Clc08G12420 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G12420
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPolynucleotide adenylyltransferase
LocationClcChr08: 23682197 .. 23684087 (+)
RNA-Seq ExpressionClc08G12420
SyntenyClc08G12420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCTGATAGAAATGGCAAGGATATTCCAAGTTTGACCAGGGAGAATGGTTCTACGGGGGATTCAGGTAGAGCTACTTACTAAAGAAATGGAAGGATCTTCCTCAAGGAAGGAGGTGCCTGATCTAGGCAGTCTTTCAAATCAGAGGAAGCTTTACAAATTGGAATGAACGGGGAAAAAAGTTGAGGGCTTAGCATCAAGTATGAATGGAAGTGCACAGACAGTAGCCATCAGGACTTTTCTCCATTGGACAAAGGATGTAGTGAGATTGATTCCAAGGCAACAAATACATTTGGTCAAACAACAGGGGGGGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATACACATAACCTTAGTTGCAAGGTGAGTGACTGAGTTTGACTACGTTTGGATTACAAATCATAGCCAATGGCAGTAAGAGAAGTGGCATTCTAGGGATAGTGAGTCGGTATTTGCAGGGCAAAGATAGCAGGACGGATCCAGATTTGGCATTGGAAAATGGTTCTGTTGTGACTGGAAGTGTGTCTCAAAATGGTCAATCTAAAGCGTTGGATGGTTTGAATCTAATTGTTAAATTACTTTTATTTTATATATTTACACGACACCTGTTATAACTGATTATGGTGCTTCCACCAAGGGAATCTTAGGATGAGAGGAGGTTTAGATTTTAATTGATATCAATCAGAAGAATAGAAGATATAAACAGATTTCTTGTTTGATACCTTAAATATAAGTACATATTTATTTTACAAAAGAAGCAACTTTTGTTGTTTTGTTCCATTTCTTTTCGCCATGCATCTTTCCTTCTCTCTTTCCGAACCATAATTATTGTTCTATTTTGCTGTTGCATTTTATCATCATTTTGTAATGCCAAGTTTCGGCACAGGCAAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCACCACTATACGTGTTATGTTACCAGTAACTGTGCTAAAGAACCCATTTCTGCTCAAGTTTTTCCTGCATTACCTTTTTCTCATGAAACTCTTTGCCTAATTAGTAATTTTCTTTTTGACTTTATTTTATAGCTGAAGGACCAGCGATCAGGCAGTCTCCAGAATGGAGTTAAATCAGAATCTAGCAAATTCTGGTAAAAAAAGAGTCTTGAGGATCTGGCTAGAAGGCATGTGTATTTAGACTCGATGCAATTTCTATTAGATAAAGAAATTATTTTACTGAATCTGGCGAAGGGCCTGTGCTTTTTCCGTTCATTAGTACTTAAGTTGCCTGATTTTTATGTTTATTTTGATCATCTTCTCTTTATGTTGCTTGTTTGGCTCTTTAGCATCCTTTGAACAGTCTGAATCTGAACCTCAAACGCATGACATGTGGAGGGTAAGTACTGGATGCCGGATGGGTTGGGAGGTCAGGAGCTAACCAGGATTCGGTAAGTATCACCTCAATTACTGGCTTTGATTATTGATGTAGATGGTGTTCATCACGTATGAACCTGCGGACTTGGGGAGGAGTCACGTGGCTTGGTGGCGTGGCAGATGGTTGAGCTCCAATAGGCTGTTTACAGTCCTTGAACATGGAATCCGAAGGAGGTGCTGTTGGGGAAAAAAACCTTAAATAAGTGCATGCGAGCTTTGAAAATCTGGTGCATTTCATGTTAGATGCCTGGTGATGGAACTGTCACAGCTTCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCGCATGGGGTCGCTTCTGGGGCAAATCTAGAATACACTTCTGAGACCTTCAATCTTACAGTTTAACCATATCTGAGACCTTCAATCTTACAGTTTAACCATATTGAGTTTGACGTGCACATTGTACGGAGAAAGTTCTTATGTTTTCTTCCATTTTTTTTCTTCCCGGG

mRNA sequence

ATGGGATCTGATAGAAATGGCAAGGATATTCCAAGTTTGACCAGGGAGAATGGTTCTACGGGGGATTCAGTAGCCATCAGGACTTTTCTCCATTGGACAAAGGATGTAGTGAGATTGATTCCAAGGCAACAAATACATTTGGTCAAACAACAGGGGGGGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATACACATAACCTTAGTTGCAAGGACGGATCCAGATTTGGCATTGGAAAATGGTTCTGTTGTGACTGGAAGTGTGTCTCAAAATGGTCAATCTAAAGCGTTGGATGGCAAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCACCACTATACGTGTTATGTTACCAGTAACTGTGCTAAAGAACCCATTTCTGCTCAAGACCAGCGATCAGGCAGTCTCCAGAATGGAGTTAAATCAGAATCTAGCAAATTCTGCATCCTTTGAACAGTCTGAATCTGAACCTCAAACGCATGACATGTGGAGGATGGTGTTCATCACGTATGAACCTGCGGACTTGGGGAGGAGTCACGTGGCTTGGTGGCGTGGCAGATGGTTGAGCTCCAATAGGCTGTTTACAGTCCTTGAACATGGAATCCGAAGGAGATGCCTGGTGATGGAACTGTCACAGCTTCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCGCATGGGGTCGCTTCTGGGGCAAATCTAGAATACACTTCTGAGACCTTCAATCTTACAGTTTAACCATATCTGAGACCTTCAATCTTACAGTTTAACCATATTGAGTTTGACGTGCACATTGTACGGAGAAAGTTCTTATGTTTTCTTCCATTTTTTTTCTTCCCGGG

Coding sequence (CDS)

ATGGGATCTGATAGAAATGGCAAGGATATTCCAAGTTTGACCAGGGAGAATGGTTCTACGGGGGATTCAGTAGCCATCAGGACTTTTCTCCATTGGACAAAGGATGTAGTGAGATTGATTCCAAGGCAACAAATACATTTGGTCAAACAACAGGGGGGGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATACACATAACCTTAGTTGCAAGGACGGATCCAGATTTGGCATTGGAAAATGGTTCTGTTGTGACTGGAAGTGTGTCTCAAAATGGTCAATCTAAAGCGTTGGATGGCAAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCACCACTATACGTGTTATGTTACCAGTAACTGTGCTAAAGAACCCATTTCTGCTCAAGACCAGCGATCAGGCAGTCTCCAGAATGGAGTTAAATCAGAATCTAGCAAATTCTGCATCCTTTGAACAGTCTGAATCTGAACCTCAAACGCATGACATGTGGAGGATGGTGTTCATCACGTATGAACCTGCGGACTTGGGGAGGAGTCACGTGGCTTGGTGGCGTGGCAGATGGTTGAGCTCCAATAGGCTGTTTACAGTCCTTGAACATGGAATCCGAAGGAGATGCCTGGTGATGGAACTGTCACAGCTTCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCGCATGGGGTCGCTTCTGGGGCAAATCTAG

Protein sequence

MGSDRNGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAIHITLVARTDPDLALENGSVVTGSVSQNGQSKALDGKSSDWCTCGGRSCTTIRVMLPVTVLKNPFLLKTSDQAVSRMELNQNLANSASFEQSESEPQTHDMWRMVFITYEPADLGRSHVAWWRGRWLSSNRLFTVLEHGIRRRCLVMELSQLPFLEDGRFFVKELRMGSLLGQI
Homology
[Close]
BLAST of Clc08G12420 vs. NCBI nr
Match: KAG7029706.1 (Nuclear poly(A) polymerase 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-16
Identity = 71/215 (33.02%), Postives = 91/215 (42.33%), Query Frame = 0 

Query: 4   DRNGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTF--N 63
           + N + I  L      +  +VAIR FLHWTKDVVR+         +  G    ++ F  N
Sbjct: 648 EMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANTFGQTTGEESTQVDFQPN 707

Query: 64  QIAIHITLV---ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSDWCTCGGRSCTTIRV 123
             A +++     +RTDP+LALENGSVVTG V QNGQSK L+                   
Sbjct: 708 CNAHNLSCKGNDSRTDPELALENGSVVTGRVFQNGQSKELE------------------- 767

Query: 124 MLPVTVLKNPFLLKTSDQAVSRMELNQNLANSASFEQSESEPQTHDMWRMVFITYEPADL 183
                                                            MVFI +EPAD+
Sbjct: 768 -------------------------------------------------MVFIMHEPADM 794

Query: 184 GRSHVAWWRGRWLSSNRLFTVLEHGIRRRCLVMEL 214
           GR  VAWWRG   SSN LF VLEHG   +  +++L
Sbjct: 828 GRGRVAWWRGIQFSSNMLFVVLEHGNPEKQALLDL 794

[Close]
BLAST of Clc08G12420 vs. NCBI nr
Match: XP_038884464.1 (nuclear poly(A) polymerase 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 9.8e-12
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+ +  L         +VAI+TFLHWTKDV R+  +      +  GG   ++ F     
Sbjct: 681 NGEKVKGLASSMSGNAQTVAIKTFLHWTKDVGRIDSKSANTFGQTTGGESTQVDFQPNCN 740

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
              L      +RTDPDLALENGSVVTG VSQNGQSK L+ K SD
Sbjct: 741 THNLSCKGNDSRTDPDLALENGSVVTGRVSQNGQSKELEPKISD 784

[Close]
BLAST of Clc08G12420 vs. NCBI nr
Match: XP_038884467.1 (nuclear poly(A) polymerase 4-like isoform X3 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 9.8e-12
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+ +  L         +VAI+TFLHWTKDV R+  +      +  GG   ++ F     
Sbjct: 651 NGEKVKGLASSMSGNAQTVAIKTFLHWTKDVGRIDSKSANTFGQTTGGESTQVDFQPNCN 710

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
              L      +RTDPDLALENGSVVTG VSQNGQSK L+ K SD
Sbjct: 711 THNLSCKGNDSRTDPDLALENGSVVTGRVSQNGQSKELEPKISD 754

[Close]
BLAST of Clc08G12420 vs. NCBI nr
Match: XP_038884466.1 (nuclear poly(A) polymerase 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+ +  L         +VAI+TFLHWTKDV R+  +      +  GG   ++ F     
Sbjct: 681 NGEKVKGLASSMSGNAQTVAIKTFLHWTKDVGRIDSKSANTFGQTTGGESTQVDFQPNCN 740

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALD 100
              L      +RTDPDLALENGSVVTG VSQNGQSK L+
Sbjct: 741 THNLSCKGNDSRTDPDLALENGSVVTGRVSQNGQSKELE 779

[Close]
BLAST of Clc08G12420 vs. NCBI nr
Match: XP_008444994.1 (PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo] >XP_008444995.1 PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+++  L      +  +VAIRT L WTKDVVR+  +      +  GG   ++ F     
Sbjct: 675 NGENVEGLAPSMNGSAQTVAIRTLLDWTKDVVRIDSKSGNTFGEMTGGESTQVDFQPNCN 734

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
              L      +RTDPDLAL+NGSVVTG VSQNGQSK L+ K S+
Sbjct: 735 THNLSCKGNDSRTDPDLALDNGSVVTGRVSQNGQSKVLEPKISN 778

[Close]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match: A0A1S3BCI7 (Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+++  L      +  +VAIRT L WTKDVVR+  +      +  GG   ++ F     
Sbjct: 675 NGENVEGLAPSMNGSAQTVAIRTLLDWTKDVVRIDSKSGNTFGEMTGGESTQVDFQPNCN 734

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
              L      +RTDPDLAL+NGSVVTG VSQNGQSK L+ K S+
Sbjct: 735 THNLSCKGNDSRTDPDLALDNGSVVTGRVSQNGQSKVLEPKISN 778

[Close]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match: A0A1S3BBN8 (Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+++  L      +  +VAIRT L WTKDVVR+  +      +  GG   ++ F     
Sbjct: 647 NGENVEGLAPSMNGSAQTVAIRTLLDWTKDVVRIDSKSGNTFGEMTGGESTQVDFQPNCN 706

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
              L      +RTDPDLAL+NGSVVTG VSQNGQSK L+ K S+
Sbjct: 707 THNLSCKGNDSRTDPDLALDNGSVVTGRVSQNGQSKVLEPKISN 750

[Close]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match: A0A1S3BBN2 (Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 0 

Query: 6   NGKDIPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTFNQIAI 65
           NG+++  L      +  +VAIRT L WTKDVVR+  +      +  GG   ++ F     
Sbjct: 675 NGENVEGLAPSMNGSAQTVAIRTLLDWTKDVVRIDSKSGNTFGEMTGGESTQVDFQPNCN 734

Query: 66  HITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALD 100
              L      +RTDPDLAL+NGSVVTG VSQNGQSK L+
Sbjct: 735 THNLSCKGNDSRTDPDLALDNGSVVTGRVSQNGQSKVLE 773

[Close]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match: A0A0A0LP30 (Polynucleotide adenylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G373380 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 0 

Query: 1   MGSDRNGKD--IPSLTRENGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKL 60
           +G+DR   D   P++   NGS   +V+IRT LHWTKDVVR+         +  GG   ++
Sbjct: 648 IGTDRENVDGLAPNM---NGSV-QTVSIRTLLHWTKDVVRIDSESGNTYGEMTGGESTQV 707

Query: 61  TFNQIAIHITLV-----ARTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
            F        L      +RTDPDLAL+NGSVVTG VSQNGQSK L+ K S+
Sbjct: 708 EFQPNCNTHNLSCKGNDSRTDPDLALDNGSVVTGRVSQNGQSKVLEPKISN 754

[Close]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match: A0A6J1KC70 (Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 17  NGSTGDSVAIRTFLHWTKDVVRLIPRQQIHLVKQQGGRVPKLTF--NQIAIHITLV---A 76
           +G +  +VAIR FLHWTKDVVR+         +  G    ++ F  N  A +++     +
Sbjct: 663 SGGSAQTVAIRNFLHWTKDVVRIDSESANTFGQTTGEDSTQVDFQPNCNAHNLSCKGNDS 722

Query: 77  RTDPDLALENGSVVTGSVSQNGQSKALDGKSSD 105
           RTDP+LALENGSVVTG V QNGQSK L+ K SD
Sbjct: 723 RTDPELALENGSVVTGRVFQNGQSKELEPKFSD 755

The following BLAST results are available for this feature:
BLAST of Clc08G12420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029706.16.5e-1633.02Nuclear poly(A) polymerase 4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038884464.19.8e-1246.15nuclear poly(A) polymerase 4-like isoform X1 [Benincasa hispida][more]
XP_038884467.19.8e-1246.15nuclear poly(A) polymerase 4-like isoform X3 [Benincasa hispida][more]
XP_038884466.11.4e-1045.45nuclear poly(A) polymerase 4-like isoform X2 [Benincasa hispida][more]
XP_008444994.11.4e-1044.23PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo] >XP_008444995.... [more]
BLAST of Clc08G12420 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BCI76.8e-1144.23Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 ... [more]
A0A1S3BBN86.8e-1144.23Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 ... [more]
A0A1S3BBN22.6e-1044.44Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 ... [more]
A0A0A0LP303.4e-1045.95Polynucleotide adenylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G373380 PE... [more]
A0A6J1KC701.7e-0948.39Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 P... [more]
BLAST of Clc08G12420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G12420.1Clc08G12420.1mRNA