Clc08G16163 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G16163
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	60S ribosomal protein L16, putative
Location	ClcChr08: 26746510 .. 26748386 (+)
RNA-Seq Expression	Clc08G16163
Synteny	Clc08G16163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGAGAGAATACACAGGGAAGAAGCTTAGATAAGAGATTACGTTCTTGCATCACTTTTTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTGTTTGACCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCCAAGCGAATGATCTTCGGTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCATTTCTTCGGTGCTACCTTTTTCTTTCAAAGGGATGGGTTTCGAATGTATATAGACCGTTTTTTAAGGATACCCGGGAACAACTCCTAGGTCAATCAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAATTTTTATTTGAACGAAGTGAAAAAAATGCGATCTTCGTTGTCTAATAGAACAAAGACTAATATTTTAATTGAGTCGGTCAAGATCAAATCTGTTTATCGAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTAAACTAAGAAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGAAAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGAGGATTCGTATATGTTGTTCAGGTCAATCAGAAGGCGCGGAAATAGCTAGAACTAAATGCAGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAAAAAATCGATTATGCTCTTGCGGAAGTATCTACTCGTTGTATAAAATATAAAATAAATAAATAAATAAGGGGGAACGTGTTATATCCGAAACGTACGAAATATAGTAAATATTGTAAAGGCAGATGTTTGCAAACCGAACGATACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCATCTTTCATATCGAGCCATTGAAGCTGCGCATCGGGCTATAATCGAACAATTCCAAAGAAATGGTACAATATGGGTAAGAGTTCTGGCAAATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTTGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCTGCTACATTAGCACATAAACCATGTTCGTCAACCAAGTTTGTTTAGTGGTCATAATGTAATTAATTGGTTAGTGGGGATAAACCAAGTCAGGATTCAAATGAATTGGGCGAAGTGTTTGTTCCCGAATGAGGGAAGTGGAAAGACACTAAGGGAGAAGGGTTGGATTGTTTGTTCCAGGCGTACGACCCTGATACGTTAAGGTTTCTTTCTTTTGGACCGATTTCTAAAGTGACAGTAGTCTTAATAAATAAGAAAGAGAAGAGCTAAGAAGAAGGCTTTATGGGAAAAAGGAATAAAAGTATGTATGTATCTGGGGGTGGGGGTGAAAGGAATTTTCAGAATTTTGTTAGGTCTCAGTGAGGGGAGACTGGGTCATGCGACGGATGCAAGCTAGGCTTTGAAGCACAAAATCCAAGATTTCATAAAAGAAGGAAAAATCAACGTGGTGGATGAAGAGGAAGCCTTTATTTACCCCAACGAGAAAATGAGAGTTTTTTTTTTTTAAGAGCTTGCTCCCTAGTCACACTTCGGTCTCAACATGCTGGGCCAAGGAAGTGTCCGGTTTCCAACATCCCCTACCATCACTACAATTAATGCTATTAAGACTTTTTGGCTTTGTGAGGAAGAACCTAGAGAGGAAGCTCCATTGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATATTTTGA

mRNA sequence

ATGTGGGGAGAGAATACACAGGGAAGAAGCTTAGATAAGAGATTACAAAGCTCGACCAGCGAGAAAAAGTGTTTGACCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCCAAGCGAATGATCTTCGGTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCATTTCTTCGGTGCTACCTTTTTCTTTCAAAGGGATGGGTTTCGAATACCGTTTTTTAAGGATACCCGGGAACAACTCCTAGGTCAATCAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAATTTTTATTTGAACGAAGTGAAAAAAATGCGATCTTCGTTGTCTAATAGAACAAAGACTAATATTTTAATTGAGTCGGTCAAGATCAAATCTGTTTATCGAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTAAACTAAGAAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGAAAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGAGGATTCGTATATGTTGTTCAGGTCAATCAGAAGGCGCGGAAATAGCTAGAACTAAATGCAGAAAGTATGGAAAAACATCTCGTAATGCAGATGTTTGCAAACCGAACGATACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCATCTTTCATATCGAGCCATTGAAGCTGCGCATCGGGCTATAATCGAACAATTCCAAAGAAATGGTACAATATGGGTAAGAGTTCTGGCAAATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTTGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCTGCTACATTAGCACATAAACCATGTTCGTCAACCAATGGGGATAAACCAAGTCAGGATTCAAATGAATTGGGCGAATCACACTTCGGTCTCAACATGCTGGGCCAAGGAAGTGTCCGGTTTCCAACATCCCCTACCATCACTACAATTAATGCTATTAAGACTTTTTGGCTTTGTGAGGAAGAACCTAGAGAGGAAGCTCCATTGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATATTTTGA

Coding sequence (CDS)

ATGTGGGGAGAGAATACACAGGGAAGAAGCTTAGATAAGAGATTACAAAGCTCGACCAGCGAGAAAAAGTGTTTGACCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCCAAGCGAATGATCTTCGGTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCATTTCTTCGGTGCTACCTTTTTCTTTCAAAGGGATGGGTTTCGAATACCGTTTTTTAAGGATACCCGGGAACAACTCCTAGGTCAATCAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAATTTTTATTTGAACGAAGTGAAAAAAATGCGATCTTCGTTGTCTAATAGAACAAAGACTAATATTTTAATTGAGTCGGTCAAGATCAAATCTGTTTATCGAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTAAACTAAGAAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGAAAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGAGGATTCGTATATGTTGTTCAGGTCAATCAGAAGGCGCGGAAATAGCTAGAACTAAATGCAGAAAGTATGGAAAAACATCTCGTAATGCAGATGTTTGCAAACCGAACGATACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCATCTTTCATATCGAGCCATTGAAGCTGCGCATCGGGCTATAATCGAACAATTCCAAAGAAATGGTACAATATGGGTAAGAGTTCTGGCAAATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTTGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCTGCTACATTAGCACATAAACCATGTTCGTCAACCAATGGGGATAAACCAAGTCAGGATTCAAATGAATTGGGCGAATCACACTTCGGTCTCAACATGCTGGGCCAAGGAAGTGTCCGGTTTCCAACATCCCCTACCATCACTACAATTAATGCTATTAAGACTTTTTGGCTTTGTGAGGAAGAACCTAGAGAGGAAGCTCCATTGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATATTTTGA

Protein sequence

MWGENTQGRSLDKRLQSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISLFHFFGATFFFQRDGFRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKCRKYGKTSRNADVCKPNDTQLGFGRYGTKSCRAGHLSYRAIEAAHRAIIEQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIACVSTGQIPFEMDGVSLSNARQAATLAHKPCSSTNGDKPSQDSNELGESHFGLNMLGQGSVRFPTSPTITTINAIKTFWLCEEEPREEAPLKEEEEIRLEFLEIF

Homology

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BLAST of Clc08G16163 vs. NCBI nr
Match: KAB8477473.1 (hypothetical protein FH972_025339 [Carpinus fangiana])

HSP 1 Score: 566.2 bits (1458), Expect = 2.3e-157
Identity = 311/393 (79.13%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEKKCL EAKKRLTHFIRQANDLRFAGTTKTTI
Sbjct: 244 MGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTI 303

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   +   FF+D REQLLGQ RIKCWNLMGKD+VIELIEKFIDLG
Sbjct: 304 SLFPFFGATFFFPRDGVGMYNNLFFEDAREQLLGQLRIKCWNLMGKDRVIELIEKFIDLG 363

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGELIKGIEMMIEIILRNR IPYGYN YLNEVKKMRS LSNRTKTN LIESVKIKSVY+
Sbjct: 364 GIGELIKGIEMMIEIILRNRIIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVKIKSVYQ 423

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LRNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+SEGAEIART+C
Sbjct: 424 SASPIAQDISFELRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC 483

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CKP+ TQLGFGRYG KSCRAG LSY
Sbjct: 484 GKYGKTSRNIFNQKIDYAPAEVSTRYGILGRCSRGCKPDGTQLGFGRYGIKSCRAGRLSY 543

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 544 RAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAR 603

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BLAST of Clc08G16163 vs. NCBI nr
Match: XP_030965048.1 (uncharacterized protein LOC115986320 [Quercus lobata])

HSP 1 Score: 562.4 bits (1448), Expect = 3.3e-156
Identity = 308/391 (78.77%), Postives = 323/391 (82.61%), Query Frame = 0


Query: 3   GENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISL 62
           G N QGRSLDKR+        +SSTSEKKCL EAKKRLTHFIRQANDLRFAGTTKTTISL
Sbjct: 274 GANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISL 333

Query: 63  FHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGI 122
           F FFGATF F RDG   ++  FF+D REQLLGQ RIKCWNLMGKD+V+ELIEKFIDLGGI
Sbjct: 334 FPFFGATFLFPRDGVGMYKNLFFEDAREQLLGQLRIKCWNLMGKDRVMELIEKFIDLGGI 393

Query: 123 GELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSA 182
           GE IKGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRTKTN LIESVKIKSVY+SA
Sbjct: 394 GEFIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVKIKSVYQSA 453

Query: 183 SPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKCRK 242
           S IAQDISF+LRNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+SEGAEIART+C K
Sbjct: 454 SLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECGK 513

Query: 243 YGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSYRA 302
           YGKTSRN          A+V             CKP+ TQLGFGRYGTKSCRAG LSYRA
Sbjct: 514 YGKTSRNVFNQKIDYAPAEVSTRYGILGRCRRGCKPDGTQLGFGRYGTKSCRAGRLSYRA 573

Query: 303 IEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIACVS 351
           IEAA RAII         QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA VS
Sbjct: 574 IEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVS 633

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BLAST of Clc08G16163 vs. NCBI nr
Match: KAF3452254.1 (hypothetical protein FNV43_RR08352 [Rhamnella rubrinervis])

HSP 1 Score: 560.1 bits (1442), Expect = 1.7e-155
Identity = 304/403 (75.43%), Postives = 328/403 (81.39%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N +GRSLDKR+        +SSTSEKKCL EAKKRLTHFIR+AN LRFAGTTKTTI
Sbjct: 235 MGGANARGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIREANSLRFAGTTKTTI 294

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   ++  FF+D REQLLGQ RIKCWNLMGKDKV+ELIEKFIDLG
Sbjct: 295 SLFPFFGATFFFPRDGVGMYKNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIEKFIDLG 354

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGEL+KGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRT TN LIESVKIKSVY+
Sbjct: 355 GIGELVKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQ 414

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LRNKTRSFRSIFSKI KDIPL+MKKGVE IRICCSG+ EGAEIART+C
Sbjct: 415 SASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLIMKKGVEGIRICCSGRLEGAEIARTEC 474

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CKP+ TQLGFGRYGT+SCRAG LSY
Sbjct: 475 GKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSKGCKPDGTQLGFGRYGTQSCRAGRLSY 534

Query: 301 RAIEAA--------HRAIIEQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 360
           RAIEAA        HRA+  QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 535 RAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAR 594

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BLAST of Clc08G16163 vs. NCBI nr
Match: EEF27073.1 (60S ribosomal protein L16, putative [Ricinus communis])

HSP 1 Score: 558.1 bits (1437), Expect = 6.3e-155
Identity = 305/393 (77.61%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEK CL+EAKKRLTHFIRQANDLRFAGTTKTTI
Sbjct: 270 MGGANAQGRSLDKRIRSRIAFFVESSTSEKNCLSEAKKRLTHFIRQANDLRFAGTTKTTI 329

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   +   FF+D REQLLGQ RIKCWNLMGKDKV+ELIEKFI+LG
Sbjct: 330 SLFPFFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIEKFINLG 389

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGELIKGIEMMIEIILRNRRIPYGYN YLNE+KKMRS LSNRT TN LIES+K+KSVY+
Sbjct: 390 GIGELIKGIEMMIEIILRNRRIPYGYNSYLNEMKKMRSLLSNRTNTNTLIESIKMKSVYQ 449

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LRNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+ EGAEIART+C
Sbjct: 450 SASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTEC 509

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CK + TQLGFGRYGTKSC+AG LSY
Sbjct: 510 GKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKLDGTQLGFGRYGTKSCKAGRLSY 569

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 570 RAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAR 629

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BLAST of Clc08G16163 vs. NCBI nr
Match: YP_009526555.1 (ribosomal protein S3 [Ammopiptanthus mongolicus] >AXV54314.1 ribosomal protein S3 [Ammopiptanthus mongolicus])

HSP 1 Score: 542.7 bits (1397), Expect = 2.7e-150
Identity = 298/393 (75.83%), Postives = 318/393 (80.92%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEKKCL EAKKRLTHFIR ANDLRFAGTTKTTI
Sbjct: 252 MGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRFAGTTKTTI 311

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RD    +   FF+D RE LLGQ RIKCWNLMGKDKV+ELI+KFIDLG
Sbjct: 312 SLFPFFGATFFFPRDRVGMYNHLFFEDAREPLLGQLRIKCWNLMGKDKVMELIDKFIDLG 371

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
            IGE IKGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRT TN LIESVKIKSVY+
Sbjct: 372 RIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQ 431

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LR KTRSFRSIFS+I KDIPLVMKKGVE IRICCSG+SEGAEIART+C
Sbjct: 432 SASPIAQDISFQLRKKTRSFRSIFSRIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC 491

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CKP+ T+LGFGRYGT+SCRAG LSY
Sbjct: 492 GKYGKTSRNVFNQKIDYASAEVSTRYGISGRCSRGCKPDGTKLGFGRYGTQSCRAGRLSY 551

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF++NG IWVRV A++PITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 552 RAIEAARRAIIGHFHRAMSGQFRKNGKIWVRVFADIPITGKPTEVRMGRGKGNPTGWIAR 611

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BLAST of Clc08G16163 vs. ExPASy Swiss-Prot
Match: Q04716 (Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.6e-103
Identity = 202/249 (81.12%), Postives = 215/249 (86.35%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        ++STSEKKCL EAKKR+THFIRQANDLRFAGTTKTTI
Sbjct: 271 MGGANAQGRSLDKRIASCIAFFVENSTSEKKCLAEAKKRVTHFIRQANDLRFAGTTKTTI 330

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   +   FF+D REQLLGQ R KCWNLMGKDKV+ELIEKFIDL 
Sbjct: 331 SLFPFFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRRKCWNLMGKDKVMELIEKFIDLN 390

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
            IGELI+GIEMMIEIILRNRRIPYGYN+YLNEVKKMRS L NRT TN LIESVKIKSVY+
Sbjct: 391 RIGELIRGIEMMIEIILRNRRIPYGYNYYLNEVKKMRSLLYNRTNTNTLIESVKIKSVYQ 450

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 239
           SASPIAQDISF+ RNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+ EGAEIART+C
Sbjct: 451 SASPIAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTEC 510

[Close]

BLAST of Clc08G16163 vs. ExPASy Swiss-Prot
Match: P27754 (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3 SV=2)

HSP 1 Score: 362.1 bits (928), Expect = 8.7e-99
Identity = 201/272 (73.90%), Postives = 218/272 (80.15%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRS + R+        +SSTSEKK L E KK L HFIRQ NDLRFAG TKTTI
Sbjct: 272 MGGANRQGRSNELRIRSRIAFFVESSTSEKKSLAEDKKGLPHFIRQENDLRFAGRTKTTI 331

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   ++  FF+D REQLLGQ RIKCW LMGKDKV+ELIEKFIDLG
Sbjct: 332 SLFPFFGATFFFPRDGVGVYKHLFFEDAREQLLGQLRIKCWKLMGKDKVMELIEKFIDLG 391

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGELIKGIE+MIEIILRNRRIPYGYN YLNEVKKMRS LSNRTKTN +IESVKIKSVY+
Sbjct: 392 GIGELIKGIEIMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTIIESVKIKSVYQ 451

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+ RNK RSFRSIFS+I KDIPLVMKKGVE IRICCSG+S+GAEIART+C
Sbjct: 452 SASPIAQDISFQPRNKRRSFRSIFSQIVKDIPLVMKKGVEGIRICCSGRSKGAEIARTEC 511

Query: 241 RKYGKTSRNADVCK----PNDTQLGFGRYGTK 258
            KYGKTSRN    K    P +    +G  G K
Sbjct: 512 GKYGKTSRNVFNQKIDYAPAEVSTRYGILGVK 543

[Close]

BLAST of Clc08G16163 vs. ExPASy Swiss-Prot
Match: P27928 (Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 4.2e-93
Identity = 188/243 (77.37%), Postives = 203/243 (83.54%), Query Frame = 0


Query: 7   QGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISLFHFF 66
           +G SLDKR+        +SSTS+KKCL  AKKRL HFIRQANDLRFAGTTKTTISLF FF
Sbjct: 274 KGGSLDKRIRSRIAFFVESSTSDKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFPFF 333

Query: 67  GATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGIGELI 126
           GATFFF RDG   +  PF++  REQLLGQ RIKC NLMGKDKV+ELIEKFIDLG IG+LI
Sbjct: 334 GATFFFSRDGVGVYNNPFYEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIDLGRIGKLI 393

Query: 127 KGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSASPIA 186
           KGIEMMIEIILR RRIPYGYN YLNEV+KMRS LSNRT TN LIESVKIKSVY+SAS IA
Sbjct: 394 KGIEMMIEIILRKRRIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIA 453

Query: 187 QDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKCRKYGKT 239
           QDISF+LRN   SFRSIFSKI KDIPL+M KGVE IRICCSG+  GAEIART+C KYGKT
Sbjct: 454 QDISFQLRNNPISFRSIFSKIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKT 513

[Close]

BLAST of Clc08G16163 vs. ExPASy Swiss-Prot
Match: P46773 (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-90
Identity = 186/243 (76.54%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 7   QGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISLFHFF 66
           +G SLDKR+        +SSTSEKKCL  AKKRL HFIRQANDLRFAGTTKTTISLF FF
Sbjct: 253 KGGSLDKRIRSRIAFFVESSTSEKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFPFF 312

Query: 67  GATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGIGELI 126
           GATFFF RDG   +  PFF+  REQLLGQ RIKC NLMGKDKV+ELIEKFI LG IG+LI
Sbjct: 313 GATFFFPRDGVGVYNNPFFEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIYLGRIGKLI 372

Query: 127 KGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSASPIA 186
           KGIEMMIEIILR R IPYGYN YLNEV+KMRS LSNRT TN LIESVKIKSVY+SAS IA
Sbjct: 373 KGIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIA 432

Query: 187 QDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKCRKYGKT 239
           QDISF+L N   SFRSIFS+I KDIPL+M KGVE IRICCSG+  GAEIART+C KYGKT
Sbjct: 433 QDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKT 492

[Close]

BLAST of Clc08G16163 vs. ExPASy Swiss-Prot
Match: Q95749 (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1 SV=3)

HSP 1 Score: 296.6 bits (758), Expect = 4.5e-79
Identity = 180/287 (62.72%), Postives = 206/287 (71.78%), Query Frame = 0


Query: 5   NTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISLFH 64
           N QGRSL KR+        +S TSEKKCL EAK RLTHFIR ANDLRFAGTTKTTISLF 
Sbjct: 275 NAQGRSLQKRIRSRIAFFVESLTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFP 334

Query: 65  FFGATFFFQRDGFRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGIGELIK 124
           FFGATFFF RDG  +    D REQLL Q R+KCWNL+GKDK++ELIEK  +LGGI ELIK
Sbjct: 335 FFGATFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIK 394

Query: 125 GIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSASPIAQ 184
            I+MMIEIILR R IPY YN Y  EVKKMRS LSNRT T  LIESVKIKSVY+SAS IAQ
Sbjct: 395 VIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQ 454

Query: 185 DISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQ-SEGAEIARTKCRKYGKT 244
           DISF+L+NK RSF SIF+KI K+IP    KGVE IRIC SG+  + AE A+TKC K+ KT
Sbjct: 455 DISFQLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKT 514

Query: 245 SRNADVCKPNDTQLG-FGRYGTKSCRAGHLSYRAIEAAHRAIIEQFQ 282
           S N    K +   +  F RYG    +   +SY + +   RAI E ++
Sbjct: 515 SCNVFNHKIDYAPVEVFTRYGILGVKV-WISY-SQKKGRRAISETYE 555

[Close]

BLAST of Clc08G16163 vs. ExPASy TrEMBL
Match: A0A5N6L0R0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025339 PE=3 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 1.1e-157
Identity = 311/393 (79.13%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEKKCL EAKKRLTHFIRQANDLRFAGTTKTTI
Sbjct: 244 MGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTI 303

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   +   FF+D REQLLGQ RIKCWNLMGKD+VIELIEKFIDLG
Sbjct: 304 SLFPFFGATFFFPRDGVGMYNNLFFEDAREQLLGQLRIKCWNLMGKDRVIELIEKFIDLG 363

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGELIKGIEMMIEIILRNR IPYGYN YLNEVKKMRS LSNRTKTN LIESVKIKSVY+
Sbjct: 364 GIGELIKGIEMMIEIILRNRIIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVKIKSVYQ 423

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LRNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+SEGAEIART+C
Sbjct: 424 SASPIAQDISFELRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC 483

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CKP+ TQLGFGRYG KSCRAG LSY
Sbjct: 484 GKYGKTSRNIFNQKIDYAPAEVSTRYGILGRCSRGCKPDGTQLGFGRYGIKSCRAGRLSY 543

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 544 RAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAR 603

[Close]

BLAST of Clc08G16163 vs. ExPASy TrEMBL
Match: B9TAP3 (60S ribosomal protein L16, putative OS=Ricinus communis OX=3988 GN=RCOM_2145580 PE=3 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 3.0e-155
Identity = 305/393 (77.61%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEK CL+EAKKRLTHFIRQANDLRFAGTTKTTI
Sbjct: 270 MGGANAQGRSLDKRIRSRIAFFVESSTSEKNCLSEAKKRLTHFIRQANDLRFAGTTKTTI 329

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RDG   +   FF+D REQLLGQ RIKCWNLMGKDKV+ELIEKFI+LG
Sbjct: 330 SLFPFFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIEKFINLG 389

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
           GIGELIKGIEMMIEIILRNRRIPYGYN YLNE+KKMRS LSNRT TN LIES+K+KSVY+
Sbjct: 390 GIGELIKGIEMMIEIILRNRRIPYGYNSYLNEMKKMRSLLSNRTNTNTLIESIKMKSVYQ 449

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LRNKTRSFRSIFSKI KDIPLVMKKGVE IRICCSG+ EGAEIART+C
Sbjct: 450 SASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTEC 509

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CK + TQLGFGRYGTKSC+AG LSY
Sbjct: 510 GKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKLDGTQLGFGRYGTKSCKAGRLSY 569

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 570 RAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAR 629

[Close]

BLAST of Clc08G16163 vs. ExPASy TrEMBL
Match: A0A385G296 (Ribosomal protein S3 OS=Ammopiptanthus mongolicus OX=126911 GN=rps3 PE=3 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 1.3e-150
Identity = 298/393 (75.83%), Postives = 318/393 (80.92%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTI 60
           M G N QGRSLDKR+        +SSTSEKKCL EAKKRLTHFIR ANDLRFAGTTKTTI
Sbjct: 252 MGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRFAGTTKTTI 311

Query: 61  SLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLG 120
           SLF FFGATFFF RD    +   FF+D RE LLGQ RIKCWNLMGKDKV+ELI+KFIDLG
Sbjct: 312 SLFPFFGATFFFPRDRVGMYNHLFFEDAREPLLGQLRIKCWNLMGKDKVMELIDKFIDLG 371

Query: 121 GIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYR 180
            IGE IKGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRT TN LIESVKIKSVY+
Sbjct: 372 RIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQ 431

Query: 181 SASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAEIARTKC 240
           SASPIAQDISF+LR KTRSFRSIFS+I KDIPLVMKKGVE IRICCSG+SEGAEIART+C
Sbjct: 432 SASPIAQDISFQLRKKTRSFRSIFSRIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC 491

Query: 241 RKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCRAGHLSY 300
            KYGKTSRN          A+V             CKP+ T+LGFGRYGT+SCRAG LSY
Sbjct: 492 GKYGKTSRNVFNQKIDYASAEVSTRYGISGRCSRGCKPDGTKLGFGRYGTQSCRAGRLSY 551

Query: 301 RAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIAC 351
           RAIEAA RAII         QF++NG IWVRV A++PITGKPTEVRMGRGKGNPTGWIA 
Sbjct: 552 RAIEAARRAIIGHFHRAMSGQFRKNGKIWVRVFADIPITGKPTEVRMGRGKGNPTGWIAR 611

[Close]

BLAST of Clc08G16163 vs. ExPASy TrEMBL
Match: A0A5C7GR71 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027810 PE=3 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 3.9e-150
Identity = 301/399 (75.44%), Postives = 321/399 (80.45%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRLQS----------STSEKKCLTEA----KKRLTHFIRQANDLRFAG 60
           M G N QGRSLDKR++S          S SEKKCL E+    KKRLTHFIRQANDLRFAG
Sbjct: 274 MGGANAQGRSLDKRIRSRIAFFVESLTSESEKKCLAESKNKKKKRLTHFIRQANDLRFAG 333

Query: 61  TTKTTISLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIE 120
           TTKTTISLF FFGATFFF RDG   +   FF++ REQLLG+ RIKCWNLMGKDKV+ELIE
Sbjct: 334 TTKTTISLFPFFGATFFFLRDGVGVYNNLFFENAREQLLGKLRIKCWNLMGKDKVMELIE 393

Query: 121 KFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVK 180
           KFI+LGGIGELIKGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRT TN LIESVK
Sbjct: 394 KFINLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVK 453

Query: 181 IKSVYRSASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAE 240
           IKSVY+SASPIAQDISF+LRNK RSFRSIFSKI K+IPLVM KGVE IRICCSG+ EGAE
Sbjct: 454 IKSVYQSASPIAQDISFQLRNKKRSFRSIFSKIVKNIPLVMNKGVEGIRICCSGRLEGAE 513

Query: 241 IARTKCRKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCR 300
           IART+C KYGKTSRN          A+V             CKP+ TQLGFGRYGTKS +
Sbjct: 514 IARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKPDGTQLGFGRYGTKSYK 573

Query: 301 AGHLSYRAIEAA--------HRAIIEQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNP 351
           AG LSYRAIEAA        HRA+  QF+RNG IWVRVLA+LPITGKPTEVRMGRGKGNP
Sbjct: 574 AGRLSYRAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNP 633

[Close]

BLAST of Clc08G16163 vs. ExPASy TrEMBL
Match: A0A6A5LBS7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001792 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 6.8e-147
Identity = 296/399 (74.19%), Postives = 316/399 (79.20%), Query Frame = 0


Query: 1   MWGENTQGRSLDKRL--------QSSTSEKKCLTEAK------KRLTHFIRQANDLRFAG 60
           M G N QGRSLDKR+        +SSTSEKK L EAK      KRLTHFIR ANDLRFAG
Sbjct: 324 MGGANAQGRSLDKRIRSRIAFFVESSTSEKKSLAEAKNRNRNRKRLTHFIRLANDLRFAG 383

Query: 61  TTKTTISLFHFFGATFFFQRDG---FRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIE 120
           TTKTTISLF FFGATFFF RD    +   FF+D RE LLGQ RIKCWNLMGKDKV+E I+
Sbjct: 384 TTKTTISLFPFFGATFFFPRDRVGMYNHLFFEDAREPLLGQLRIKCWNLMGKDKVMEFID 443

Query: 121 KFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVK 180
           KFIDLG IGE IKGIEMMIEIILRNRRIPYGYN YLNEVKKMRS LSNRTKTN LIESVK
Sbjct: 444 KFIDLGRIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVK 503

Query: 181 IKSVYRSASPIAQDISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQSEGAE 240
           IKSVY+SASPIAQDISF+LR KTRSFRSI S+I KDIPLVMKKGVE IRICCSG+SEGAE
Sbjct: 504 IKSVYQSASPIAQDISFQLRKKTRSFRSILSRIVKDIPLVMKKGVEGIRICCSGRSEGAE 563

Query: 241 IARTKCRKYGKTSRN----------ADV-------------CKPNDTQLGFGRYGTKSCR 300
           IART+C KYGKTSRN          A+V             CKP+ T+LGFGRYGT+SCR
Sbjct: 564 IARTECGKYGKTSRNVFNQKIDYASAEVSTRYGISGRCSRGCKPDGTKLGFGRYGTQSCR 623

Query: 301 AGHLSYRAIEAAHRAII--------EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNP 351
           AG LSYRAIEAA RAII         QF++NG IWVRV A++PITGKPTEVRMGRGKGNP
Sbjct: 624 AGRLSYRAIEAARRAIIGHFHRAMSGQFRKNGKIWVRVFADIPITGKPTEVRMGRGKGNP 683

[Close]

BLAST of Clc08G16163 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 304.3 bits (778), Expect = 1.5e-82
Identity = 172/243 (70.78%), Postives = 190/243 (78.19%), Query Frame = 0


Query: 5   NTQGRSLDKRL--------QSSTSEKKCLTEAKKRLTHFIRQANDLRFAGTTKTTISLFH 64
           N QGRSL KR+        +SSTSEKKCL EAK RLTHFIR ANDLRFAGTTKTTISLF 
Sbjct: 275 NAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFP 334

Query: 65  FFGATFFFQRDGFRIPFFKDTREQLLGQSRIKCWNLMGKDKVIELIEKFIDLGGIGELIK 124
           FFGATFFF RDG  +    D REQLL Q R+KCWNL+GKDK++ELIEK  +LGGI ELIK
Sbjct: 335 FFGATFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIK 394

Query: 125 GIEMMIEIILRNRRIPYGYNFYLNEVKKMRSSLSNRTKTNILIESVKIKSVYRSASPIAQ 184
            I+MMIEIILR R IPY YN Y  EVKKMRS LSNRT T  LIESVKIKSVY+SASPIAQ
Sbjct: 395 VIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQ 454

Query: 185 DISFKLRNKTRSFRSIFSKIEKDIPLVMKKGVERIRICCSGQ-SEGAEIARTKCRKYGKT 239
           DISF+L+NK RSF SIF+KI K+IP    KGVE IRIC SG+  + AE A+TKC K+ KT
Sbjct: 455 DISFQLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKT 513

[Close]

BLAST of Clc08G16163 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-49
Identity = 103/134 (76.87%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 226 RTKCRKYGKTSRNADVCKPNDTQLGFGRYGTKSCRAGHLSYRAIEAAHRAII-------- 285
           RTK  KY K  R +  CKP+ T+LGFGRYGTKSC+AG LSYRAIEAA RAII        
Sbjct: 41  RTKYSKYRK-GRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMS 100

Query: 286 EQFQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIACVSTGQIPFEMDGVSLSNAR 345
            QF+RNG IWVRV A+LPITGKPTEVRMGRGKGNPTGWIA VSTGQIPFEMDGVSL+NAR
Sbjct: 101 GQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANAR 160

Query: 346 QAATL-AHKPCSST 351
           QAATL AHKPCSST
Sbjct: 161 QAATLAAHKPCSST 173

[Close]

BLAST of Clc08G16163 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-17
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 226 RTKCRKY------GKTSRNADVCKPNDTQLGFGRYGTKSCRAGHLSYRAIEAAHRAIIEQ 285
           RT+ RK       G +SR   +C        FGRY  ++     ++ R IEA  RA+   
Sbjct: 6   RTRFRKQHRGRLKGISSRGNRIC--------FGRYALQTLEPAWITSRQIEAGRRAMTRN 65

Query: 286 FQRNGTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIACVSTGQIPFEMDGVSLSNARQA 344
            +R G IWVR+  + P+T +P E RMG GKG+P  W+A V  G+I +EM GV  + AR+A
Sbjct: 66  VRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKA 121

[Close]

BLAST of Clc08G16163 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-14
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 226 RTKCRKYGKTSRNADVCKPNDTQLGF--GRYGTKSCRAGHLSYRAIEAAHRAIIEQFQRN 285
           RTK +K+ +   N  V     +  G+   RY  ++     ++ R IEA  RA+     R 
Sbjct: 834 RTKFQKHHRGRINKGV-----SSQGYICSRYALQTLEPAWITSRQIEAGRRAMTRNIGRG 893

Query: 286 GTIWVRVLANLPITGKPTEVRMGRGKGNPTGWIACVSTGQIPFEMDGVSLSNARQAATLA 344
            T+ V + A+ P+T +P E RMGRGKG P  W+A V  G+I +EM GVS   AR+A ++A
Sbjct: 894 LTVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIA 948

The following BLAST results are available for this feature:

BLAST of Clc08G16163 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8477473.1	2.3e-157	79.13	hypothetical protein FH972_025339 [Carpinus fangiana]	[more]
XP_030965048.1	3.3e-156	78.77	uncharacterized protein LOC115986320 [Quercus lobata]	[more]
KAF3452254.1	1.7e-155	75.43	hypothetical protein FNV43_RR08352 [Rhamnella rubrinervis]	[more]
EEF27073.1	6.3e-155	77.61	60S ribosomal protein L16, putative [Ricinus communis]	[more]
YP_009526555.1	2.7e-150	75.83	ribosomal protein S3 [Ammopiptanthus mongolicus] >AXV54314.1 ribosomal protein S...	[more]

BLAST of Clc08G16163 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04716	2.6e-103	81.12	Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=...	[more]
P27754	8.7e-99	73.90	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3...	[more]
P27928	4.2e-93	77.37	Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1	[more]
P46773	1.9e-90	76.54	Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q95749	4.5e-79	62.72	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1...	[more]

BLAST of Clc08G16163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6L0R0	1.1e-157	79.13	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025339 PE=3 SV=1	[more]
B9TAP3	3.0e-155	77.61	60S ribosomal protein L16, putative OS=Ricinus communis OX=3988 GN=RCOM_2145580 ...	[more]
A0A385G296	1.3e-150	75.83	Ribosomal protein S3 OS=Ammopiptanthus mongolicus OX=126911 GN=rps3 PE=3 SV=1	[more]
A0A5C7GR71	3.9e-150	75.44	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027810 PE=3 SV=1	[more]
A0A6A5LBS7	6.8e-147	74.19	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001792 PE=3 SV=1	[more]

BLAST of Clc08G16163 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00090.1	1.5e-82	70.78	structural constituent of ribosome;protein binding	[more]
ATMG00080.1	2.2e-49	76.87	ribosomal protein L16	[more]
ATCG00790.1	2.2e-17	38.71	ribosomal protein L16	[more]
AT2G28830.1	3.0e-14	37.50	PLANT U-BOX 12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 280..309 score: 53.13 coord: 310..339 score: 49.73 coord: 246..258 score: 40.62 coord: 264..275 score: 53.67
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 226..344 e-value: 3.7E-29 score: 99.4
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 225..344 e-value: 1.5E-28 score: 99.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 245..343 e-value: 7.08661E-28 score: 104.496
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 167..242 e-value: 2.4E-12 score: 49.0
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 166..239
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 246..350 e-value: 9.1E-34 score: 117.8
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 226..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..365
IPR044954	Ribosomal protein S3, mitochondrial, plant	PANTHER	PTHR35928	RIBOSOMAL PROTEIN S3, MITOCHONDRIAL	coord: 2..239
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 304..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G16163.1	Clc08G16163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome