Clc08G14160 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G14160
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Poly(A)-specific ribonuclease
Location	ClcChr08: 25120271 .. 25124127 (-)
RNA-Seq Expression	Clc08G14160
Synteny	Clc08G14160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTGACTTATAAAGAAAATTTAGATAATTGCTGCCCAATCTTAAATCTCAATTTATGTTCAAAATTTAAAAAGAATGATATACAGTAATTTTGCTTACGAGAAAGTTCAAGAGTATAAAGAAAAAATTGAAATAAAGAGCAAAATTAAGGATATTTGTTAGTAAAAAAAAAAGAAAAAAAGAAAAAATTATATAGTGAATAAATTAAAAAGACAAAAAAAAAAAAAAAAAAAAAAAGTGAAAAAGAAAAAGGAGGGACGCCAAAATTGAACATGTAAAGAAAAGAGACTAAAAGACGGAAGGGGAGAGCGAAAGGGGGAAACGGCGTCGTATGTTTAGTAGATGTGGATCCACATGGAAACGACGTCGGATTGGGAAGTGTGAACATCACTTTCCCGTCGTCTACCAGGGCGTTGAGCAATGTTTTAGGGAGAGGGTGAGCGATTGGCGAGCTCTCTCTCAAACCCTGTCTTTCTCTTTTGCTGCTGTTTCTCCTCTCCTTCGTTGACCTCCTTCTCCTCCATTTCTACCAAAGCTCAATATACCACAACTCCCTTCTTCTAGATCTGCCTTCCCCACCTTTCAATTTCACAGTTTCCAGGTCAGATCTACTTACCCACTTCCTTTTTCTTTGCTTAAAATCACTTCATTTCTAGGGTTCTTCTTAACCCCCTTTTTGTTTCTTCCAGATCTGTTAACATTTCTTTACCTCCTTTACTCTGGCGTTGGTTTTCCGACGCCCCCACTTGTTTCTTCTCAGATCTCCACCTCTGTTCGCCATCTTTTTTCTAGGGTTTTGTTGTTTTGTTACTCCTATTGTGTTGACCTTGGAGGAATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAGGAGTTTGCGTTAATCCGTGAGATTGTCGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCGGGCGTTGTGCTTCGTCCTTTGGGTGCTTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAACTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGGGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAACTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAATAATGAAGAAGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGTGGTTTACCGAATGAGCAAGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTAATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAATTATTAGAAGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACTTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGACAATGGACAGCGTACTAATTGAAGAGAATTACAAAGTATTTGTAGAAGTGTGAGACTTTTAGTTACTTCTGTACAATTTGGCTAAAGCATTGATGATGATTGTAACTGTTTTCAGCTTTCCTGCTCTGTAATAGAAACCTCCGACTGTTTTTTGCAGCTTAGTGGTTTCTTGTAAATTATGTCAGTTAGTGTTTCAATAAGAATTTGAATGACGTTTCTTAGAATGAGTTTCCACTTGTTTTGTGAGCTTATTATGTTACATTTTCCTTTGGGTTCGTTAATCATGTAAGGCCCCAAAGGTATGTGGACTGATGCACATTATTGCCAATAGAACATATTTCTTTAACAACTGACTCCGTCTTTCATTTGTTTTCTCCTGCCCAAATGATGTGACTATTAATCTTTGTCACGGTAGATGCCATTACAATAGACACTGACAATAGTTGGATTGGATTGGAATCTAATAGGAACCATCAGCCTGTCTCAGTTCTTATAGTTAGATCAGTTTTCTGTCATATTGGACACTTTTTTTTTGGTCTCGGTAGTTGTTTGTATCTCATGGTTCTGCTCTGCAAGGCCCTCTGTATACCTTGATTGTTATGTGTTTCATTGTCTTGTAGTAAATTACTTATTTTCTTCCACTTCCTATAGAACATTTGCAGACTCTGTTAATACGTATGTTTTGAGGTATCCCTATAGTTAAAATTTCATTTGGTGGTATGGTTGTAGAGTTTAGAGGTGTACCTGGTCTTGTCTTACCACATGATCTATCATTGGTTACATTTTGTTTTCTTATTTTATTCATGCAAGAAATTTCGAAAATCAGAATGGAAAACAAGGAGCCATGGAGATCTTACAGCCCTTTTATTTTTTCTTCAGGTATGCCGAGTTTCCTTTTCCCTGATTCAGTTCGGGCAGTTGGTTGATCTGTAGCTGTTACCCCCAACAGGCCTGACCCATGTTATCAATGCAAAACTAGATCGAATCCTCTGCACATCAGGTGAGTATTGTATACGCTTTAGTTTAAAACACTCACTTTGTAGCCACATCTGATGTGATTCAATGCATTTGCGACAATTTTGAAGAGATGTGCATCTTATCATAGTTTCATATACTAGTTTCAGCTGTCAAATCTCAATCATATTTTTCGACTTTTAACCGACTGCAGACTGCCTTGCCCTTTTGATCTGGTGGCAATGAAGCCACTAGAAATTTCTGCCACAGTGATCTTAAAAACTCTGAGATCTGATCATATATACATCTAAACCTGTTCACACTTGTTGTGTCTTTTGGTATTTGTAGACATGGCCAAGCTGGAAACCATGGAGGAAGAAGGGTTGAGAATTGGGAATTTGAGAAGGTATTTGACAGCAGCCAAACTTGAGCTCAAAGGGCAGATTCAAAACTTGATCCATTGTTTGATCTCATATTACCTGCCATTCTGAGCTGGATTAGAGTTTTTCTTTTCACCCCCCAAGGGATAAGGATTTGGATTTGATTTTGGTCATTGTTGGATCCACATTTTATGGTCATATTATTTATTATATGATATTGGGTGGCTTCCTATTCTGAAAAATAATTGTACCTAATCCTTTTTGTTTGAGAGAAAGAGAGTCATAGAAATGGGTTGCACATGCATATGCCTACTAATCATATGTGCACAGAATAAATTTAAGAAAGCCATTAATTTTCACTTGGATCGACATGCTCGTGCAGCTCAATAATGCTTCTTCTAAAATAGTGGTTTATTTGTGCACAGAATAATGCTTTTTCTAATATAGTGGTTGGCTCTTTGGAAAGAAATTGGCTAAGATTAGAAATCAAGTGAAAAATCAATTAACAGGGCTAAAGTTTGGGGTTGCGGTTGTCTTGGTTAAAATTTCAAACTAATGGTTTGATGAATATAAACTGTTAATTCACAGTTTTTACCCATGTACAAAGTTTTACTATAAAGAACCAAATTGATGGTCGTAGTTCATCAATTTGAGTATCATCTTCTCATTTTTCTATTTCTCTCTCTGATTCTTATATTTGAATCACTCACAAGAAGTCTAAATTAAAGTTAGAGTTTAAATTGATAATGTTATTATATTTGAATTTTATTGTATAAATTCTAAAACTTTAGAAGTATAAATTTGAATTTTTTATTTGATTTTCTCTCTTGATTTCTTGGTTTGTTATTTCATTTGAAGGCTAATCATTGATTCGAAGTGA

mRNA sequence

ATGACAGAGACTAAAAGACGGAAGGGGAGAGCGAAAGGGGGAAACGGCGTCGTATGTTTAGTAGATGTGGATCCACATGGAAACGACGTCGGATTGGGAAGTGTGAACATCACTTTCCCGTCGTCTACCAGGGCGTTGAGCAATGTTTTAGGGAGAGGATCTGCCTTCCCCACCTTTCAATTTCACAGTTTCCAGGTCAGATCTACTTACCCACTTCCTTTTTCTTTGCTTAAAATCACTTCATTTCTAGGGTTCTTCTTAACCCCCTTTTTGTTTCTTCCAGATCTGTTAACATTTCTTTACCTCCTTTACTCTGGCGTTGGTTTTCCGACGCCCCCACTTGTTTCTTCTCAGATCTCCACCTCTGTTCGCCATCTTTTTTCTAGGGTTTTGTTGTTTTGTTACTCCTATTGTGTTGACCTTGGAGGAATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAGGAGTTTGCGTTAATCCGTGAGATTGTCGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCGGGCGTTGTGCTTCGTCCTTTGGGTGCTTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAACTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGGGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAACTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAATAATGAAGAAGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGTGGTTTACCGAATGAGCAAGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTAATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAATTATTAGAAGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACTTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGACAATGGACAGCACACTGACAATAGTTGGATTGGATTGGAATCTAATAGGAACCATCAGCCTGTCTCAGTTCTTATAGTTAGATCAGTTTTCTGTCATATTGGACACTTTTTTTTTGGTCTCGGTAGTTGTTTGTATCTCATGCTGTTACCCCCAACAGGCCTGACCCATGTTATCAATGCAAAACTAGATCGAATCCTCTGCACATCAGACATGGCCAAGCTGGAAACCATGGAGGAAGAAGGGTTGAGAATTGGGAATTTGAGAAGGCTAATCATTGATTCGAAGTGA

Coding sequence (CDS)

ATGACAGAGACTAAAAGACGGAAGGGGAGAGCGAAAGGGGGAAACGGCGTCGTATGTTTAGTAGATGTGGATCCACATGGAAACGACGTCGGATTGGGAAGTGTGAACATCACTTTCCCGTCGTCTACCAGGGCGTTGAGCAATGTTTTAGGGAGAGGATCTGCCTTCCCCACCTTTCAATTTCACAGTTTCCAGGTCAGATCTACTTACCCACTTCCTTTTTCTTTGCTTAAAATCACTTCATTTCTAGGGTTCTTCTTAACCCCCTTTTTGTTTCTTCCAGATCTGTTAACATTTCTTTACCTCCTTTACTCTGGCGTTGGTTTTCCGACGCCCCCACTTGTTTCTTCTCAGATCTCCACCTCTGTTCGCCATCTTTTTTCTAGGGTTTTGTTGTTTTGTTACTCCTATTGTGTTGACCTTGGAGGAATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAAGTATGGAACGCTAATTTGGAAGAGGAGTTTGCGTTAATCCGTGAGATTGTCGATGAGTTTAATTACATAGCTATGGATACTGAGTTCCCGGGCGTTGTGCTTCGTCCTTTGGGTGCTTTCAAGAATATCAATGATTACAACTACCGGACTCTTAAGGATAATGTTGAGATGTTGAAGTTGATTCAACTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACTGATAAGTTTTGCATTTGGCAGTTCAATTTCCGGGAGTTCAACATTGGTAATGATATTTTTGCTAGTGATTCCATCGAACTTCTTCGTCAGTGTGGTATTGATTTTCAGAAGAATAATGAAGAAGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGATGTGAACTGGGTGACGTTTCATAGTGGGTATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGTGGTTTACCGAATGAGCAAGCAGGTTTTTTTGAGTTGATCAATGTCTATTTTCCAGTGGTTTATGATATCAAGCATTTAATGAAGTTTTGCAACAGTCTCCATGGTGGGCTGAACAAGCTTGCGGAATTATTAGAAGTTGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGAATACTTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGACAATGGACAGCACACTGACAATAGTTGGATTGGATTGGAATCTAATAGGAACCATCAGCCTGTCTCAGTTCTTATAGTTAGATCAGTTTTCTGTCATATTGGACACTTTTTTTTTGGTCTCGGTAGTTGTTTGTATCTCATGCTGTTACCCCCAACAGGCCTGACCCATGTTATCAATGCAAAACTAGATCGAATCCTCTGCACATCAGACATGGCCAAGCTGGAAACCATGGAGGAAGAAGGGTTGAGAATTGGGAATTTGAGAAGGCTAATCATTGATTCGAAGTGA

Protein sequence

MTETKRRKGRAKGGNGVVCLVDVDPHGNDVGLGSVNITFPSSTRALSNVLGRGSAFPTFQFHSFQVRSTYPLPFSLLKITSFLGFFLTPFLFLPDLLTFLYLLYSGVGFPTPPLVSSQISTSVRHLFSRVLLFCYSYCVDLGGMSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTDNSWIGLESNRNHQPVSVLIVRSVFCHIGHFFFGLGSCLYLMLLPPTGLTHVINAKLDRILCTSDMAKLETMEEEGLRIGNLRRLIIDSK

Homology

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BLAST of Clc08G14160 vs. NCBI nr
Match: KAA0064893.1 (putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 604.0 bits (1556), Expect = 1.2e-168
Identity = 291/323 (90.09%), Postives = 302/323 (93.50%), Query Frame = 0


Query: 95  DLLTFLYLLYSGVGFPTPPLVSSQISTSVRHLFSRVLLFCYSYCVDLGGMSILPKGDSIQ 154
           DL   LY  YSGVGFPTP L S +I  SVR+LF       +SY VDLGGMSILPKGDSIQ
Sbjct: 12  DLEPLLYFPYSGVGFPTPTLASFEIPISVRYLFFTSFSISHSYRVDLGGMSILPKGDSIQ 71

Query: 155 IREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEM 214
           IREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+NYRTLKDNVEM
Sbjct: 72  IREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDFNYRTLKDNVEM 131

Query: 215 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKN 274
           LKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIELLRQCGIDFQKN
Sbjct: 132 LKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIELLRQCGIDFQKN 191

Query: 275 NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAGFFELIN 334
           NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN+QAGFFELIN
Sbjct: 192 NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFELIN 251

Query: 335 VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFF 394
           VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLR+TFF
Sbjct: 252 VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFF 311

Query: 395 NGSIQKYAGVLYGLGVDNGQHTD 418
           NGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 312 NGSIQKYAGVLYGLGVENGQRTN 334

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BLAST of Clc08G14160 vs. NCBI nr
Match: XP_038885551.1 (probable CCR4-associated factor 1 homolog 7 [Benincasa hispida])

HSP 1 Score: 563.5 bits (1451), Expect = 1.8e-156
Identity = 267/274 (97.45%), Postives = 273/274 (99.64%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDF 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NYRTLKDNV+MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL
Sbjct: 61  NYRTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN+DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNNDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           N+QAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
           CTFRKLR+TFFNGSIQKYAGVLYGLGVDNGQ T+
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVDNGQRTN 274

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BLAST of Clc08G14160 vs. NCBI nr
Match: XP_008445259.1 (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 555.8 bits (1431), Expect = 3.8e-154
Identity = 263/274 (95.99%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           N+QAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

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BLAST of Clc08G14160 vs. NCBI nr
Match: XP_004138704.1 (probable CCR4-associated factor 1 homolog 7 [Cucumis sativus] >KGN62988.1 hypothetical protein Csa_022642 [Cucumis sativus])

HSP 1 Score: 554.7 bits (1428), Expect = 8.4e-154
Identity = 262/274 (95.62%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           N+QAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

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BLAST of Clc08G14160 vs. NCBI nr
Match: KAG6598550.1 (putative CCR4-associated factor 1-like 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 551.6 bits (1420), Expect = 7.1e-153
Identity = 287/391 (73.40%), Postives = 305/391 (78.01%), Query Frame = 0


Query: 109 FPTPPLVSSQISTSVRHLF----SRVLLFCYSYCVDLGGMSILPKGDSIQIREVWNANLE 168
           F   P VSSQI + VR LF     RVL FC SY V LGGMSILPKGDSIQIREVWN NLE
Sbjct: 38  FSDAPSVSSQIPSPVRRLFFVLSLRVLSFCRSYRVHLGGMSILPKGDSIQIREVWNDNLE 97

Query: 169 EEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEMLKLIQLGLTF 228
           EEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDYNY+TLKDNV+MLKLIQLGLTF
Sbjct: 98  EEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDNVDMLKLIQLGLTF 157

Query: 229 SDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKNNEEGIDVNRF 288
           SDENGNLPTCGTD FCIWQFNFREFNI +DIFASDSIELLRQCGIDFQKNNEEGIDVNRF
Sbjct: 158 SDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCGIDFQKNNEEGIDVNRF 217

Query: 289 GELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAGFFELINVYFPVVYDIK 348
           GELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP +Q GFF+LINVYFPVVYDIK
Sbjct: 218 GELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDGFFDLINVYFPVVYDIK 277

Query: 349 HLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFFNGSIQKYAGV 408
           HLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA TFRKLR TFFNGSIQKYA  
Sbjct: 278 HLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRKLRTTFFNGSIQKYA-- 337

Query: 409 LYGLGVDNGQHTDNSWIGLESNRNHQPVSVLIVRSVFCHIGHFFFGLGSCLYLMLLPPTG 468
                       + S+ G+    N      ++   +      F   +       L     
Sbjct: 338 -----------ANVSFAGMIIELNCSLYGTVLAHDIALVTLSFLILIMHETQTYLWLGNS 397

Query: 469 LTHVINAKLDRILCTSDMA----KLETMEEE 492
            ++    ++DR LCTSDMA    KLET E E
Sbjct: 398 ESNERAMEIDRFLCTSDMAWSLSKLETKETE 415

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BLAST of Clc08G14160 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 6.5e-125
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 263
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 264 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 323
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 324 PNEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 383
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 384 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 415
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

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BLAST of Clc08G14160 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 5.5e-124
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 415
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of Clc08G14160 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.8e-122
Identity = 204/268 (76.12%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 149 KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 208
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 209 KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 268
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 269 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAG 328
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP +QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 329 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 388
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 389 LRNTFFNGSIQKYAGVLYGLGVDNGQHT 417
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]

BLAST of Clc08G14160 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 6.8e-98
Identity = 170/264 (64.39%), Postives = 208/264 (78.79%), Query Frame = 0


Query: 151 DSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 210
           D+I+IREVWN NLE+E ALI + +D+F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 211 YRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELL 270
           Y TLK NV MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 271 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN 330
           R+  ID +KNNE G+D  RF ELLM SGVVLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 331 EQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 390
           E + FF+ +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 391 TFRKLRNTFFNGSIQKYAGVLYGL 409
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of Clc08G14160 vs. ExPASy Swiss-Prot
Match: Q5ZJV9 (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus OX=9031 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.4e-81
Identity = 150/281 (53.38%), Postives = 196/281 (69.75%), Query Frame = 0


Query: 152 SIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDN 211
           S +I EVW  NL+EE   IR+++ ++NY+AMDTEFPGVV RP+G F++  DY Y+ L+ N
Sbjct: 9   SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68

Query: 212 VEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDF 271
           V++LK+IQLGLTF +E G  P  GT     WQFNF+ FN+  D++A DSIELL   GI F
Sbjct: 69  VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 128

Query: 272 QKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAGFFE 331
           +K+ EEGI+   F ELLM+SGVVL + V W++FHSGYDFGYL+K+LT   LP E+  FFE
Sbjct: 129 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 188

Query: 332 LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRN 391
           ++ ++FPV+YD+K+LMK C +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R 
Sbjct: 189 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 248

Query: 392 TFFNGSIQ--KYAGVLYGLGVDNGQHTDNSWIGLESNRNHQ 431
            FF   I   KY G LYGLG  +    + +    E   N Q
Sbjct: 249 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQ 284

[Close]

BLAST of Clc08G14160 vs. ExPASy TrEMBL
Match: A0A5A7V9Q6 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002070 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 5.8e-169
Identity = 291/323 (90.09%), Postives = 302/323 (93.50%), Query Frame = 0


Query: 95  DLLTFLYLLYSGVGFPTPPLVSSQISTSVRHLFSRVLLFCYSYCVDLGGMSILPKGDSIQ 154
           DL   LY  YSGVGFPTP L S +I  SVR+LF       +SY VDLGGMSILPKGDSIQ
Sbjct: 12  DLEPLLYFPYSGVGFPTPTLASFEIPISVRYLFFTSFSISHSYRVDLGGMSILPKGDSIQ 71

Query: 155 IREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTLKDNVEM 214
           IREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+NYRTLKDNVEM
Sbjct: 72  IREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDFNYRTLKDNVEM 131

Query: 215 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCGIDFQKN 274
           LKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIELLRQCGIDFQKN
Sbjct: 132 LKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIELLRQCGIDFQKN 191

Query: 275 NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAGFFELIN 334
           NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPN+QAGFFELIN
Sbjct: 192 NEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNDQAGFFELIN 251

Query: 335 VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRNTFF 394
           VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLR+TFF
Sbjct: 252 VYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFF 311

Query: 395 NGSIQKYAGVLYGLGVDNGQHTD 418
           NGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 312 NGSIQKYAGVLYGLGVENGQRTN 334

[Close]

BLAST of Clc08G14160 vs. ExPASy TrEMBL
Match: A0A1S3BD45 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.8e-154
Identity = 263/274 (95.99%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           N+QAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of Clc08G14160 vs. ExPASy TrEMBL
Match: A0A0A0LMH2 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 4.1e-154
Identity = 262/274 (95.62%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWNANLEEEFALIR IVD+FNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NYRTLKDNVEMLKLIQLGLTFSDE+GNLPTCGTDKFCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           N+QAGFFELINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
           CTFRKLR+TFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of Clc08G14160 vs. ExPASy TrEMBL
Match: A0A6J1KC39 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 9.3e-151
Identity = 258/274 (94.16%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NY+TLKDNV+MLKLIQLGLTFSDENGN PTCGTD FCIWQFNFREFNIG+DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNFPTCGTDNFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
            +Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
            TFRKLRNTFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of Clc08G14160 vs. ExPASy TrEMBL
Match: A0A6J1HCG0 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 3.5e-150
Identity = 258/274 (94.16%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           NY+TLKDNV+MLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI +DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
            +Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTD 418
            TFRKLRNTFFNGSIQKYAGVLYGLGV+NGQ T+
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of Clc08G14160 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 449.1 bits (1154), Expect = 4.6e-126
Identity = 207/272 (76.10%), Postives = 240/272 (88.24%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NLE E ALIRE+VD+F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNIGNDIFASDSIE 263
           +Y TLK NV +LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 264 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGL 323
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 324 PNEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 383
           P  Q GFFE+I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 384 ACTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 415
           +CTFRKL+  FF GS++KY+GVLYGLGV+NGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of Clc08G14160 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 446.0 bits (1146), Expect = 3.9e-125
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 415
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of Clc08G14160 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 446.0 bits (1146), Expect = 3.9e-125
Identity = 203/271 (74.91%), Postives = 237/271 (87.45%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQ 415
           CTFRKL+  FF G + KY+GVLYGLGV+NGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of Clc08G14160 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 442.2 bits (1136), Expect = 5.6e-124
Identity = 202/275 (73.45%), Postives = 237/275 (86.18%), Query Frame = 0


Query: 144 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDY 203
           MS+  K DSIQIREVWN NL+EE  LIR++VD+F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 204 NYRTLKDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 263
           +Y TLK NV +LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 264 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 323
           L+Q GID  KN  +GID  RF ELLMSSG+VLN++V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 324 NEQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 383
           + Q  FF+LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 384 CTFRKLRNTFFNGSIQKYAGVLYGLGVDNGQHTDN 419
           CTFRKL+  FF G + KY+GVLYGLGV+N  +  N
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENEANGKN 275

[Close]

BLAST of Clc08G14160 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 441.0 bits (1133), Expect = 1.3e-123
Identity = 204/268 (76.12%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 149 KGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYRTL 208
           K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+P+  FK  ND NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 209 KDNVEMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIELLRQCG 268
           K+NV++LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNIG DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 269 IDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLPNEQAG 328
           IDF+KN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP +QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 329 FFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 388
           FF+L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 389 LRNTFFNGSIQKYAGVLYGLGVDNGQHT 417
           L+  +F GS +KY GVLYGLGV++G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

The following BLAST results are available for this feature:

BLAST of Clc08G14160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064893.1	1.2e-168	90.09	putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa]	[more]
XP_038885551.1	1.8e-156	97.45	probable CCR4-associated factor 1 homolog 7 [Benincasa hispida]	[more]
XP_008445259.1	3.8e-154	95.99	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo]	[more]
XP_004138704.1	8.4e-154	95.62	probable CCR4-associated factor 1 homolog 7 [Cucumis sativus] >KGN62988.1 hypoth...	[more]
KAG6598550.1	7.1e-153	73.40	putative CCR4-associated factor 1-like 7, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Clc08G14160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKZ2	6.5e-125	76.10	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	5.5e-124	74.91	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	1.8e-122	76.12	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9S9P2	6.8e-98	64.39	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q5ZJV9	4.4e-81	53.38	CCR4-NOT transcription complex subunit 7 OS=Gallus gallus OX=9031 GN=CNOT7 PE=2 ...	[more]

BLAST of Clc08G14160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9Q6	5.8e-169	90.09	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BD45	1.8e-154	95.99	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1	[more]
A0A0A0LMH2	4.1e-154	95.62	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV...	[more]
A0A6J1KC39	9.3e-151	94.16	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 S...	[more]
A0A6J1HCG0	3.5e-150	94.16	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3...	[more]

BLAST of Clc08G14160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32070.1	4.6e-126	76.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	3.9e-125	74.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	3.9e-125	74.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	5.6e-124	73.45	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	1.3e-123	76.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 143..412 e-value: 2.1E-98 score: 330.8
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 158..279 e-value: 7.7E-11 score: 41.8
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 144..416
None	No IPR available	PANTHER	PTHR10797:SF68	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED	coord: 144..416
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 155..408

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G14160.2	Clc08G14160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity