Clc08G15120 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G15120
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionpentatricopeptide repeat-containing protein At1g25360-like
LocationClcChr08: 25976472 .. 25977318 (+)
RNA-Seq ExpressionClc08G15120
SyntenyClc08G15120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAAAGCTGGGGTTAGCATGGGGATCTTTGGACATGTGCATTGTGGTCTTTTCGAGGATGCCTCGAACACTCTTTATAGAAATGCGTTTGATTGGAGTCCACCACTACGACTTCACCTATACTAGTGTGATCAGTGCTTGTGCCAATGGTGATATTTTCTCAACAGGTGCACATGCTTTCATTTTAAAAAGTACGCTGAACCCAAATCATATGATATAATTCTTTTTCATAATACATTGATTACTTCGTATTGGAAGTATATATGGTGAAGTTGATGGGCCACGAAAGACTTTGTGAGATGCCAGTAAAAGATATTTGTAATGATTTTTTTTTAAAAGGTAAGAATTAGTGGAAACATAATTTGCAAGCAATATAGAGTAGTGCGTAAACTAACGGAGCAGAATTTCAAAGGTTAATGGTAGAAGTTAGTGCATTAGTGTTTTGTTAGTTATTATTTTTCCTATAAATACTTGTAATGTTTCTACTTCAATGAACACAAAACTCAATTGAAATACTTGGTCTTTCATGCAATATTTTTCTCTTGGTTTTTGTTGTTTTTCTTACATGGACTATGATGATTTCAAGACTAGCACAACATGTCTTTAGGGAAGAGGTTTGAAGCTTTTTAGCCAAATGAGGTTAGATGATTATGCAATTTACAGCTTGGTCTGTGCTTGGGAGCATTGGAGAATGCTCGCTAGCTCCATGCTTAGTTTGTTCATCTTGGCGAAGCCTCTTAGTTGACAAGGCAATGATCTTAATGGATGCAAGATTTGGAGTGGTCGAAGCTGCAAGATTTGTGTTCCTGAGCATGCCCTTTTGTAGTTCTCTCTGCTTGTAG

mRNA sequence

ATGACTGAAAAGCTGGGGTTAGCATGGGGATCTTTGGACATGTGCATTGTGGTCTTTTCGAGGATGCCTCGAACACTCTTTATAGAAATGCGTTTGATTGGAGTCCACCACTACGACTTCACCTATACTAGTGTGATCAGTGCTTGTGCCAATGGTGATATTTTCTCAACAGCTTGGTCTGTGCTTGGGAGCATTGGAGAATGCTCGCTAGCTCCATGCTTAGTTTGTTCATCTTGGCGAAGCCTCTTAGTTGACAAGGCAATGATCTTAATGGATGCAAGATTTGGAGTGGTCGAAGCTGCAAGATTTGTGTTCCTGAGCATGCCCTTTTGTAGTTCTCTCTGCTTGTAG

Coding sequence (CDS)

ATGACTGAAAAGCTGGGGTTAGCATGGGGATCTTTGGACATGTGCATTGTGGTCTTTTCGAGGATGCCTCGAACACTCTTTATAGAAATGCGTTTGATTGGAGTCCACCACTACGACTTCACCTATACTAGTGTGATCAGTGCTTGTGCCAATGGTGATATTTTCTCAACAGCTTGGTCTGTGCTTGGGAGCATTGGAGAATGCTCGCTAGCTCCATGCTTAGTTTGTTCATCTTGGCGAAGCCTCTTAGTTGACAAGGCAATGATCTTAATGGATGCAAGATTTGGAGTGGTCGAAGCTGCAAGATTTGTGTTCCTGAGCATGCCCTTTTGTAGTTCTCTCTGCTTGTAG

Protein sequence

MTEKLGLAWGSLDMCIVVFSRMPRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTAWSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMPFCSSLCL
Homology
[Close]
BLAST of Clc08G15120 vs. NCBI nr
Match: XP_022144208.1 (pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144209.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144210.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144211.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144212.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144213.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144365.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144367.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144368.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144369.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144370.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144371.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144372.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144373.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 49/111 (44.14%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRMPR--TLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW S+    V         TLF +MRL+GV H +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNSMISGYVHHGLFQEALTLFRKMRLLGVQHDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             V   I +  L P    +    L V  A+I +  +FG V+ AR +F  MP
Sbjct: 309 KQVHAYILKNELNP----NHDFILSVSNALITLYWKFGKVDGARKIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. NCBI nr
Match: XP_038886633.1 (pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTE L +AW ++    V         TLF +MRL+GV H +FTYTSVISACANG  F   
Sbjct: 249 MTEHLSVAWNAMISGYVHHGLFEDALTLFRKMRLLGVQHDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             V   I +  L P    +    L V  A+I +  ++G V+ AR +F  MP
Sbjct: 309 KEVHAYILKNELNP----NHDFLLSVSNALITLYWKYGKVDGARKIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. NCBI nr
Match: KAG7020472.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW ++    V         TLF +MRLIGV   +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRLIGVELDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             +   I +  L P    +    L V  ++I +  ++G V+ AR +F  MP
Sbjct: 309 KELHAYILKNELNP----NHDFLLSVSNSLITLYWKYGKVDGARHIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. NCBI nr
Match: KAG6585558.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW ++    V         TLF +MRLIGV   +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRLIGVELDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             +   I +  L P    +    L V  ++I +  ++G V+ AR +F  MP
Sbjct: 309 KELHAYILKNELNP----NHDFLLSVSNSLITLYWKYGKVDGARHIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. NCBI nr
Match: XP_022951057.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW ++    V         TLF +MR +GV   +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             +   I +  L P    +    L V  ++I +  ++G V+ AR +F  MP
Sbjct: 309 KELHAYILKNELNP----NHDFLLSVSNSLITLYWKYGKVDGARHIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 49/111 (44.14%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRMPR--TLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW S+    V         TLF +MRL+GV H +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNSMISGYVHHGLFQEALTLFRKMRLLGVQHDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             V   I +  L P    +    L V  A+I +  +FG V+ AR +F  MP
Sbjct: 309 KQVHAYILKNELNP----NHDFILSVSNALITLYWKFGKVDGARKIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match: A0A6J1GGL5 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata OX=3662 GN=LOC111454019 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW ++    V         TLF +MR +GV   +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             +   I +  L P    +    L V  ++I +  ++G V+ AR +F  MP
Sbjct: 309 KELHAYILKNELNP----NHDFLLSVSNSLITLYWKYGKVDGARHIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match: A0A6J1KSZ4 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima OX=3661 GN=LOC111496149 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRM--PRTLFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           MTEKLG+AW ++    V         TLF +MR +GV   +FTYTSVISACANG  F   
Sbjct: 249 MTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGGFFQLG 308

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             +   I +  L P    +    L V  ++I +  ++G V+ AR +F  MP
Sbjct: 309 KELHAYILKNELNP----NHDFLLSVSNSLITLYWKYGKVDGARNIFYEMP 355

[Close]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match: A0A4V3WIV9 (DYW_deaminase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_013027 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRMPRTL--FIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           M EKL +AW ++    V  S +P  L  F +M L G+ H +FTYTSV+SACAN  +F   
Sbjct: 265 MNEKLVVAWNAMISGYVHNSFVPEALEMFRKMHLSGIKHDEFTYTSVLSACANAGLF--- 324

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             + G      +      S   SL V+ A+I +  + G V+ AR +F SMP
Sbjct: 325 --LHGKQVHAYILRMEKLSQDVSLSVNNALITLYWKCGKVDEARLIFSSMP 370

[Close]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match: A0A5N5G905 (Non-specific serine/threonine protein kinase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019780 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 1   MTEKLGLAWGSLDMCIVVFSRMPRT--LFIEMRLIGVHHYDFTYTSVISACANGDIFSTA 60
           M EKL +AW ++    V          LF +MRL+G+H  +FTYTSVISACAN  +F   
Sbjct: 654 MDEKLEVAWNAMISGYVRHDSFQEALLLFRKMRLLGIHQDEFTYTSVISACANIGLFQLG 713

Query: 61  WSVLGSIGECSLAPCLVCSSWRSLLVDKAMILMDARFGVVEAARFVFLSMP 110
             V   I      P L      SL V+ A+I +  +   ++ AR++F +MP
Sbjct: 714 KQVHAYILRTEAKPTLDF----SLSVNNALITLYYKCRKLDEARYIFNNMP 760

The following BLAST results are available for this feature:
BLAST of Clc08G15120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144208.12.2e-0944.14pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]... [more]
XP_038886633.14.6e-0740.54pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida][more]
KAG7020472.16.0e-0740.54Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6585558.16.0e-0740.54Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022951057.13.0e-0638.74pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata][more]
BLAST of Clc08G15120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CRF61.1e-0944.14pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti... [more]
A0A6J1GGL51.4e-0638.74pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata... [more]
A0A6J1KSZ42.5e-0638.74pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima O... [more]
A0A4V3WIV92.7e-0537.84DYW_deaminase domain-containing protein OS=Camellia sinensis var. sinensis OX=54... [more]
A0A5N5G9053.6e-0536.94Non-specific serine/threonine protein kinase OS=Pyrus ussuriensis x Pyrus commun... [more]
BLAST of Clc08G15120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G15120.1Clc08G15120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016301 kinase activity