Clc08G12970 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G12970
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease H2 subunit B
Location	ClcChr08: 24178370 .. 24183069 (+)
RNA-Seq Expression	Clc08G12970
Synteny	Clc08G12970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATGCTAGAGCGTTGGTCGTCATGTTCAGTATTCACTCTCTCTGGCGCGCGCGGTTTTTCCAGTCCCCGATTTCGTTTGTTCCCGCCGTCGACATTCACATTTCCGTTTTCCGGCGGGTTGCTCACTTCATCTCTCTGTGGCCGCCAGTACTCTTCCAACCTTCTTTGTTGGTAAAGAAATGACTCTTCTCTTTCTTTTCCCGAGATCGAAATTGTCGCCACGATTGTTTTAAATCTCACACTTGACACTGAAACTGGAGTATGCATAATCTAAGGCTAGGTTTTAAAAATGAAGTTCGATGATGCAATTTAGTTAAGATTATTTCAAATCTTTGTTTTGAAGTTACTGCTTCGATTACTATCAGGGTTCGGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTCCTGGTAGGTTTCGTCTTGCCCAACCCTTGGATTCAAAGTGTTCTGTTATCTTTTCTATTTTAATTCACTTGTTATTTCCGCGTTTTACTTATTTTTCATGTTCTTTATCTTGGTATTTCTTAATTGTACTCCCTTATTTGATCTGGTTTTCTCTCTGCAGTCGTACGACGCTTCACTGTATCTTTTGATATTTACTTGCTTGTACTAGTGTCTGGTCACTAAGAGAAGAGATGTGCATGAAAGCCATAGTTTTTTTTTTTTTTCTTCTTCTCTTCTCTTCTCTCTATAAGTTTCCCAGACTGTAAAATCTTGATTGATGCCATCATATGGTACTTGCGACTAAAAGATCGAGCCTGAAGTTATCGCTTCTAGGGGTTTTTTTTTTTTGTTTTTTTTTTTTTGCGACTAATTTGATTTTTCTTGCTCTATTACAGATCATGGGGTAAAAGAAAATGGTACTGGATGCTTCCTTTCACTTCGCCATCCAAAATCAGGTAATTTAAGGGACAAGTTGTCTCCCCACCCCTCCCCTGGTCATAATGATTTGTTAGATCTTCCTTGCCTACATCGTTTTGGACTTTGAATATAAAAAACGAAAAAAATGGAGAAAAAATAATTGTGAAGTTAAAATGCTGTGTTGTATGAACCGTCAATCTCCAAAATGGTCTTCGTCTTTTTCTGTTCGATGGAGCTTGTTTGCAACTGGAGGGAAAATAACAGTTATCGACATACTTTATTTGGTGACTTGATTGTTTAATTGAGACCATCTTTAAGCATAATTTTATTATGGAAAACTGCACGACAGTGCAAGCTTTAGCGAATACTCAGCATATTCTTATAAACCATCCTATTAATTGAGTATATTCGATGTACATTGACAGGAAATACAACATGTTTCTTATATGTAAATGAGATGCTGGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGGTAAACCATCTACTGTCGCCCTGAAATTCTTTTCGTGGATGGCTTATTTCTCAAACTGTATACCTTCTAATCTTCTATTGATTTAAATCTTCCGTAGAATTCACAAATTCAAGAATAACCTATTGAAAATTGGGAACTAAATATTATGTACATGATCGTAGTTGAGTCTTATTTATGCAGTAAAATTATCCTAGAATGATACCGTTGAAATTTTTTTCTTGCCTTCGGTCTCAGGAGAGACATGGTTATTTTGGAGCCAGTTGTGGTCTAAATGCAAGAATGATACTGACAAGAAGCTTTCTGCTGTTTTGTTTACCAAATAGAAACTTCTTCTTCTTCTTCTCCTCTTCTTTCCGTCATTTTTTGAGGATTACCAAATAGGAATTTAATATATATTATTTTGTGTCTACAGATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGGTGGTGTTGCTGTATAAGTCATATGATATCATAATTGTGAGATGGGACATAATTATATGCTGTATACCATTGTTTTGCAGTGTTCAACAATAATGTCAATTCAAGTTTTCCCTTGTTGCTTTTCAATTTATATGTCTCTTTCCTTATCGTTATGGATGATCTGATTCTGTCCATTCAAATTCATTATAATATACTTCAATCTGCTTTGACATTAGTAATCTTCTCTTAATTTAATGCCAATGTTTGAGATTTTTCTTCCAAATTTCTTGAAGAAAGGAGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCGTTTACTGTCTCTCGCAGAGAAGTCTATGCAAGTAGTTTGTGAGGTCAAAGGTGCGCATGTAGTTCATAAAATTAGAAAAATAATTCAAGCATGCCTACAATCTATTCTCATTTCTGCTAACCTTGTCTCCTGCAGAAGTTGGATCATCTAGGTTCTTCAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTTCGTGTTCGTCTTTGCCGCTAGCACTTTCCAAAAGTGTTTTGTTAAGATGAGAAAAAATTAACAATGTATGTCATGATCAGCATGTTCATATAGATTTAGCATCAGTGATTGACAAATCCTATTTTTAAATCAGTTAGTAGGAACTAAAAGGCCGACCCATTCACCCATCTTTCATATTAGTTATTATCCAGTATGTTACTAACACGGGATTATCTAGCAGCCAATTCTTCATGCTGTATGCTATTTGCCAAATTGCCATTCCCTAGCTTTTTTATTTCCATCAAACAATTATTGTTTTCCATAATGTTTTCTATAAGGGATTACTTAGATTCTCTTATTTATTATTTTATTTTATTTTACGCTTTTATTGCTGCAGGTATGCCAGCTGAAAAAAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGATACATGTATAATTCTGAAGAGAGGACAGCTTATAACCCCTCTATGCCATTCTTTTTAATATCTCAGCTGGGTTTCTTTCATTTTCATCTTCATCAGTCTAGTGTCACATTGTAGAACATGTGTTAATATCATCTGGCACATCTGAAGAAATCATATAAAGGGTATCGTCTGTAGTTTTGCATTACACCTCTGGGATTTGATTAGTCAGAAGCTACCATATTCAGACATTAAAAAGAACTTTCGTATTCTGAGACCTCTATGTTGAACTTGATAATCATCATATGAATTAGACCACTTCTAATCGTTGAAACTGTATTTGATTCATGGAAAGTTTTTCTTTGGATGTGCATATTATGGTAATATTTTCTTAGTCGAGTGTAGTGGAATTCGGGAAATTGTTTTGGATTTTAGTTAATTCAATATGGTGTATGATAATACGAGCAGTTGATGTAGTTAAAATGAACATGTAGGAAAGAACAAACTATCTGATAAGGAAAAAGAAACACAGTTAATGGACTGAACGTCTTTTGTGAGGTTGGGTTCCTTTGCATGCCAAAACCAACATCAGGTGGTATAGCACTGTCATTGTATTCATTCAACATGAAAACTTAAGCAAAGGTTTTAGTTAGTACATTTCCTTGGTTGTTAGTATTTGTGTTTGAATGAATTGATAGCTTCTCTTACAACAATCTTTCTTTTGGTACAGTAAGGGATGCAGTTTCAATATTAGGCGAATACTTGAAGGATGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTATTTAGTTCTCAAATCCATTTTAATCGTAGCAATTAAATGTTGTACATTTGACAGTTCCATAAATGGACACATTTTAAGGTGCATGGAAGTAGCTGTATGTGATTGGCCGCGCACTGCTGATTTTGTTTGCAGGTTAAATCTTGCTGAAGCAACCAGGAAAGCATCGGATTCAGAAACGCATCCTACAAACACAGAGAAAAATTTTGATTCCATCTCACAGGTACAATCCCTAATCACTAGCAATTGCATCGATCTTCTATTTCCTTTTCCGTACATGCTACAGACGTAATTATGTTGCCCCTATTATTATTCGTATTTGATGTGTGTGGTCATGTTGAAATATCGAAATCATGTTTTATGACTTTGGGCCACAGATGATTTGATGAGCCTAGGAAGAAGTAGTCTTAGTACATGGAAAACGATTTAGCTTCTATCCTTTTCCTCAACTACTTTTGGGTGGTTGGTGGAAGTTGGCAGGGCACAAATTTTAAAATATTGAAAAATATTTTCTGATTGATCAAAACCACACATATCTTGATGCATGGCGAAATCGTAAAAAGCATTTCCAAAGGATTTTAAAACGTTTTTAGAAGAAACACTTTGGGGTGTTTGGCCCACCAACTTTTTAAGTTGATGTTAAATAACTCAACTTCAATAGTGTTTTATTATTGAAATTTGTACATTCATCGGAGAACTCCATCTTACAACTTTGCACCCCGAACATAGATTCCCTAACTTTAACATATAAATTTCAGGCTTCATAGCTTAACTCAGCTCCCCAATCCCCTTTGAATATTTCACCTCAAATTACTTTAAAGAATTATCTGAAATTCATATAGAAATTGATGACAAAATATGTACATTTCCTTTCCAAATTGGTTGTGCAAATTATGATATGGCAGGATAAGAGTAGGAGCGGCGCAAAGAATACCAGGAACGGAAAGCAAGCTAAGAAGCCAAAGGTGGAGATAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA

mRNA sequence

GTTTATGCTAGAGCGTTGGTCGTCATGTTCAGTATTCACTCTCTCTGGCGCGCGCGGTTTTTCCAGTCCCCGATTTCGTTTGTTCCCGCCGTCGACATTCACATTTCCGTTTTCCGGCGGGTTGCTCACTTCATCTCTCTGTGGCCGCCAGTACTCTTCCAACCTTCTTTGTTGGGTTCGGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTCCTGGTAGATCATGGGGTAAAAGAAAATGGTACTGGATGCTTCCTTTCACTTCGCCATCCAAAATCAGGAAATACAACATGTTTCTTATATGTAAATGAGATGCTGGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGGTGGTGTTGCTGTATAAGTCATATGATATCATAATTAAAGGAGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCGTTTACTGTCTCTCGCAGAGAAGTCTATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTCTTCAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAGCTGAAAAAAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGATACATTAAGGGATGCAGTTTCAATATTAGGCGAATACTTGAAGGATGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATCTTGCTGAAGCAACCAGGAAAGCATCGGATTCAGAAACGCATCCTACAAACACAGAGAAAAATTTTGATTCCATCTCACAGGATAAGAGTAGGAGCGGCGCAAAGAATACCAGGAACGGAAAGCAAGCTAAGAAGCCAAAGGTGGAGATAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA

Coding sequence (CDS)

ATGTTCAGTATTCACTCTCTCTGGCGCGCGCGGTTTTTCCAGTCCCCGATTTCGTTTGTTCCCGCCGTCGACATTCACATTTCCGTTTTCCGGCGGGTTGCTCACTTCATCTCTCTGTGGCCGCCAGTACTCTTCCAACCTTCTTTGTTGGGTTCGGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTCCTGGTAGATCATGGGGTAAAAGAAAATGGTACTGGATGCTTCCTTTCACTTCGCCATCCAAAATCAGGAAATACAACATGTTTCTTATATGTAAATGAGATGCTGGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGGTGGTGTTGCTGTATAAGTCATATGATATCATAATTAAAGGAGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCGTTTACTGTCTCTCGCAGAGAAGTCTATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTCTTCAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAGCTGAAAAAAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGATACATTAAGGGATGCAGTTTCAATATTAGGCGAATACTTGAAGGATGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATCTTGCTGAAGCAACCAGGAAAGCATCGGATTCAGAAACGCATCCTACAAACACAGAGAAAAATTTTGATTCCATCTCACAGGATAAGAGTAGGAGCGGCGCAAAGAATACCAGGAACGGAAAGCAAGCTAAGAAGCCAAAGGTGGAGATAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA

Protein sequence

MFSIHSLWRARFFQSPISFVPAVDIHISVFRRVAHFISLWPPVLFQPSLLGSVVPWLGGKALRKLVFSLLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYLRLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKDTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKSRSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR

Homology

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BLAST of Clc08G12970 vs. NCBI nr
Match: XP_008445067.1 (PREDICTED: ribonuclease H2 subunit B isoform X1 [Cucumis melo])

HSP 1 Score: 523.9 bits (1348), Expect = 1.1e-144
Identity = 271/337 (80.42%), Postives = 280/337 (83.09%), Query Frame = 0


Query: 9   RARFFQSPISFVPAVDIHISVFRRVAHFISLWPPVLFQPSLLGSVVPWLGGKALRKLVFS 68
           RA F  S    VPAVD+HISV RRV H ISLWPP        G  + W  G   +++   
Sbjct: 16  RAVFPGSRFRLVPAVDVHISVIRRVVHCISLWPP--------GCSMAWYEGVEEKRI--- 75

Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKE GTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 76  LIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 135

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 136 RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 195

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 196 HLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 255

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           +TL DAVSILGEYLKD+PWLKLLCDHLKLN AEATRKASDSE  PT+ E  FDSISQDKS
Sbjct: 256 ETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKS 315

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR 346
            S AKNTRNGKQAKKPKVE ESRNIKDMFSKA KRKR
Sbjct: 316 WSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR 329

[Close]

BLAST of Clc08G12970 vs. NCBI nr
Match: XP_016899926.1 (PREDICTED: ribonuclease H2 subunit B isoform X2 [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 5.4e-144
Identity = 270/337 (80.12%), Postives = 279/337 (82.79%), Query Frame = 0


Query: 9   RARFFQSPISFVPAVDIHISVFRRVAHFISLWPPVLFQPSLLGSVVPWLGGKALRKLVFS 68
           RA F  S    VPAVD+HISV RRV H ISLWPP        G  + W  G   +++   
Sbjct: 16  RAVFPGSRFRLVPAVDVHISVIRRVVHCISLWPP--------GCSMAWYEGVEEKRI--- 75

Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKE GTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 76  LIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 135

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARM             KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 136 RLYSATPVDPVFIFLPIFEEARM-------------KGDDPGKFRQLDDIMFINGYPGYL 195

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 196 HLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 255

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           +TL DAVSILGEYLKD+PWLKLLCDHLKLN AEATRKASDSE  PT+ E  FDSISQDKS
Sbjct: 256 ETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKS 315

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR 346
            S AKNTRNGKQAKKPKVE ESRNIKDMFSKA KRKR
Sbjct: 316 WSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR 328

[Close]

BLAST of Clc08G12970 vs. NCBI nr
Match: XP_023546639.1 (ribonuclease H2 subunit B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 2.7e-135
Identity = 245/276 (88.77%), Postives = 252/276 (91.30%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKENGTGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 13  LIAPDHGVKENGTGCLLSLRHPKSGNTTCFLYVNELLEEIHWFKQSYSSWFLGDYVTEDG 72

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 73  RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 132

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 133 HLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 192

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           DTL DAVSILGEYLKDEPWLKLLCDHLKLN AEATRKASD+E  P + E NFDSISQDK+
Sbjct: 193 DTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEATRKASDAEKPPLSIENNFDSISQDKT 252

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           RSGAKNTRNGKQAKKPKVE ESRNIKDMFSKAIKRK
Sbjct: 253 RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK 276

[Close]

BLAST of Clc08G12970 vs. NCBI nr
Match: KAG7029739.1 (Ribonuclease H2 subunit B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 492.3 bits (1266), Expect = 3.5e-135
Identity = 244/276 (88.41%), Postives = 252/276 (91.30%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKENGTGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 13  LIAPDHGVKENGTGCLLSLRHPKSGNTTCFLYVNELLEEIHWFKQSYSSWFLGDYVTEDG 72

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 73  RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 132

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLS+AEKSMQVVCEVKE+GSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 133 HLLSVAEKSMQVVCEVKEIGSSKFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 192

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           DTL DAVSILGEYLKDEPWLKLLCDHLKLN AEATRKASD+E  P + E NFDSISQDK+
Sbjct: 193 DTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEATRKASDAEKPPLSIENNFDSISQDKT 252

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           RSGAKNTRNGKQAKKPKVE ESRNIKDMFSKAIKRK
Sbjct: 253 RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK 276

[Close]

BLAST of Clc08G12970 vs. NCBI nr
Match: KAG6598802.1 (Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492.3 bits (1266), Expect = 3.5e-135
Identity = 244/276 (88.41%), Postives = 252/276 (91.30%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKENGTGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 34  LIAPDHGVKENGTGCLLSLRHPKSGNTTCFLYVNELLEEIHWFKQSYSSWFLGDYVTEDG 93

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 94  RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 153

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLS+AEKSMQVVCEVKE+GSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 154 HLLSVAEKSMQVVCEVKEIGSSKFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 213

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           DTL DAVSILGEYLKDEPWLKLLCDHLKLN AEATRKASD+E  P + E NFDSISQDK+
Sbjct: 214 DTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEATRKASDAEKPPLSIENNFDSISQDKT 273

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           RSGAKNTRNGKQAKKPKVE ESRNIKDMFSKAIKRK
Sbjct: 274 RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK 297

[Close]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot
Match: Q3ZBI3 (Ribonuclease H2 subunit B OS=Bos taurus OX=9913 GN=RNASEH2B PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 6.8e-17
Identity = 67/223 (30.04%), Postives = 101/223 (45.29%), Query Frame = 0


Query: 71  LVDHGVKENGTGCFLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDG 130
           L D   K      F+ L +P SG  T +L+      L EI  FK+   SWF+ + V   G
Sbjct: 24  LKDDSKKMKSGLVFVKLANPCSGEGTIYLFNMCLPQLFEIKVFKEKNHSWFINESVQSGG 83

Query: 131 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 190
            L+ ATPVDP+F+ L    +A               K    GKF+ LD ++  + +P  +
Sbjct: 84  LLHFATPVDPLFLLLHYLIKAD--------------KESFQGKFQPLDQVVMDDMFPDCI 143

Query: 191 RLLSL--AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAARE 250
            LL L   EK +Q V E KEV   ++++    K L WL  KV Q    L T   N +AR 
Sbjct: 144 LLLKLPELEKLLQHVTEEKEVDKKKYYKYSKEKTLKWLGKKVNQTMAALKTNKVNVSARV 203

Query: 251 EKDTLRDAVSILGEYLKDEPWLK----LLCDHLKLNLAEATRK 286
           +         +  +  KDE +++    L+ D++   L++   K
Sbjct: 204 QSTAFFSGGQVSSD--KDEDYVRYAHGLISDYIPKQLSDDLSK 230

[Close]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot
Match: Q5HZP1 (Ribonuclease H2 subunit B OS=Xenopus laevis OX=8355 GN=rnaseh2b PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-16
Identity = 83/288 (28.82%), Postives = 128/288 (44.44%), Query Frame = 0


Query: 84  FLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFI 143
           F+ LR P +     FL++N  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+
Sbjct: 37  FVKLRAPFADKGAMFLFINSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPLFL 96

Query: 144 FLPIFEEARMKVVLLYKSYDIIIKGD-DPGKFRQLDDIMFINGYP--GYLRLLSLAEKSM 203
            LP                  +IK D + GKF+ ++ I+    +P  G L   +   KS+
Sbjct: 97  VLP-----------------YLIKADKEQGKFQPVEQIVVDEEFPSCGMLLQCTPVAKSL 156

Query: 204 QVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL-----CTLDKNYAAR-------- 263
             V E KE+GS +F +    K L WL  KV Q  K L     C      +A         
Sbjct: 157 HHVTEEKEIGSKKFHKYSKEKALVWLKKKVDQTVKVLKSSKVCVGGGVQSATFIRSTQGS 216

Query: 264 --EEKDTLRDAVSILGEYLKDEPWLKLLCDHLKL-NLAEAT-------RKASDSETHPTN 323
             +E+D  R A  ++ EYL  E   + L  +L L +L+  T       R+ SD+   P  
Sbjct: 217 DVKEEDYTRYAHGLISEYL-TEDLREDLSKYLGLPDLSSPTPEPPVKKRRVSDA---PVE 276

Query: 324 TEKNFDSISQDKSRSGAKNTRNGKQAKKPKVEIES-RNIKDMFSKAIK 343
            ++++   + D     + +     Q    KV+    +NI   FS   K
Sbjct: 277 ADEDYTKYNSDNKSRKSNSKMTAAQKSLAKVDKSGMKNISAFFSPKAK 303

[Close]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot
Match: Q5XI96 (Ribonuclease H2 subunit B OS=Rattus norvegicus OX=10116 GN=Rnaseh2b PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-16
Identity = 81/289 (28.03%), Postives = 120/289 (41.52%), Query Frame = 0


Query: 58  GGKALRKLVFSL--LLVDHGVKENGTGCFLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQ 117
           G  A R+LVF L   L D   K      F+ L +P SG    +L     + L EI  FK+
Sbjct: 8   GDLAARQLVFLLPEYLKDASRKSKSGLLFVKLVNPHSGEGATYLIDACLQKLFEIKVFKE 67

Query: 118 SYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFR 177
            + SWF+   V   G L+ ATP+DP+F+ L                   +IK    GK++
Sbjct: 68  KHHSWFINQSVQSGGLLHFATPMDPLFLLL-----------------HYLIKAGKEGKYQ 127

Query: 178 QLDDIMFINGYPGYLRLLSL--AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQL 237
            LD ++  + +P    LL     EKS++ V E KEV S ++++    K L WL  KV Q 
Sbjct: 128 PLDQVVVDDKFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSTEKTLKWLEKKVNQT 187

Query: 238 KKTLCTLDKNYAAR---------------EEKDTLRDAVSILGEYLKDEPWLKLLCDHLK 297
              L     N  AR               +E+D +R A  ++ +Y+  E     L D L 
Sbjct: 188 VAALKANHVNVGARVQSSAYFSGVQVSRDKEEDYVRYAHGLISDYIPKE-----LSDDLS 247

Query: 298 --LNLAEATRKASDSETHPTNTEKNFDSISQDKSRSGAKNTRNGKQAKK 324
             L L E      +                +D ++   K+ +NGK+  K
Sbjct: 248 KLLKLPEPPASLPNPPAKKLKLADEPVEAKEDYTKFNTKDLKNGKKNSK 274

[Close]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot
Match: Q28GD9 (Ribonuclease H2 subunit B OS=Xenopus tropicalis OX=8364 GN=rnaseh2b PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-15
Identity = 81/288 (28.12%), Postives = 126/288 (43.75%), Query Frame = 0


Query: 84  FLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFI 143
           F  LR P +   + FL+++  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+
Sbjct: 37  FAKLRAPCTDKGSMFLFIDSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPMFL 96

Query: 144 FLPIFEEARMKVVLLYKSYDIIIKGD-DPGKFRQLDDIMFINGYPGYLRLLSL--AEKSM 203
            L                   +IK D + GKF+ ++ I+    +P    LL      KS+
Sbjct: 97  VL-----------------HYLIKADKEQGKFQPVEQIVVDEEFPSCSMLLQCTPVSKSL 156

Query: 204 QVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL-------------CTLDKNYAAR 263
             V E KE+GS +F++    K L WL  KV    K L              T  +N    
Sbjct: 157 HHVTEEKEIGSKKFYKYSKEKTLVWLKKKVELTVKVLKSSNICVGGGVQSATFIRNTQGS 216

Query: 264 E--EKDTLRDAVSILGEYLKDEPWLKLLCDHLKL-NLAEAT-------RKASDSETHPTN 323
           +  E+D  R A  ++ EYL  E   + L  +L L +L+  T       RK S++   P  
Sbjct: 217 DVKEEDYTRYAHGLISEYL-TEDLREDLSKYLGLPDLSSPTPEPPVKKRKVSEA---PVE 276

Query: 324 TEKNFDSISQDKSRSGAKNTRNGKQAKKPKVEIES-RNIKDMFSKAIK 343
            E+++   + D     + +     Q    KV+    +NI   FS   K
Sbjct: 277 AEEDYTKFNSDSKNKKSNSKMTAAQKSLAKVDKSGMKNISAFFSPKAK 303

[Close]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot
Match: Q80ZV0 (Ribonuclease H2 subunit B OS=Mus musculus OX=10090 GN=Rnaseh2b PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 84/318 (26.42%), Postives = 134/318 (42.14%), Query Frame = 0


Query: 58  GGKALRKLVFSLLLVDH-----GVKENGTGCFLSLRHPKSGNTTCFL--YVNEMLEEIHW 117
           G  A R+LVF  LL +H       K+  +  F+ L +P SG    +L     + L EI  
Sbjct: 8   GDLAARQLVF--LLPEHLKDASKKKKKSSLLFVKLANPHSGEGATYLIDMCLQQLFEIKV 67

Query: 118 FKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPG 177
           FK+ + SWF+   V   G L+ ATP+DP+F+ L                   ++K    G
Sbjct: 68  FKEKHHSWFINQSVQSGGLLHFATPMDPLFLLL-----------------HYLLKAGKEG 127

Query: 178 KFRQLDDIMFINGYPGYLRLLSL--AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV 237
           K++ LD ++  + +P    LL     EKS++ V E KEV S ++++    K L WL  KV
Sbjct: 128 KYQPLDQVVVDDTFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSSEKTLKWLEKKV 187

Query: 238 CQLKKTLCTLDKNYAAR---------------EEKDTLRDAVSILGEYLKDE------PW 297
            Q    L   + N  AR               +E+D +R A  ++ +Y+  E       +
Sbjct: 188 NQTVVALKANNVNVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKF 247

Query: 298 LKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKSRSGAKNTR-NGKQAKKPKV 345
           LKL       +L     K       P   ++++   +    ++G KN++    Q    KV
Sbjct: 248 LKL--PEPPASLTNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 304

[Close]

BLAST of Clc08G12970 vs. ExPASy TrEMBL
Match: A0A1S3BBT5 (Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 5.2e-145
Identity = 271/337 (80.42%), Postives = 280/337 (83.09%), Query Frame = 0


Query: 9   RARFFQSPISFVPAVDIHISVFRRVAHFISLWPPVLFQPSLLGSVVPWLGGKALRKLVFS 68
           RA F  S    VPAVD+HISV RRV H ISLWPP        G  + W  G   +++   
Sbjct: 16  RAVFPGSRFRLVPAVDVHISVIRRVVHCISLWPP--------GCSMAWYEGVEEKRI--- 75

Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKE GTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 76  LIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 135

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 136 RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 195

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 196 HLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 255

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           +TL DAVSILGEYLKD+PWLKLLCDHLKLN AEATRKASDSE  PT+ E  FDSISQDKS
Sbjct: 256 ETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKS 315

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR 346
            S AKNTRNGKQAKKPKVE ESRNIKDMFSKA KRKR
Sbjct: 316 WSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR 329

[Close]

BLAST of Clc08G12970 vs. ExPASy TrEMBL
Match: A0A1S4DVB3 (Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.6e-144
Identity = 270/337 (80.12%), Postives = 279/337 (82.79%), Query Frame = 0


Query: 9   RARFFQSPISFVPAVDIHISVFRRVAHFISLWPPVLFQPSLLGSVVPWLGGKALRKLVFS 68
           RA F  S    VPAVD+HISV RRV H ISLWPP        G  + W  G   +++   
Sbjct: 16  RAVFPGSRFRLVPAVDVHISVIRRVVHCISLWPP--------GCSMAWYEGVEEKRI--- 75

Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKE GTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 76  LIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 135

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARM             KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 136 RLYSATPVDPVFIFLPIFEEARM-------------KGDDPGKFRQLDDIMFINGYPGYL 195

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 196 HLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 255

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           +TL DAVSILGEYLKD+PWLKLLCDHLKLN AEATRKASDSE  PT+ E  FDSISQDKS
Sbjct: 256 ETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKS 315

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR 346
            S AKNTRNGKQAKKPKVE ESRNIKDMFSKA KRKR
Sbjct: 316 WSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR 328

[Close]

BLAST of Clc08G12970 vs. ExPASy TrEMBL
Match: A0A6J1HFF3 (Ribonuclease H2 subunit B OS=Cucurbita moschata OX=3662 GN=LOC111462943 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 1.1e-134
Identity = 244/276 (88.41%), Postives = 251/276 (90.94%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKENGTGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 13  LIAPDHGVKENGTGCLLSLRHPKSGNTTCFLYVNELLEEIHWFKQSYSSWFLGDYVTEDG 72

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYP YL
Sbjct: 73  RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPEYL 132

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 133 HLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 192

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           DTL DAVSILGEYLKDEPWLKLLCDHLKLN AEATRKASD+E  P + E NFDSISQDK+
Sbjct: 193 DTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEATRKASDAEKPPLSIENNFDSISQDKT 252

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           RSGAKNTRNGKQAKKPKVE ESRNIKDMFSKAIKRK
Sbjct: 253 RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK 276

[Close]

BLAST of Clc08G12970 vs. ExPASy TrEMBL
Match: A0A1S3BCJ9 (Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 1.2e-133
Identity = 245/277 (88.45%), Postives = 249/277 (89.89%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKE GTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 13  LIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 72

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATPVDPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 73  RLYSATPVDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 132

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 133 HLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 192

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           +TL DAVSILGEYLKD+PWLKLLCDHLKLN AEATRKASDSE  PT+ E  FDSISQDKS
Sbjct: 193 ETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKS 252

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRKR 346
            S AKNTRNGKQAKKPKVE ESRNIKDMFSKA KRKR
Sbjct: 253 WSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR 277

[Close]

BLAST of Clc08G12970 vs. ExPASy TrEMBL
Match: A0A6J1K9Q1 (Ribonuclease H2 subunit B OS=Cucurbita maxima OX=3661 GN=LOC111491930 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 3.5e-133
Identity = 241/276 (87.32%), Postives = 249/276 (90.22%), Query Frame = 0


Query: 69  LLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDG 128
           L+  DHGVKENGTGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDG
Sbjct: 13  LIAPDHGVKENGTGCLLSLRHPKSGNTTCFLYVNELLEEIHWFKQSYSSWFLGDYVTEDG 72

Query: 129 RLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDPGKFRQLDDIMFINGYPGYL 188
           RLYSATP+DPVFIFLPIFEEARMK            KGDDPGKFRQLDDIMFINGYPGYL
Sbjct: 73  RLYSATPIDPVFIFLPIFEEARMK------------KGDDPGKFRQLDDIMFINGYPGYL 132

Query: 189 RLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 248
            LLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK
Sbjct: 133 HLLSVAEKSMQVVCEVKEVGSSKFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK 192

Query: 249 DTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDSETHPTNTEKNFDSISQDKS 308
           DTL DAVSILGEYLKDEPWLKLLCDHLKLN AEATR+ASD+E  P   E NFDSISQDK+
Sbjct: 193 DTLSDAVSILGEYLKDEPWLKLLCDHLKLNFAEATRQASDAEKPPLRIENNFDSISQDKT 252

Query: 309 RSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           RSGAKNTRNGKQAK  KVE ESRNIKDMFSKAIKRK
Sbjct: 253 RSGAKNTRNGKQAKNLKVETESRNIKDMFSKAIKRK 276

[Close]

BLAST of Clc08G12970 vs. TAIR 10
Match: AT4G20325.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 315.1 bits (806), Expect = 7.1e-86
Identity = 165/295 (55.93%), Postives = 206/295 (69.83%), Query Frame = 0


Query: 50  LGSVVPWLGGKALRKLVFSLLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIH 109
           + S V W G +  R L+      D G   N  G  L+LRHPKS N TCFL+ NEML+E+ 
Sbjct: 1   MSSTVWWEGAEKTRVLI----APDSGCGGNKPGELLTLRHPKSENGTCFLFNNEMLQELQ 60

Query: 110 WFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDP 169
           WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMK            KG++ 
Sbjct: 61  WFKQSYGSWFLGDYISEDGSLYMATPVDPVFILLPIFDEARMK------------KGENS 120

Query: 170 GKFRQLDDIMFINGYPGYLRLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVC 229
           GKFRQLD+I+F+ GYPGY  LLSLAEK M++VC+ +EVGS +F+RLD+SKVLAWL  K+ 
Sbjct: 121 GKFRQLDEILFVEGYPGYQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLAWLSCKIY 180

Query: 230 QLKKTLCTLDKNYAAREEKDTLRDAVSILGEYLKDEPWLKLLCDHLKLNLAEATRKASDS 289
            LK +L  LDKNYAA++EK TL D+VSI+GEYLK EPWLKLL DHL L   + T K ++ 
Sbjct: 181 CLKNSLPELDKNYAAQDEKQTLVDSVSIVGEYLKTEPWLKLLYDHLGLKFVDPTMKETNM 240

Query: 290 ETHPTNTEKNFDSISQDKSRSGAKNTRNGKQAKKPKVEIESRNIKDMFSKAIKRK 345
           E  PT  E N  S +  + ++   N + GKQ K+ KVE  S+NI+DMFS+A K+K
Sbjct: 241 ENLPTANENNMASSNSIQEKA---NKKPGKQTKQAKVETGSKNIRDMFSRACKKK 276

[Close]

BLAST of Clc08G12970 vs. TAIR 10
Match: AT4G20325.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 215.3 bits (547), Expect = 7.6e-56
Identity = 104/175 (59.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 50  LGSVVPWLGGKALRKLVFSLLLVDHGVKENGTGCFLSLRHPKSGNTTCFLYVNEMLEEIH 109
           + S V W G +  R L+      D G   N  G  L+LRHPKS N TCFL+ NEML+E+ 
Sbjct: 1   MSSTVWWEGAEKTRVLI----APDSGCGGNKPGELLTLRHPKSENGTCFLFNNEMLQELQ 60

Query: 110 WFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKVVLLYKSYDIIIKGDDP 169
           WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMK            KG++ 
Sbjct: 61  WFKQSYGSWFLGDYISEDGSLYMATPVDPVFILLPIFDEARMK------------KGENS 120

Query: 170 GKFRQLDDIMFINGYPGYLRLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWL 225
           GKFRQLD+I+F+ GYPGY  LLSLAEK M++VC+ +EVGS +F+RLD+SKVLAWL
Sbjct: 121 GKFRQLDEILFVEGYPGYQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLAWL 159

The following BLAST results are available for this feature:

BLAST of Clc08G12970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445067.1	1.1e-144	80.42	PREDICTED: ribonuclease H2 subunit B isoform X1 [Cucumis melo]	[more]
XP_016899926.1	5.4e-144	80.12	PREDICTED: ribonuclease H2 subunit B isoform X2 [Cucumis melo]	[more]
XP_023546639.1	2.7e-135	88.77	ribonuclease H2 subunit B [Cucurbita pepo subsp. pepo]	[more]
KAG7029739.1	3.5e-135	88.41	Ribonuclease H2 subunit B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598802.1	3.5e-135	88.41	Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc08G12970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBI3	6.8e-17	30.04	Ribonuclease H2 subunit B OS=Bos taurus OX=9913 GN=RNASEH2B PE=2 SV=2	[more]
Q5HZP1	2.6e-16	28.82	Ribonuclease H2 subunit B OS=Xenopus laevis OX=8355 GN=rnaseh2b PE=2 SV=1	[more]
Q5XI96	4.4e-16	28.03	Ribonuclease H2 subunit B OS=Rattus norvegicus OX=10116 GN=Rnaseh2b PE=2 SV=1	[more]
Q28GD9	1.7e-15	28.13	Ribonuclease H2 subunit B OS=Xenopus tropicalis OX=8364 GN=rnaseh2b PE=2 SV=1	[more]
Q80ZV0	2.2e-15	26.42	Ribonuclease H2 subunit B OS=Mus musculus OX=10090 GN=Rnaseh2b PE=1 SV=2	[more]

BLAST of Clc08G12970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBT5	5.2e-145	80.42	Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1	[more]
A0A1S4DVB3	2.6e-144	80.12	Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1	[more]
A0A6J1HFF3	1.1e-134	88.41	Ribonuclease H2 subunit B OS=Cucurbita moschata OX=3662 GN=LOC111462943 PE=4 SV=...	[more]
A0A1S3BCJ9	1.2e-133	88.45	Ribonuclease H2 subunit B OS=Cucumis melo OX=3656 GN=LOC103488218 PE=4 SV=1	[more]
A0A6J1K9Q1	3.5e-133	87.32	Ribonuclease H2 subunit B OS=Cucurbita maxima OX=3661 GN=LOC111491930 PE=4 SV=1	[more]

BLAST of Clc08G12970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20325.1	7.1e-86	55.93	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G20325.2	7.6e-56	59.43	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.20.120		coord: 136..276 e-value: 1.4E-26 score: 95.2
None	No IPR available	GENE3D	2.20.25.530		coord: 65..135 e-value: 4.6E-16 score: 60.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..317
IPR019024	Ribonuclease H2 subunit B, wHTH domain	PFAM	PF09468	RNase_H2-Ydr279	coord: 140..240 e-value: 1.7E-8 score: 34.9
IPR041195	Rnh202, triple barrel domain	PFAM	PF17745	Ydr279_N	coord: 84..137 e-value: 3.2E-7 score: 30.5
IPR040456	Ribonuclease H2 subunit B	PANTHER	PTHR13383	RIBONUCLEASE H2 SUBUNIT B	coord: 77..343
IPR040456	Ribonuclease H2 subunit B	CDD	cd09270	RNase_H2-B	coord: 76..253 e-value: 3.9701E-39 score: 135.895

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G12970.2	Clc08G12970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0032299	ribonuclease H2 complex
molecular_function	GO:0009982	pseudouridine synthase activity