Clc08G14620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G14620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	SKP1-like protein
Location	ClcChr08: 25569621 .. 25571307 (+)
RNA-Seq Expression	Clc08G14620
Synteny	Clc08G14620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTGGCCTTGGAGTCACAGACGATCAAGCACATGATCGAAGACGATTGCGCCGATAGTGGAATTCCCCTTCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCTAAGCCGGAGGATCGTACTGGCTCCGTTGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCTACCTTATTCGATCTCATTCTGGTTTGTCCATTCTACTTCCTTCAGTTTTCTTGCTTTTCCTTGGGGTTTTGTCTTTTTGCCTCTCTATCTATGCCTTCCCTCTGATTGTTTGGTTAATTTCGGGGTCTAGGGTTTCGGTGCTTCTTAGATTTCGGGTAAGGCTTTTTAGTATTTAATCGACGTTTGCATTAAATTGTTTTCTGTTTTGGTCTGATGCCTGAATGAGACATCACAAATTGTTAAATGGGATATTGCAAAATTACTAAAACGTGAATGCCTCCTGCAGTTTTATTTTCAACCTGGAGTCGATAGCGCACATTTATTGATTTATATGGGTTTGTATGGAAGGTTCATAAATTTTTGTCATTGGGAAGCCTTGATATATTAGGCGTTTGGCTGCAATCTTCGTTAGGAATTTGTACCACTGAATCGAATGAAGAAATTCTTAAACTAGCAGCAAAATAACCACACGGGTGTTCGGTGTAAATTGATGTAAATTTTTAAATGAGTACCCATGTAGTGTAGCTGAGGTAATTCGATGTAAATTGCTTATTTGCGGGTGGGATATTGTTGAATACTTTCTTTTTACCAGTTGAACTTGATCTTTCTGCATTGTTCGGGTTTTAATGAGTTTATTTCTACTTTTGATCCTTCCTTATAAGACTTGAATGTAATTGCAAGTTTGTTTGCACATTTGAATTTCTGTATCTATATTCCGAAGTTCTTTCTTTTTTGACTCTTGCTAATCATACCATTCTTATCCTATGTTATTCGTTCATGTGTGTTTGTGTTTTCAGTTATGGTTTATCTAACATTTATTGGTTCTTCTCAATTACTTCAAATTTTACTCCAGTTATTTCATCATCTTTTTGACAAACGAGTAACCAAGAAGTTCCCTTTTGTACTAGCATCATCTTATCCACCTGAATCCTTTTTGGATTGTGACTTATCTTTCTTGAGTTTGAGAAGATCTAAATGGTTTCCATTGAACCAATCCGCTTGCTACGTACACTTGAAAAGTATTGTATCTTTTTCCAAGAAATCCGCTTGCTACATATGTTATGAGCGAATATGGGTGAAGATGCTACTTCTATTTATTGAAAATTTTGCTTGAAATAGCGTCCCTCCCATTTGAAGCTCCCCAAAGTAGATCTATCATTGTTGGTCACTGTTCATATCTCTGCTCATCTTCTCTAATTGTGACGTGTGATAACAATGGTGAGAATCTTTGCAGGCTGCAAACTACCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACACCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAATGGGCCTTTGAATAA

mRNA sequence

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTGGCCTTGGAGTCACAGACGATCAAGCACATGATCGAAGACGATTGCGCCGATAGTGGAATTCCCCTTCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCTAAGCCGGAGGATCGTACTGGCTCCGTTGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCTACCTTATTCGATCTCATTCTGGCTGCAAACTACCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACACCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAATGGGCCTTTGAATAA

Coding sequence (CDS)

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTGGCCTTGGAGTCACAGACGATCAAGCACATGATCGAAGACGATTGCGCCGATAGTGGAATTCCCCTTCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCTAAGCCGGAGGATCGTACTGGCTCCGTTGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCTACCTTATTCGATCTCATTCTGGCTGCAAACTACCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACACCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAATGGGCCTTTGAATAA

Protein sequence

MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

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BLAST of Clc08G14620 vs. NCBI nr
Match: XP_004143010.1 (SKP1-like protein 1B [Cucumis sativus] >XP_022962289.1 SKP1-like protein 1B [Cucurbita moschata] >XP_022996879.1 SKP1-like protein 1B [Cucurbita maxima] >XP_023546968.1 SKP1-like protein 1B [Cucurbita pepo subsp. pepo] >XP_038886225.1 SKP1-like protein 1B [Benincasa hispida] >KGN62264.1 hypothetical protein Csa_018747 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 5.0e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

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BLAST of Clc08G14620 vs. NCBI nr
Match: KAG7029453.1 (SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 450 MSAGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 509

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 510 KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 569

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 570 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 606

[Close]

BLAST of Clc08G14620 vs. NCBI nr
Match: KAG6598516.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 106 MSAGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 165

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 166 KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 225

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 226 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 262

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BLAST of Clc08G14620 vs. NCBI nr
Match: XP_008445323.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0064846.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. NCBI nr
Match: KAG6585523.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.8 bits (787), Expect = 5.5e-80
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 431 MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 490

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDR GSV+DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 491 KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 550

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 551 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 587

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BLAST of Clc08G14620 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.2e-70
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRT--------------GSVDDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  + T              GS D+DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Clc08G14620 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVE--SPKPEDRTGSV--DDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE  + K E   G+   DDDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Clc08G14620 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.2e-64
Identity = 129/166 (77.71%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + ITLKSSDGE FEV+EAVA+ESQTI+HMIEDDCAD+GIPLPNVNSKILSKVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E-----SPKPEDRTGSV--------DDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLL 124
                 + K  D   S          +DLK WD++FVKVDQATLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Clc08G14620 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 7   ITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVE- 66
           ITL+S +G++FEV EAVA+ESQTI+HMIED CAD+GIPLPNV++KILSKVIEYC KHVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  -------------SPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLD 126
                        +P   +   +V+D+LKT+D+EFVKVDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of Clc08G14620 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-56
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPK----PEDRTGSVD-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS + D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Clc08G14620 vs. ExPASy TrEMBL
Match: A0A6J1K9X2 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491993 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. ExPASy TrEMBL
Match: A0A0A0LMK0 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G346050 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. ExPASy TrEMBL
Match: A0A6J1HGN0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462785 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. ExPASy TrEMBL
Match: A0A5A7VEU3 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001580 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. ExPASy TrEMBL
Match: A0A1S3BCE2 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103488389 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of Clc08G14620 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-71
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRT--------------GSVDDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  + T              GS D+DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Clc08G14620 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-66
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVE--SPKPEDRTGSV--DDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE  + K E   G+   DDDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Clc08G14620 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-58
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPK----PEDRTGSVD-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS + D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Clc08G14620 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 214.2 bits (544), Expect = 7.7e-56
Identity = 109/156 (69.87%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S + I L SSDG+ FEV+EAVA++SQTI HM+EDDC   GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 122
            HV+   P       ++DL  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADM
Sbjct: 62  HHVDEANPIS-----EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 121

Query: 123 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Clc08G14620 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FEV+EAVA+ESQTIKHMIEDDC D+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPK----PEDRTGSVDD-DLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS ++ +LKTWD++FVKVD  TLFDL+ AANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

The following BLAST results are available for this feature:

BLAST of Clc08G14620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143010.1	5.0e-81	100.00	SKP1-like protein 1B [Cucumis sativus] >XP_022962289.1 SKP1-like protein 1B [Cuc...	[more]
KAG7029453.1	1.1e-80	99.36	SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598516.1	1.1e-80	99.36	SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008445323.1	2.5e-80	99.36	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0064846.1 SKP1-like protein 1...	[more]
KAG6585523.1	5.5e-80	98.73	SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc08G14620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	3.2e-70	80.12	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	4.0e-65	79.25	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	1.2e-64	77.71	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	1.4e-62	74.55	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	1.2e-56	71.52	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of Clc08G14620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9X2	2.4e-81	100.00	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491993 PE=3 SV=1	[more]
A0A0A0LMK0	2.4e-81	100.00	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G346050 PE=3 SV=1	[more]
A0A6J1HGN0	2.4e-81	100.00	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462785 PE=3 SV=1	[more]
A0A5A7VEU3	1.2e-80	99.36	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001...	[more]
A0A1S3BCE2	1.2e-80	99.36	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103488389 PE=3 SV=1	[more]

BLAST of Clc08G14620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	2.2e-71	80.12	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	2.8e-66	79.25	S phase kinase-associated protein 1	[more]
AT1G20140.1	8.3e-58	71.52	SKP1-like 4	[more]
AT4G34210.1	7.7e-56	69.87	SKP1-like 11	[more]
AT2G25700.1	1.7e-55	68.35	SKP1-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..107 e-value: 2.3E-55 score: 199.9
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..157 e-value: 1.3E-69 score: 231.2
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..157
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..64 e-value: 3.8E-31 score: 107.1
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 2..157 e-value: 5.2E-77 score: 259.5
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..67
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 108..155 e-value: 2.0E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..157
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..122 e-value: 1.19286E-64 score: 191.651
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 80..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G14620.1	Clc08G14620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding