Clc08G15180 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G15180
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription initiation factor IIF subunit beta
LocationClcChr08: 26036943 .. 26041928 (+)
RNA-Seq ExpressionClc08G15180
SyntenyClc08G15180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAGAGAGAGAGAGAGAGAGAGAGATTTTGTAAGTTAATAGACATGGAAGATGAGCAGGGCGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTCTCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAATCCTCTTCTCTACAGGTAAACTCTAATTCAAGAACTGTAATTGATGTTGAAGTGGTCAACTTATTAAACTCGTTTTCTTAGTAGGATTATTTGTTTTCTTGGGCTTCAAATCTTGTGAATTATGTTGTTTCGGATTGTGAGTTTGATCGATGCTTGAATGTGGAAGCAAAACCCTAGATTTTCATTCGGTGTAATTTTGATCCCTTGGGAGGGAGGATACGTGTTGTCAATTTCTTTGATAAATTCGTCCTAGATAAGGGGAATGTGATTAGTTTAGTTATCGTGAGTACTGAGCTTTGGCCTCAAATTTTGCATCGAAGTCTTGTTTTGGGCTATTTGTTATGAAGCTGAAATAGTTATCAAAGGTTGCAAAAGACATGTCCTACTTGGATAATGTCTCCATTGGTGTGTGCTGTGGAGCCTTGTTTTTGGATTTGGTTAAGGTCCTTACTCCCCTCAAATTACAATTGGAACTGTGGAAAACTTAAGTATCCTAAAAGAGTTAAAATCTTCACTTGGGAGCTCACTCATGACTCACGGCGATATCAACAGTCAAGATAAAATTAAAGTCAGGAACACTCTATTTATTAATTAATATAAGAATCTAAGTCTTCTAATGATGATACCGAAAATACAGGAAATTAGAAAAAGGCTCTTCAGGTGGTCTTAGTGACAAATGAAATTATGCCTGAGCTGGTTAACAAGCACATGTTTCAGTTGGGAAGTTAATTGGACTGAAGTGATTTCTTTAGCAGCTTAAGTAGAAAGATAGCAATGCTATCATATATTGTTGTATTGTTCGGCTGTATTCAGTATTTTGTCAATTGTATTACTGAAAACTTGGTTTCATCATAAAAGACAATCATTATGTGTTCTGATATTACTACGGTAATGTTCTATATTTTCTACCATTTTTCTCTTTTGCTTTGGTTAATCTTGTCTTGCTGTTCTTTTTGCTGTCTATTTCTTAACTCTTACGAGTCTTTGTTTGCCCATACACACTCATATGTACACACACACACATAGGAAGCAAATTATTTATTTATCTTTTTTTTGTTCAACATTGTTTCCCCTTACATGCTTCAAATTGAACCTCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCCTAAATATGTTTAAAGACTTTGTTCCAATGTGTGTCTTTTCAGAGGCAAGTCAAGGTGAGCATCGTGATCCTTATCTGTAGTCCATTATTTCTTTGACTATGCTGTCACCCTGAACGTAAAATGTGAATATTGTTTGATACCCGGAAATGATTCTTTAATTTTATTTTAATTACATTTGTGTATTTTTTTTAAGCTAAGGGACAGGGAAGTTCATTAAAATAAAAAGGGATAGAACTTAGATGAGATTTCCGTTTTGCCCATTGCCAAAGAGGTTATAATCTCCATTTTAAACTAATCAAGAAGCGGTTGTGGTTACAAAAATCCCTAGAAGAGGTGCTCCAAATGGGGAGGCCATATGGGGTAACATTCAATCTTGAAAGTATCACCTATATTCCCATCGTTCCTCTTTAGCTAAATGGACTACAAAAGTCCTCTAGCTGTGCTTTTTAATAAGATTTTCGTGTTTGACTCTTAGTCACCAATTTGAGAGCAGTTCTGGGAGCCAATAAGAATATTGTTAGGGAAACAGGAGTTGGACCCAAAAGTTTCTAGAATTGAGCTTTTTCAACAGGATATTCAACTTAGAGCAATTGGATTTGAGTCTTAAGTTGTTATGTTTGCTTGATTTGCCAATTACCATAAAAGAGCTGCTTCATTCAGTTTAGTGCCTGATAGAATTTAATTTGTTGGAAGAATGGTTCCGAGTTGGGTATGGGAGAGTGAATGGTTTCCACTTATCCAAATGGGGCTGCCTTGACTGAAATTTTATTCTTCCAAGTGATATCTCTCTCCAGACTTTTTGCAAACGTTGCCTGGATTCTAAATAGAGAGAAATAATAGTTTGGATTGATGGAGATAACCACTTAAGCGAAAATTTTAATCTACAGTCCTTGGGTTATTATTCAAATTTGCAATTTTATTGGTCACTTTGTCCAAGAAGGCTCCTGGGAGATGCAAGGGCTTTTTTTTTTTTTTTTTTTTTCAGCTATGGGGAAGCGATGAGAGATAAGGGCAATAAATAATCCTCATGATCATAGATGCCAACCTGTATTCTGACTTTGTTTTTCTATAAGTTGTCGTTGATACCAACTGAGAAGGATTTGGATAAAATAAGTAACAAACAGAAGCTTGCTGAAATAAGTTAAGGAGCAACCTCCATTTTCTCTGAACTACCTCTCTGTTAAGGCTGAAAGTAATATTGTCATCAGCATAATGAATTTAAGAAACATGGATCCGTTGATCATATTCCCTGAAACCTTCAACAAGTACTCACAACATTGGCATGGGCATGGTTTCGGAGTCAACAACTATAGTAGACTCTAGACACGGAGCAGGAGGGGATCCCTGTGACAAATTCCTCTTGAATTGTGGATTTTCCTTTCTAGGTCCTTTGTGGACAATAATAGTATAGTTAACTGAAGAAACGTATTTCTTGATCTAACTTCTCCATTTGTTACCAAATGCCTTTTGGTTTCGTGCAGTTCCCTTCACTTTTTGTTTTAAATGCCTTGATCAATTTTTACACAAAACCTATCTTTTCCATGCACCTCTTGTTTAGAAACAAGGGTTTCATCAGAGATTGTCTTTTCAATAAAGGCTATTTTGGAATGCGTGAATCAATCCATGTTATTTTTAGCTTTTTGCTGCAAGTTTTATGTTTCTTTCGGCACAGTGTAAATTCTTTGTTCATTTGTTTCAATTTTGCAAAGCTTTTTGTAATCTTCCTGGACTGGAAATGTCGACATTCTTCCTTTTGTAATCTGTACTCTATAACAACTTCCCTCAACCTCAGTTGGACCCCTTGTTGTGGGCTTGATTGTTTGTATACCTTATTAATGTTTCATTTTTTTTTTCCTCGTAATGAAAGTAATTGTTTCTAAAAAAACACTTCCCTCCTACTGTTCTAATAACCAATCCCTCCCCACTAGTGGGGTAGTAACAAGAAGATTTATTTGTGCAATTTTAAGGTTTTTATTTTTTGTTATTATTATTATTATTATTATTTTTGTCTTTCAACTTTTATTTTTTACTTTTTCCTTCTTTTAACTTCAACAATGCTAGGGTAGACATTTGAATGTTTGTCGAGGATACAGCCTCAACCAATTGAGTTATGCTTGGATTGGTCTTGCAATTTTAGTTGCTTGCTTAATCTTCATTTAAAACTATGAACTGATTTAACAAGCATCATTAGCTCTTGTTTTCATTTTCTTTATGTGTAGTGTTTGTTATAGATTTTTGTCTCTCTAAAGATTAAATTCTTTTGTAGGTAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATCCAAGTACATCATCAAGAGCCCCTCTTTTTCCCAATACTTCCCTTCAGTTCTAGCACTCCATGTTTGCAACTAATTTTACATTTTACGTTCCTCTGATGTGTTGGTAAGGTGATAGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCTGCCTGTTCTTTCACCATCCTCCTGAAATTTTGAGTTCTAAGTATGATTTTATGATCAATTATTTATGGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCAGTATGTCTACTAATGTTTTCTTATTTATTGATGAATTTTTAAAATATTATTCTTTTCTGTTCTCGTAAAACCGTCACCCAAGGGGATATTGGATGAGAAGATCATACTACCCTCTCGACATATGCAATTCTAGTCACCAAATATCCTTCCCTTCCCCCGAACTCAAAAGTTCATCAACGATCCATACACCCAAAAGATCATATATTTTGCCGCTAACTGTCTGTTGCCAGTGTTCATCAGAATGATTTCTGTTCCTTGTCTTTGCAGCAATTCCTGAAAGAGATACTGAATGAGCTTTGTGTGTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAACCCGAATACAAGAAATCTGCTGAAGATACCGGCGGAGAGTAGTAGGTTAGTTTTTGACTGTGTCATCATATAAATTCCCTTCCTTTGGGGTAGGTGGAAACGATCCGAAATAAATCTGCTAATTAAGAGGGAAAAAGAATATTTTGCTTTGTTATATTTTCATGGGAGGGGAGAGATGGAGAATGAAAAGAAGTTGGTTTAAAATAATTGCTAGGTAGCTTTATACTAAAGTGAAACCAAAGGTGAAAATGGAAGTTGGGGTGGAGAGTTCTTATGGCATGTTTTTTCAATTGCGTACAAGGTCGTCGGAAGTTGCAAAATGAATCTGTATAATGGATTTTATGAGCATGCGAAGATGATGGAAAACAGATTTCATAAACTTGATTGTTCATTTGGCTTTTATTTGCTTAGTGTTTTTCTAATTACTAGTCAAGGATTTTTTTTTTT

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGAGAGATTTTGTAAGTTAATAGACATGGAAGATGAGCAGGGCGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTCTCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAATCCTCTTCTCTACAGGATTATTTGTTTTCTTGGGCTTCAAATCTTGTGAATTATGTTGTTTCGGATTATAAGGGGAATGTGATTAGTTTAGTTATCTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCCTAAATATGTTTAAAGACTTTGTTCCAATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATCCAAGTGATAGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCCTGAAAGAGATACTGAATGAGCTTTGTGTGTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAACCCGAATACAAGAAATCTGCTGAAGATACCGGCGGAGAGTAGTAGGTTAGTTTTTGACTGTGTCATCATATAAATTCCCTTCCTTTGGGGTAGGTGGAAACGATCCGAAATAAATCTGCTAATTAAGAGGGAAAAAGAATATTTTGCTTTGTTATATTTTCATGGGAGGGGAGAGATGGAGAATGAAAAGAAGTTGGTTTAAAATAATTGCTAGGTAGCTTTATACTAAAGTGAAACCAAAGGTGAAAATGGAAGTTGGGGTGGAGAGTTCTTATGGCATGTTTTTTCAATTGCGTACAAGGTCGTCGGAAGTTGCAAAATGAATCTGTATAATGGATTTTATGAGCATGCGAAGATGATGGAAAACAGATTTCATAAACTTGATTGTTCATTTGGCTTTTATTTGCTTAGTGTTTTTCTAATTACTAGTCAAGGATTTTTTTTTTT

Coding sequence (CDS)

ATGGAAGATGAGCAGGGCGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTCTCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAATCCTCTTCTCTACAGGATTATTTGTTTTCTTGGGCTTCAAATCTTGTGAATTATGTTGTTTCGGATTATAAGGGGAATGTGATTAGTTTAGTTATCTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCCTAAATATGTTTAAAGACTTTGTTCCAATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATCCAAGTGATAGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCCTGAAAGAGATACTGAATGAGCTTTGTGTGTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAACCCGAATACAAGAAATCTGCTGAAGATACCGGCGGAGAGTAG

Protein sequence

MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE
Homology
[Close]
BLAST of Clc08G15180 vs. NCBI nr
Match: XP_022144312.1 (transcription initiation factor IIF subunit beta [Momordica charantia])

HSP 1 Score: 496.9 bits (1278), Expect = 1.2e-136
Identity = 255/287 (88.85%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE GGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 63  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 122

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGKMSMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 123 MCVFSEASQGKMSMEGKVEHKFDMKPHGENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 182

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 183 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 242

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS E+TGGE
Sbjct: 243 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE 262

[Close]
BLAST of Clc08G15180 vs. NCBI nr
Match: XP_008444765.1 (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] >KAA0065193.1 transcription initiation factor IIF subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 496.9 bits (1278), Expect = 1.2e-136
Identity = 254/287 (88.50%), Postives = 257/287 (89.55%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Clc08G15180 vs. NCBI nr
Match: XP_004152667.1 (transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 hypothetical protein Csa_021785 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 4.5e-136
Identity = 254/287 (88.50%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Clc08G15180 vs. NCBI nr
Match: XP_038884084.1 (transcription initiation factor IIF subunit beta-like [Benincasa hispida])

HSP 1 Score: 495.0 bits (1273), Expect = 4.5e-136
Identity = 256/287 (89.20%), Postives = 257/287 (89.55%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE  GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDE-NGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 259

[Close]
BLAST of Clc08G15180 vs. NCBI nr
Match: XP_023002475.1 (transcription initiation factor IIF subunit beta [Cucurbita maxima])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 253/287 (88.15%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE  GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDE-NGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKDKRKVAPVKQPEVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 259

[Close]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match: O94424 (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfg2 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.7e-18
Identity = 81/283 (28.62%), Postives = 122/283 (43.11%), Query Frame = 0 

Query: 2   EDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 61
           E++      + +LD G+    VWL+K P  +   W S P  D   L  V +  D +Q   
Sbjct: 11  EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPEDDAANLGCVRVKNDEIQLLL 70

Query: 62  SSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPM 121
            +S                                     E  +VPK ++L +   FV  
Sbjct: 71  QNS------------------------------------PENADVPKIYNLRVMNKFVRN 130

Query: 122 CVFSEASQGKMSME-----GKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVID 181
                 S+   SM+     G V H+ ++ P     + Y ++ ++R   +    R++Q+ID
Sbjct: 131 SYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMID 190

Query: 182 NDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNW 241
            DRG  +   PG +G  S ST+   + V P     +K +R  R EL DI+FK FE    W
Sbjct: 191 -DRGGSLL-APGTLGSRSRSTTSFIRNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYW 250

Query: 242 ALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
            LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK
Sbjct: 251 TLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYK 253

[Close]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match: Q03123 (General transcription factor IIF subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-15
Identity = 68/271 (25.09%), Postives = 129/271 (47.60%), Query Frame = 0 

Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQ-----SDESSSLQD 72
           +L+  K +  +WL+K P  +A+ W        +   +++ +    +     ++E +S+QD
Sbjct: 9   DLNGAKQNTGMWLVKLPKYLAQQWAKATGRGEVGKLRIVKNQGKTEVSFTLNEELASIQD 68

Query: 73  YLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA 132
                AS+LV+               F ++  G +T  V         +D     V    
Sbjct: 69  IGGKPASSLVSTPREH---------PFLLQSVGGQTLTVLTESLSGQSEDKSENRVID-- 128

Query: 133 SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMP 192
              K+++EG V H+ + +P +   + Y ++ R++  +S    RQ Q ++     + +P+ 
Sbjct: 129 ---KLALEGIVVHRAECRPAAS--DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV- 188

Query: 193 GMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 252
                  S  +   +    K+ D KR R D+ ++ D++F  FE+   + +K LV  T QP
Sbjct: 189 -------SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQP 248

Query: 253 AQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
             +LKEIL ++ +YN +GT++ T+ELKPEY+
Sbjct: 249 VTYLKEILRDIGIYNMKGTHKNTWELKPEYR 255

[Close]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match: P41900 (General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-14
Identity = 70/277 (25.27%), Postives = 129/277 (46.57%), Query Frame = 0 

Query: 2   EDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 61
           ED++       +LD   A R VWL+K P  +A+ W+  P +  + + K+ ++  P Q  +
Sbjct: 4   EDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTN--MDVGKLRINKTPGQKAQ 63

Query: 62  SSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPM 121
            S          S     +  D +  + +  I  +     +T  V    + +  K+    
Sbjct: 64  VS---------LSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTT 123

Query: 122 CVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGV 181
              ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +
Sbjct: 124 SA-AQPDNEKLYMEGRIVQKLECRPIADN--CYMKLKLESIRKASEPQRRVQPIDK---I 183

Query: 182 HMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLV 241
                P      +   +E+KK      ++ K+ R D+  + D++F  FE+   + +K LV
Sbjct: 184 VQNFKPVKDHAHNIEYRERKK------AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLV 243

Query: 242 QETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
           + T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Sbjct: 244 KITNQPISYLKEILKDVCDYNMKNPHKNMWELKKEYR 257

[Close]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-14
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 0 

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           + VF+E+S  K+S+EG V  + + +P +   E Y KL R +  +S    R  Q +D    
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVT 152

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
            + +P+      I    K+K+        D KR R D+  + D++F  FE+   + LK L
Sbjct: 153 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 212

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
           V  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct: 213 VDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240

[Close]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match: P13984 (General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-14
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 0 

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           + VF+E+S  K+S+EG V  + + +P +   E Y +L R +  +S    R  Q +D    
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVT 152

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
            + +P+      I    K+K+        D KR R D+  + D++F  FE+   + LK L
Sbjct: 153 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 212

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
           V  T QP  +LKEIL E+ V N +G ++ T+ELKPEY+
Sbjct: 213 VDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240

[Close]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match: A0A5A7VAJ9 (Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005300 PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.7e-137
Identity = 254/287 (88.50%), Postives = 257/287 (89.55%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match: A0A6J1CTB7 (Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 GN=LOC111014025 PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.7e-137
Identity = 255/287 (88.85%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE GGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 63  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 122

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGKMSMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 123 MCVFSEASQGKMSMEGKVEHKFDMKPHGENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 182

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 183 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 242

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS E+TGGE
Sbjct: 243 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE 262

[Close]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match: A0A1S3BBV5 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103488014 PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.7e-137
Identity = 254/287 (88.50%), Postives = 257/287 (89.55%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match: A0A0A0LRL0 (Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=Csa_2G363560 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 254/287 (88.50%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match: A0A6J1KP21 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496301 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.3e-135
Identity = 253/287 (88.15%), Postives = 256/287 (89.20%), Query Frame = 0 

Query: 1   MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE  GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDE-NGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVP 120
           ESSSLQ                           FKMEMAGTETGNVPKSFSLNMFKDFVP
Sbjct: 61  ESSSLQ---------------------------FKMEMAGTETGNVPKSFSLNMFKDFVP 120

Query: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180
           MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG
Sbjct: 121 MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRG 180

Query: 181 VHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
           VHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 VHMRPMPGMVGLISSTSKDKRKVAPVKQPEVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 259

[Close]
BLAST of Clc08G15180 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 341.3 bits (874), Expect = 7.7e-94
Identity = 179/285 (62.81%), Postives = 208/285 (72.98%), Query Frame = 0 

Query: 13  NLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVILSLDPLQSDESS 72
           NLD  K+DRS+WLMKCP++V K+W         S   SD P  +AK++  +DPL+ D   
Sbjct: 6   NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSPP 65

Query: 73  SLQDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPMCV 132
                                         FKM M G E GN+PK ++LNMF DFVPM  
Sbjct: 66  E-----------------------------FKMYMVGAEYGNMPKCYALNMFTDFVPMGG 125

Query: 133 FSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHM 192
           FS+ +QG  + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHM
Sbjct: 126 FSDVNQGCAAAEGKVDHKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHM 185

Query: 193 RPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE 252
           RPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDRGELE IMFKLFE QPNW LKQLVQE
Sbjct: 186 RPMPGMLGLVSSNSKEKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQE 245

Query: 253 TDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAE-DTGGE 288
           TDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKSAE DTGG+
Sbjct: 246 TDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]
BLAST of Clc08G15180 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-76
Identity = 149/278 (53.60%), Postives = 196/278 (70.50%), Query Frame = 0 

Query: 14  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSL 73
           L+TG A+RS+ LMK P LVA S QSH        P DP  P AKVIL +DPL  ++  + 
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDEGTQ 82

Query: 74  QDYLFSWASNLVNYVVSDYKGNVISLVIFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFS 133
                                       F ME+A  ++GN+P+ ++L+M KDF+PM VF 
Sbjct: 83  ----------------------------FVMELARADSGNMPRRYTLDMSKDFIPMNVFC 142

Query: 134 EASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRP 193
           E+S GKMS+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRP
Sbjct: 143 ESSDGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRP 202

Query: 194 MPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 253
           MPGM+  I + + EKKK+   + S++KRTRRDR E+E++MF LFERQ NW L+ L+QETD
Sbjct: 203 MPGMI--IPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETD 262

Query: 254 QPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAED 284
           QP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Sbjct: 263 QPEQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 269

The following BLAST results are available for this feature:
BLAST of Clc08G15180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144312.11.2e-13688.85transcription initiation factor IIF subunit beta [Momordica charantia][more]
XP_008444765.11.2e-13688.50PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] ... [more]
XP_004152667.14.5e-13688.50transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 h... [more]
XP_038884084.14.5e-13689.20transcription initiation factor IIF subunit beta-like [Benincasa hispida][more]
XP_023002475.11.1e-13488.15transcription initiation factor IIF subunit beta [Cucurbita maxima][more]
BLAST of Clc08G15180 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O944248.7e-1828.62Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (s... [more]
Q031235.3e-1525.09General transcription factor IIF subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2f2 P... [more]
P419003.4e-1425.27General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN... [more]
Q8R0A03.4e-1434.18General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE... [more]
P139845.9e-1434.18General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=... [more]
BLAST of Clc08G15180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VAJ95.7e-13788.50Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1CTB75.7e-13788.85Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 ... [more]
A0A1S3BBV55.7e-13788.50Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LRL02.2e-13688.50Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=C... [more]
A0A6J1KP215.3e-13588.15Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=... [more]
BLAST of Clc08G15180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G75510.17.7e-9462.81Transcription initiation factor IIF, beta subunit [more]
AT3G52270.11.1e-7653.60Transcription initiation factor IIF, beta subunit [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040450TFIIF beta subunit, HTH domainPFAMPF02270TFIIF_betacoord: 215..278
e-value: 1.5E-20
score: 73.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 213..280
e-value: 4.6E-35
score: 121.5
IPR003196Transcription initiation factor IIF, beta subunitPANTHERPTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2coord: 1..283
NoneNo IPR availablePANTHERPTHR10445:SF2TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNITcoord: 1..283
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 213..279
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 11..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G15180.2Clc08G15180.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
biological_process GO:0006366 transcription by RNA polymerase II
cellular_component GO:0005674 transcription factor TFIIF complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003743 translation initiation factor activity