSHSNHPNFKRTT 242

[Close]

BLAST of Clc08G16350 vs. NCBI nr
Match: XP_028757260.1 (uncharacterized protein LOC114716420 [Prosopis alba] >XP_028762828.1 uncharacterized protein LOC114721175 [Prosopis alba] >XP_028782931.1 uncharacterized protein LOC114739029 [Prosopis alba] >XP_028805292.1 uncharacterized protein LOC114760196 [Prosopis alba])

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-97
Identity = 187/264 (70.83%), Postives = 216/264 (81.82%), Query Frame = 0


Query: 3   LEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTIIL 62
           L +TIK  N  S QEKAKA+IFLRHHLH+GLKM+YLTIKDP +LW NLK+RYDHQKT+IL
Sbjct: 35  LGDTIKAENKASSQEKAKAMIFLRHHLHEGLKMEYLTIKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNMLLQ 122
           PKARYEWMHLRLQDFKSVS+YNSA+F+ISS+L LCGEK+TD DMLEKTFSTFHASN+LLQ
Sbjct: 95  PKARYEWMHLRLQDFKSVSEYNSAIFRISSQLKLCGEKVTDEDMLEKTFSTFHASNVLLQ 154

Query: 123 QQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRGRG 182
           QQYREKGFK+YSELISCLL AEQNNELLMKNHESRPTG+TPFPE N V     G +RGRG
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMKNHESRPTGSTPFPEANVV---VNGPTRGRG 214

Query: 183 RGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQCG 242
           RG GR RGR  DRGR   + RGG +   ++ + T+ND+++ +   G N+   E  C++CG
Sbjct: 215 RGHGRARGRRIDRGRGRGHNRGGSN---SYSKRTKNDENRKRKTSGSNN-HSEDSCYRCG 274

Query: 243 MTGHWSRVCRTSKHLVDLYQASLK 267
             GHWSR CRT KHLVDLYQ SLK
Sbjct: 275 GNGHWSRTCRTPKHLVDLYQESLK 291

[Close]

BLAST of Clc08G16350 vs. NCBI nr
Match: XP_028801898.1 (uncharacterized protein LOC114757071 [Prosopis alba])

HSP 1 Score: 363.6 bits (932), Expect = 1.4e-96
Identity = 185/264 (70.08%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 3   LEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTIIL 62
           L +TIK  N  S QEKAKA+IFLRHHLH+GLKM+YLTIKDP +LW NLK+RYDHQKT+IL
Sbjct: 35  LGDTIKAENKASSQEKAKAMIFLRHHLHEGLKMEYLTIKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNMLLQ 122
           PKARYEWMHLRLQDFKSVS+YNSA+F+ISS+L LCGEK+TD DMLEKTFSTFH SN+LLQ
Sbjct: 95  PKARYEWMHLRLQDFKSVSEYNSAIFRISSQLKLCGEKVTDEDMLEKTFSTFHVSNVLLQ 154

Query: 123 QQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRGRG 182
           QQYREKGFK+YSELISCLL AEQNNELLMKNHESRPTG+TPFP+ N V     G +RGRG
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMKNHESRPTGSTPFPKANVV---VNGPTRGRG 214

Query: 183 RGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQCG 242
           RG GR RGR  DRGR   + RGG +   ++ + T+ND+++ +   G N+   E  C++CG
Sbjct: 215 RGHGRARGRRIDRGRGRGHNRGGSN---SYSKRTKNDENRKRKTSGSNN-HSEDSCYRCG 274

Query: 243 MTGHWSRVCRTSKHLVDLYQASLK 267
             GHWSR CRT KHLVDLYQ SLK
Sbjct: 275 GNGHWSRTCRTPKHLVDLYQESLK 291

[Close]

BLAST of Clc08G16350 vs. NCBI nr
Match: XP_028755102.1 (uncharacterized protein LOC114714527 [Prosopis alba])

HSP 1 Score: 360.9 bits (925), Expect = 9.3e-96
Identity = 187/265 (70.57%), Postives = 215/265 (81.13%), Query Frame = 0


Query: 3   LEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTIIL 62
           L +TIKE N  S Q+KAKA+IFLRHHLH+GLK++YLT+KDP +LW NLK+RYDHQKT+IL
Sbjct: 35  LGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTVKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNMLLQ 122
           PKARY+WMHLRLQDFKSV +YNSA+F+ISS+L LCGEKITD DMLEKTFSTFHASN+LLQ
Sbjct: 95  PKARYDWMHLRLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQ 154

Query: 123 QQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAV-NFNNRGRSRGR 182
           QQYREKGFK+YSELISCLL AEQNNELLM+NHESRPTG+TPFPEVN V   + RG  RGR
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEVNVVATESTRGHGRGR 214

Query: 183 GRGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQC 242
           GRGRGRGRGR R RG       GG S+    ++   ND+H  K   G N+   E+ C++C
Sbjct: 215 GRGRGRGRGRGRGRG-------GGRSH----QKWANNDEHHQKESSG-NNNHVENLCYRC 274

Query: 243 GMTGHWSRVCRTSKHLVDLYQASLK 267
           G  GHWSR CRT KHLVDLYQ SLK
Sbjct: 275 GGKGHWSRTCRTPKHLVDLYQESLK 287

[Close]

BLAST of Clc08G16350 vs. NCBI nr
Match: XP_028787995.1 (uncharacterized protein LOC114743980 [Prosopis alba])

HSP 1 Score: 360.1 bits (923), Expect = 1.6e-95
Identity = 187/264 (70.83%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 3   LEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTIIL 62
           L +TIKE N  S Q+KAKA+IFLRHHLH+GLK++YLTIKDP +LW NLK+RYDHQKT+IL
Sbjct: 35  LGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTIKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNMLLQ 122
           PKARY+WMHLRLQDFKSV +YNSA+F+ISS+L LCGEKITD DMLEKTFSTFHASN+LLQ
Sbjct: 95  PKARYDWMHLRLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQ 154

Query: 123 QQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRGRG 182
           QQYREKGFK+YSELISCLL AEQNNELLM+NHESRPTG+TPFPEVN V   +   +RG G
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEVNVVATES---TRGHG 214

Query: 183 RGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQCG 242
           RGRGRGRGR R RGR     RGG  +H   ++   ND+H  K   G N+   E+ C++CG
Sbjct: 215 RGRGRGRGRGRGRGRG----RGGDRSH---QKWANNDEHHQKESSG-NNNHVENLCYRCG 274

Query: 243 MTGHWSRVCRTSKHLVDLYQASLK 267
             GHWSR CRT KHLVDLYQ SLK
Sbjct: 275 GKGHWSRTCRTPKHLVDLYQESLK 287

[Close]

BLAST of Clc08G16350 vs. ExPASy TrEMBL
Match: A0A438ID00 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1841 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.2e-94
Identity = 180/275 (65.45%), Postives = 217/275 (78.91%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL  TIK+ N  S+Q++AKA+IFLRHHLH+GLK +YLT+KDP  LW NLK+RYDHQKT+
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARY+WMHLRLQDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFHASN+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           LQQQYRE+ F +YSELISCLL AEQNNELLM+NH+SRPTG+ PFPEVNA++   RGR RG
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGRGRGRGRGRDRDRGRNSYYFRGGHSNH-------LNFKRTTRND--DHKGKVPQGKNS 240
           RGRGRGRGR         +  + G +SN+       L+ ++   N+     GK  Q K  
Sbjct: 213 RGRGRGRGR---------NPRYHGSYSNNSQKMKASLHHQKWNNNETIQENGKRLQDKPP 272

Query: 241 KDDEHKCFQCGMTGHWSRVCRTSKHLVDLYQASLK 267
           K+ E+ C++CGM GHWSR CRT KHLVDLYQAS+K
Sbjct: 273 KNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIK 298

[Close]

BLAST of Clc08G16350 vs. ExPASy TrEMBL
Match: A0A286QJ35 (Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 183/270 (67.78%), Postives = 214/270 (79.26%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL  TIK+ N  S+Q++AKA+IFLRHHLH+GLK +YLT+KDP  LW NLK+RYDHQKT+
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARY+WMHLRLQDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFHASN+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           LQQQYRE+ F +YSELISCLL AEQNNELLM+NH+SRPTG+ PFPEVNA++   RGR R 
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRE 212

Query: 181 RGRGRGRGRGRD-RDRG---RNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEH 240
           RGRGRGRGRGR+ R  G    NS   +   S H      T      GK  Q K  K+ E+
Sbjct: 213 RGRGRGRGRGRNPRYHGSYSNNSQKMKA--SLHHQKWNNTETIQENGKRLQDKPPKNHEN 272

Query: 241 KCFQCGMTGHWSRVCRTSKHLVDLYQASLK 267
            C++CGM GHWSR CRT KHLVDLYQAS+K
Sbjct: 273 NCYRCGMKGHWSRTCRTPKHLVDLYQASIK 300

[Close]

BLAST of Clc08G16350 vs. ExPASy TrEMBL
Match: A5AJ43 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.0e-92
Identity = 177/266 (66.54%), Postives = 209/266 (78.57%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL  TIK+ N  S+Q++AKA+IFLRHHLH+GLK +Y T+KDP  LW NLK+RYDHQKT+
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYFTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARY+WMHLRLQDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFHASN+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           LQQQYRE+ F +YSELISCLL AEQNNELLM+NH+SRPTG+ PFPEVNA++   RGR RG
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGRGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEHKCFQ 240
           RGRGRGRGR        ++   +   S H      T      GK  Q K  K+ E+ C++
Sbjct: 213 RGRGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNTETIQENGKRLQDKPPKNHENNCYR 272

Query: 241 CGMTGHWSRVCRTSKHLVDLYQASLK 267
           CGM GHWSR CRT KHLVDLYQAS+K
Sbjct: 273 CGMKGHWSRTCRTPKHLVDLYQASIK 298

[Close]

BLAST of Clc08G16350 vs. ExPASy TrEMBL
Match: A5C0A9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_035070 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.4e-92
Identity = 182/270 (67.41%), Postives = 213/270 (78.89%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL  TIK+ N  S+Q++AKA+IFLRH+LH+GLK +YLT+KDP  LW NLK+RYDHQKT+
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHNLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARY+WMHLRLQDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFHASN+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           LQQQYRE  F +YSELISCLL AEQNNELLM+NH+SRPTG+ PFPEVNA++   RGR RG
Sbjct: 153 LQQQYRECRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGRGRGRGRGRD-RDRG---RNSYYFRGGHSNHLNFKRTTRNDDHKGKVPQGKNSKDDEH 240
           RGRGRGRG GR+ R  G    NS   +   S H      T      GK  Q K  K+ E+
Sbjct: 213 RGRGRGRGHGRNPRYHGSYSNNSQKMKA--SLHHQKWNNTETIQENGKRLQDKPPKNHEN 272

Query: 241 KCFQCGMTGHWSRVCRTSKHLVDLYQASLK 267
            C++CGM GHWSR CRT KHLVDLYQAS+K
Sbjct: 273 NCYRCGMKGHWSRTCRTPKHLVDLYQASIK 300

[Close]

BLAST of Clc08G16350 vs. ExPASy TrEMBL
Match: A0A6J1CSH6 (uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013806 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.8e-92
Identity = 177/216 (81.94%), Postives = 191/216 (88.43%), Query Frame = 0


Query: 1   MNLEETIKEVNATSIQEKAKAIIFLRHHLHKGLKMKYLTIKDPCILWKNLKQRYDHQKTI 60
           MNL ETIKE N T+ QE AKA+IFLRHHLH+GLKM+YLTIKD   LW+NLK+RYDHQKT+
Sbjct: 33  MNLGETIKEENTTTSQENAKAMIFLRHHLHEGLKMEYLTIKDLLALWQNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHASNML 120
           ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKL LCGEKITD+DMLEKT+STFH SN+L
Sbjct: 93  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLKLCGEKITDSDMLEKTYSTFHVSNIL 152

Query: 121 LQQQYREKGFKQYSELISCLLAAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRSRG 180
           LQQQYREKGFK+YSELISCLL A+QNNELLMKNHESRPTG TPFPE NAVNFNN      
Sbjct: 153 LQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEANAVNFNN------ 212

Query: 181 RGRGRGRGRGRDRDRGRNSYYFRGGHSNHLNFKRTT 217
           RGRGRGRGRGRDR RGRN++ FRGG  N  NFKRTT
Sbjct: 213 RGRGRGRGRGRDRGRGRNNFSFRGGRYNRPNFKRTT 242

The following BLAST results are available for this feature:

BLAST of Clc08G16350 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833168.1	9.6e-101	89.81	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_028757260.1	1.7e-97	70.83	uncharacterized protein LOC114716420 [Prosopis alba] >XP_028762828.1 uncharacter...	[more]
XP_028801898.1	1.4e-96	70.08	uncharacterized protein LOC114757071 [Prosopis alba]	[more]
XP_028755102.1	9.3e-96	70.57	uncharacterized protein LOC114714527 [Prosopis alba]	[more]
XP_028787995.1	1.6e-95	70.83	uncharacterized protein LOC114743980 [Prosopis alba]	[more]

BLAST of Clc08G16350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G16350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438ID00	3.2e-94	65.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A286QJ35	1.2e-93	67.78	Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1	[more]
A5AJ43	1.0e-92	66.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1	[more]
A5C0A9	1.4e-92	67.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_035070 PE=4 SV=1	[more]
A0A6J1CSH6	1.8e-92	81.94	uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Clc08G16350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 237..253 e-value: 0.0054 score: 25.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 237..252 score: 9.075821
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..235
None	No IPR available	PANTHER	PTHR33325	ZINC FINGER, CCHC-TYPE-RELATED	coord: 2..266
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 218..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G16350.1	Clc08G16350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding