Clc08G14880 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G14880
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	WEB family protein
Location	ClcChr08: 25780982 .. 25781944 (-)
RNA-Seq Expression	Clc08G14880
Synteny	Clc08G14880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGGCGACGTCTTCCCAATTCTTCTATAAACTCTTCGGGCTCTTCCCAAACACCAGAACAAGCTATCCACGGAAAATAAGAACCAACTAATCCTCATTCCGCATACCATATCCTCGTAACCAAACACTTCTCAAGAGGGAGTCACAATTCTCATATGAAGAAGAATCCGGCCGTTTCGATGACGCCAAAATCAAACGGAGCAAACAGCTTCGTCATTCGCGTGAAGGATGATCAAGAGGATTACAGAGGAGGAAGTCCCGCTGCAAGCATCACTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTCTGATGCGATTCATATTATATTTTCCTTCTCGAGGTTCGTCGGCGTCGGCGTTTATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGCTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGTATTGAGTTCTTTAACAAGTCGTCGCAGGATCAAATCGGCGTCGACGAAGGCAGAATCTCCGATGCAAATGCGATGGTATGAATGTGATGATATAATGATACACATACATGTATGTACGTACACACACGAAGCGTTAATTCGATGTTGAATCGTTTCGATTCTCTGATTTTGAGGTCTCAACAAACAAGTTTAATAGGCGAATTCGATTTTGAATCTGCTTTTTTACAGATTGCCGTCGCTGTTTCTGTGGTTTGAGACTGCAACAGAGTATCGATTGTCGCTATTTTCAGTTTCTATTTTCTTTTTCACGTTTGTCGGTTTGTCGTAACTTTTCGATTTCAATTTGATTGGAAGTTTTGTGGAAGAAAAGAATTTGCGCGCTCTACAACGACGAGTTTTTAAGCAAGAACAATATGAATAGACGTTTTAATCTATATTCGTGTACGAAAGTTTCTACAAAATGTTTATAACATTACCCGCTCTTTCTTGTTCTTAG

mRNA sequence

TTCGGCGACGTCTTCCCAATTCTTCTATAAACTCTTCGGGCTCTTCCCAAACACCAGAACAAGCTATCCACGGAAAATAAGAACCAACTAATCCTCATTCCGCATACCATATCCTCGTAACCAAACACTTCTCAAGAGGGAGTCACAATTCTCATATGAAGAAGAATCCGGCCGTTTCGATGACGCCAAAATCAAACGGAGCAAACAGCTTCGTCATTCGCGTGAAGGATGATCAAGAGGATTACAGAGGAGGAAGTCCCGCTGCAAGCATCACTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTCTGATGCGATTCATATTATATTTTCCTTCTCGAGGTTCGTCGGCGTCGGCGTTTATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGCTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGTATTGAGTTCTTTAACAAGTCGTCGCAGGATCAAATCGGCGTCGACGAAGGCAGAATCTCCGATGCAAATGCGATGATTGCCGTCGCTGTTTCTGTGGTTTGAGACTGCAACAGAGTATCGATTGTCGCTATTTTCAGTTTCTATTTTCTTTTTCACGTTTGTCGGTTTGTCGTAACTTTTCGATTTCAATTTGATTGGAAGTTTTGTGGAAGAAAAGAATTTGCGCGCTCTACAACGACGAGTTTTTAAGCAAGAACAATATGAATAGACGTTTTAATCTATATTCGTGTACGAAAGTTTCTACAAAATGTTTATAACATTACCCGCTCTTTCTTGTTCTTAG

Coding sequence (CDS)

ATGAAGAAGAATCCGGCCGTTTCGATGACGCCAAAATCAAACGGAGCAAACAGCTTCGTCATTCGCGTGAAGGATGATCAAGAGGATTACAGAGGAGGAAGTCCCGCTGCAAGCATCACTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTCTGATGCGATTCATATTATATTTTCCTTCTCGAGGTTCGTCGGCGTCGGCGTTTATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGCTCGAATTACTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGTATTGAGTTCTTTAACAAGTCGTCGCAGGATCAAATCGGCGTCGACGAAGGCAGAATCTCCGATGCAAATGCGATGATTGCCGTCGCTGTTTCTGTGGTTTGA

Protein sequence

MKKNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSRGSSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGVDEGRISDANAMIAVAVSVV

Homology

[Close]

BLAST of Clc08G14880 vs. NCBI nr
Match: KAA0065168.1 (hypothetical protein E6C27_scaffold82G005050 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 3   KNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSR 62
           KNPAVS  PKSNGAN+FVI VKDDQ+DYRGGSPA  I+PARI+SRIRRVLMRFI Y PSR
Sbjct: 2   KNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPSR 61

Query: 63  GSSASA-----FMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 122
           GSSA+A     F A KQ+NLEKFEPPKTSCSS+YSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 62  GSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQIG 121

Query: 123 VDEGRISDANAMI 131
           VDEGRISDANAM+
Sbjct: 122 VDEGRISDANAMV 134

[Close]

BLAST of Clc08G14880 vs. NCBI nr
Match: KAE8652124.1 (hypothetical protein Csa_022629 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 5.0e-53
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 3   KNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSR 62
           KNPAVS  PKSNGANSFV+ VKDDQ+DYRGGSPA  I+PARILSRIRRV MRFI Y PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGVDEGR 122
           GS+A+A  A KQRNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIGVDEGR
Sbjct: 62  GSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEGR 121

Query: 123 ISDANAM 130
           ISDANAM
Sbjct: 122 ISDANAM 128

[Close]

BLAST of Clc08G14880 vs. NCBI nr
Match: XP_022996993.1 (uncharacterized protein LOC111492057 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-50
Identity = 107/133 (80.45%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFP 60
           M+KNPAVS+ PKSNGANSF+I V+DDQEDYRGGSP  SI+P R LSRIRR+LMRF+ YFP
Sbjct: 1   MEKNPAVSIRPKSNGANSFIINVEDDQEDYRGGSPGVSISPVRFLSRIRRILMRFMFYFP 60

Query: 61  SRGSS---ASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120
           SRGSS   +S+ MASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 61  SRGSSSSPSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120

Query: 121 VDEGRISDANAMI 131
                ISDANAM+
Sbjct: 121 -----ISDANAMV 128

[Close]

BLAST of Clc08G14880 vs. NCBI nr
Match: KAG7029433.1 (hypothetical protein SDJN02_07772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFP 60
           M+KNPAVS+  KSNGANSF+I V+DDQEDYRGGSP  SI+PAR LSRIRR+LMRF+ YFP
Sbjct: 1   MEKNPAVSIRQKSNGANSFIINVEDDQEDYRGGSPGVSISPARFLSRIRRILMRFMFYFP 60

Query: 61  SRG---SSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120
           SRG   SS+S+ MASK+RNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 61  SRGSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120

Query: 121 VDEGRISDANAMI 131
                ISDANAM+
Sbjct: 121 -----ISDANAMV 128

[Close]

BLAST of Clc08G14880 vs. NCBI nr
Match: KAG6598497.1 (hypothetical protein SDJN03_08275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFP 60
           M+KNPAVS+  KSNGANSF+I V+DDQED+RGGSP  SI+PAR LSRIRR+LMRF+ YFP
Sbjct: 1   MEKNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFP 60

Query: 61  SRG---SSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120
           SRG   SS+S+ MASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 61  SRGSSPSSSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120

Query: 121 VDEGRISDANAMI 131
                ISDANAM+
Sbjct: 121 -----ISDANAMV 128

[Close]

BLAST of Clc08G14880 vs. ExPASy TrEMBL
Match: A0A0A0LPF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368240 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 3   KNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSR 62
           KNPAVS  PKSNGANSFV+ VKDDQ+DYRGGSPA  I+PARILSRIRRV MRFI Y PSR
Sbjct: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61

Query: 63  GSSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGVDEGR 122
           GS+A+A  A KQRNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIGVDEGR
Sbjct: 62  GSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEGR 121

Query: 123 ISDANAMI 131
           ISDANAM+
Sbjct: 122 ISDANAMV 129

[Close]

BLAST of Clc08G14880 vs. ExPASy TrEMBL
Match: A0A5A7VC16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005050 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 3   KNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSR 62
           KNPAVS  PKSNGAN+FVI VKDDQ+DYRGGSPA  I+PARI+SRIRRVLMRFI Y PSR
Sbjct: 2   KNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPSR 61

Query: 63  GSSASA-----FMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 122
           GSSA+A     F A KQ+NLEKFEPPKTSCSS+YSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 62  GSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQIG 121

Query: 123 VDEGRISDANAMI 131
           VDEGRISDANAM+
Sbjct: 122 VDEGRISDANAMV 134

[Close]

BLAST of Clc08G14880 vs. ExPASy TrEMBL
Match: A0A6J1KCK5 (uncharacterized protein LOC111492057 OS=Cucurbita maxima OX=3661 GN=LOC111492057 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.7e-51
Identity = 107/133 (80.45%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MKKNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFP 60
           M+KNPAVS+ PKSNGANSF+I V+DDQEDYRGGSP  SI+P R LSRIRR+LMRF+ YFP
Sbjct: 1   MEKNPAVSIRPKSNGANSFIINVEDDQEDYRGGSPGVSISPVRFLSRIRRILMRFMFYFP 60

Query: 61  SRGSS---ASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120
           SRGSS   +S+ MASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG
Sbjct: 61  SRGSSSSPSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG 120

Query: 121 VDEGRISDANAMI 131
                ISDANAM+
Sbjct: 121 -----ISDANAMV 128

[Close]

BLAST of Clc08G14880 vs. ExPASy TrEMBL
Match: A0A6J1CRC4 (uncharacterized protein LOC111014042 OS=Momordica charantia OX=3673 GN=LOC111014042 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 97/129 (75.19%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 3   KNPAVSMTPKSNGANSFVIRVKDDQEDYRGGSPAASITPARILSRIRRVLMRFILYFPSR 62
           +NP V ++ K NGA+ FVI V+ DQEDYRGGS   S++PARILSRIRR+ MRFI YFPSR
Sbjct: 5   ENPTVPISHKPNGADGFVIHVR-DQEDYRGGSSGVSLSPARILSRIRRMFMRFIFYFPSR 64

Query: 63  GSSASAFMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSS-QDQIGVDEG 122
           GSS+S  MAS+QRNLEKFEPPKTSCSSNYSSYSHY+EAIADCIEFFNKSS Q+QIGV  G
Sbjct: 65  GSSSSPIMASRQRNLEKFEPPKTSCSSNYSSYSHYSEAIADCIEFFNKSSLQEQIGVG-G 124

Query: 123 RISDANAMI 131
           R SD NAM+
Sbjct: 125 RNSDGNAMV 131

[Close]

BLAST of Clc08G14880 vs. ExPASy TrEMBL
Match: A0A6A1UVD7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G002767 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-22
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 16  ANSFVIRVKDDQEDYRGGSP--------AASITPARILSRIRRVLMRFILYFPSRGSSAS 75
           A SFVI+V+  +   R  +P          + +  ++ +R R++LMR +   PSRGSSA+
Sbjct: 8   AESFVIQVRGCEAVDRHQAPHQTSVDSSEFNFSAMKLFNRFRKILMRLLFSLPSRGSSAA 67

Query: 76  AFM-ASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGVDEGRISD 126
           + M AS+Q+N ++FEPPKTSCSS YSS+SHYNEAIADCIEFFNKSS D+I +D+GR SD
Sbjct: 68  SGMTASRQKNCDRFEPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSHDEI-LDDGRKSD 125

[Close]

BLAST of Clc08G14880 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 43  RILSRIRRVLMRFILYFPSRGSSASAFMASKQRNLEKFEPPKTSCSSN-YSSYSHYNEAI 102
           ++  ++ ++LMR I +     S       S+  + E+FEPPK SCSS+ YSS+ HY+EAI
Sbjct: 2   KLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEAI 61

Query: 103 ADCIEFFNKSSQDQIGVDEGRI 124
           ADCIEFFNKSS       E R+
Sbjct: 62  ADCIEFFNKSSAMSCEDHEARL 83

The following BLAST results are available for this feature:

BLAST of Clc08G14880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065168.1	3.8e-53	83.46	hypothetical protein E6C27_scaffold82G005050 [Cucumis melo var. makuwa]	[more]
KAE8652124.1	5.0e-53	85.83	hypothetical protein Csa_022629 [Cucumis sativus]	[more]
XP_022996993.1	1.8e-50	80.45	uncharacterized protein LOC111492057 [Cucurbita maxima]	[more]
KAG7029433.1	1.5e-49	79.70	hypothetical protein SDJN02_07772, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598497.1	1.5e-49	79.70	hypothetical protein SDJN03_08275, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc08G14880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G14880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF9	1.1e-53	85.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368240 PE=4 SV=1	[more]
A0A5A7VC16	1.9e-53	83.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KCK5	8.7e-51	80.45	uncharacterized protein LOC111492057 OS=Cucurbita maxima OX=3661 GN=LOC111492057...	[more]
A0A6J1CRC4	3.0e-43	75.19	uncharacterized protein LOC111014042 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6A1UVD7	8.4e-22	52.94	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G002767 PE=4 SV=1	[more]

BLAST of Clc08G14880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	5.1e-11	45.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..137
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 16..126
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 16..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G14880.1	Clc08G14880.1	mRNA