Clc08G12410 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G12410
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Polynucleotide adenylyltransferase
Location	ClcChr08: 23681851 .. 23682093 (+)
RNA-Seq Expression	Clc08G12410
Synteny	Clc08G12410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCTCATGTACGAGGAAGCAACTGCCCACCTTTGGTTTTTCCTGATGGACACAAGCGGTGGCCAAGCCATCCAGGCATGAAGGGACAGCAAGCTGATGTAGTTTGTGCTGATATGCCACAAGATCAATCTGGGATCACTGAGAAGGGAAAAAAAGGAAAAGTGATCATGAAGAAGAAGAGACGGAAAAGAAACAAGCCTTTATCAGTCAACCAGCAGGAAGAATTCTCCCATGCATGA

mRNA sequence

ATGGTTCCTCATGTACGAGGAAGCAACTGCCCACCTTTGGTTTTTCCTGATGGACACAAGCGGTGGCCAAGCCATCCAGGCATGAAGGGACAGCAAGCTGATGTAGTTTGTGCTGATATGCCACAAGATCAATCTGGGATCACTGAGAAGGGAAAAAAAGGAAAAGTGATCATGAAGAAGAAGAGACGGAAAAGAAACAAGCCTTTATCAGTCAACCAGCAGGAAGAATTCTCCCATGCATGA

Coding sequence (CDS)

ATGGTTCCTCATGTACGAGGAAGCAACTGCCCACCTTTGGTTTTTCCTGATGGACACAAGCGGTGGCCAAGCCATCCAGGCATGAAGGGACAGCAAGCTGATGTAGTTTGTGCTGATATGCCACAAGATCAATCTGGGATCACTGAGAAGGGAAAAAAAGGAAAAGTGATCATGAAGAAGAAGAGACGGAAAAGAAACAAGCCTTTATCAGTCAACCAGCAGGAAGAATTCTCCCATGCATGA

Protein sequence

MVPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFSHA

Homology

[Close]

BLAST of Clc08G12410 vs. NCBI nr
Match: XP_022132220.1 (nuclear poly(A) polymerase 2-like isoform X2 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-08
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++ 
Sbjct: 385 VSHVRRKQLPSFVFPDGHKR-AKLSRHEGQQADAVCADMLQDQSGITEKGKKRKIDSEET 444

Query: 62  RRKRNKPLSVNQQEEFS 79
             ++ + L  +Q  + S
Sbjct: 445 ETEKKQALVSSQPAQES 460

[Close]

BLAST of Clc08G12410 vs. NCBI nr
Match: XP_022132219.1 (nuclear poly(A) polymerase 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-08
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++ 
Sbjct: 479 VSHVRRKQLPSFVFPDGHKR-AKLSRHEGQQADAVCADMLQDQSGITEKGKKRKIDSEET 538

Query: 62  RRKRNKPLSVNQQEEFS 79
             ++ + L  +Q  + S
Sbjct: 539 ETEKKQALVSSQPAQES 554

[Close]

BLAST of Clc08G12410 vs. NCBI nr
Match: XP_022996854.1 (nuclear poly(A) polymerase 4-like isoform X2 [Cucurbita maxima] >XP_022996855.1 nuclear poly(A) polymerase 4-like isoform X2 [Cucurbita maxima] >XP_022996856.1 nuclear poly(A) polymerase 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++ 
Sbjct: 479 VSHVRRKQLPTFVFPDGHKRAKSVRHEGGQQTDPVCADMLQDQSGITEKGKKRKSDHEET 538

Query: 62  RRKRNKPLSVNQQEE 77
             ++ +  +    EE
Sbjct: 539 EMEKKQAFASQPAEE 553

[Close]

BLAST of Clc08G12410 vs. NCBI nr
Match: XP_022996853.1 (nuclear poly(A) polymerase 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++ 
Sbjct: 479 VSHVRRKQLPTFVFPDGHKRAKSVRHEGGQQTDPVCADMLQDQSGITEKGKKRKSDHEET 538

Query: 62  RRKRNKPLSVNQQEE 77
             ++ +  +    EE
Sbjct: 539 EMEKKQAFASQPAEE 553

[Close]

BLAST of Clc08G12410 vs. NCBI nr
Match: XP_008444994.1 (PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo] >XP_008444995.1 PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKK 61
           V HVR    P  VFPDGHKR  PS    +GQQAD VCADM QDQSGITEKGKK K    +
Sbjct: 507 VSHVRRKQLPTFVFPDGHKRAKPSR--HEGQQADTVCADMLQDQSGITEKGKKRK-SDHE 566

Query: 62  KRRKRNKPLSVNQQEEFS 79
           +  K  K   ++Q  E S
Sbjct: 567 EEEKEKKQAFISQPAEQS 581

[Close]

BLAST of Clc08G12410 vs. ExPASy TrEMBL
Match: A0A6J1BSG3 (Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005135 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++ 
Sbjct: 479 VSHVRRKQLPSFVFPDGHKR-AKLSRHEGQQADAVCADMLQDQSGITEKGKKRKIDSEET 538

Query: 62  RRKRNKPLSVNQQEEFS 79
             ++ + L  +Q  + S
Sbjct: 539 ETEKKQALVSSQPAQES 554

[Close]

BLAST of Clc08G12410 vs. ExPASy TrEMBL
Match: A0A6J1BRU6 (Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005135 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++ 
Sbjct: 385 VSHVRRKQLPSFVFPDGHKR-AKLSRHEGQQADAVCADMLQDQSGITEKGKKRKIDSEET 444

Query: 62  RRKRNKPLSVNQQEEFS 79
             ++ + L  +Q  + S
Sbjct: 445 ETEKKQALVSSQPAQES 460

[Close]

BLAST of Clc08G12410 vs. ExPASy TrEMBL
Match: A0A6J1K7X6 (Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.3e-08
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++ 
Sbjct: 479 VSHVRRKQLPTFVFPDGHKRAKSVRHEGGQQTDPVCADMLQDQSGITEKGKKRKSDHEET 538

Query: 62  RRKRNKPLSVNQQEE 77
             ++ +  +    EE
Sbjct: 539 EMEKKQAFASQPAEE 553

[Close]

BLAST of Clc08G12410 vs. ExPASy TrEMBL
Match: A0A1S3BCI7 (Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.3e-08
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKK 61
           V HVR    P  VFPDGHKR  PS    +GQQAD VCADM QDQSGITEKGKK K    +
Sbjct: 507 VSHVRRKQLPTFVFPDGHKRAKPSR--HEGQQADTVCADMLQDQSGITEKGKKRK-SDHE 566

Query: 62  KRRKRNKPLSVNQQEEFS 79
           +  K  K   ++Q  E S
Sbjct: 567 EEEKEKKQAFISQPAEQS 581

[Close]

BLAST of Clc08G12410 vs. ExPASy TrEMBL
Match: A0A6J1KC70 (Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.3e-08
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 2   VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKK 61
           V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++ 
Sbjct: 479 VSHVRRKQLPTFVFPDGHKRAKSVRHEGGQQTDPVCADMLQDQSGITEKGKKRKSDHEET 538

Query: 62  RRKRNKPLSVNQQEE 77
             ++ +  +    EE
Sbjct: 539 EMEKKQAFASQPAEE 553

The following BLAST results are available for this feature:

BLAST of Clc08G12410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132220.1	4.9e-08	50.65	nuclear poly(A) polymerase 2-like isoform X2 [Momordica charantia]	[more]
XP_022132219.1	4.9e-08	50.65	nuclear poly(A) polymerase 4-like isoform X1 [Momordica charantia]	[more]
XP_022996854.1	1.1e-07	50.67	nuclear poly(A) polymerase 4-like isoform X2 [Cucurbita maxima] >XP_022996855.1 ...	[more]
XP_022996853.1	1.1e-07	50.67	nuclear poly(A) polymerase 4-like isoform X1 [Cucurbita maxima]	[more]
XP_008444994.1	1.1e-07	55.13	PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo] >XP_008444995....	[more]

BLAST of Clc08G12410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G12410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSG3	2.4e-08	50.65	Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC11100513...	[more]
A0A6J1BRU6	2.4e-08	50.65	Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC11100513...	[more]
A0A6J1K7X6	5.3e-08	50.67	Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 P...	[more]
A0A1S3BCI7	5.3e-08	55.13	Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 ...	[more]
A0A6J1KC70	5.3e-08	50.67	Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 P...	[more]

BLAST of Clc08G12410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G12410.1	Clc08G12410.1	mRNA