Clc08G12400 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G12400
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Poly(A) polymerase
Location	ClcChr08: 23677952 .. 23681815 (+)
RNA-Seq Expression	Clc08G12400
Synteny	Clc08G12400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACAACTAACTAATTAAGATTAAAATTGGACAATTCAGAGTGGAACTAACTAAGATTAAATGACTTTCAATGATATGTTAAACGTAATTATTATTAAAAAGAAATAAAAAAAATTACAAAGACAAGCACTCCAAAGTGCAAAAACTAAACCCTTTTCCCCGCTTCGACGCCCTCTCTCCTTCATCTTCCTCTCTCTCTCTCTCTCTGTGCAGCCCTGAGTTTGACCGGTTTCCGAACCGTCAACCCATCGCCCGTACGGATTAAGCCTTCGATCTGTTCTCTCTTCAAACTTCTCCGACCTTCTCTTTCACCGCAGCCCGTTTCCTTCTGCCTCGTTTGCTTCTCTATGCTTTCTAATTCACCTTCTCGCATCAAATCTTGATCCCAATTGTTCCATTTCATCTTCTAATTTTGGGGCACCCACATCGCAAATGCTTTGCTGAGTTAGCTTCAGTTTTCTCTCATTTGCTCGGATCTTTTTCGTCAATTCTCGGTCAGATTCAGGGTTGCTGCGTGATTCGCTGTCTTTGCGTTAGCTGTTTCTTTTTCGTTCTTTAGGAAATGGTGGGTTCTGACAGTTCACCTGGTTTTCCGCCGGCGCCGAATTATGGTGTTACGAAACCGATTTCGCTTGCTGGGCCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGGTGGTATTTACTTTTGTTTTGTTTGGTTAAATCTCAATTGTTTTGGTGGGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTGCTGTGTGAAATTCCAGTAAATGAATTGAATTTCAATTTTGATTATGTTGTACGTATTGGTAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTCTAGGCCGCATTGACCAGGTGCAGACCTTGTTCACTTATATAGTCTTTTTTATTTTTGTTCTTTATGGAAATATTGGACTTTGCTCTCAATCCCACCTTCAACAAAACAGTGTTCTAATCAGTGACGCAAATGAGATTTTAGTTTATTATTATTGTTATTATTTTTTTAATGTTCAACGTTTTACTCCCGTTTATGTCATGAACTTCTTATCCTTAGTCATTTATCTTTTTATTCTAGATCGTTAAAAATTGGGTCAAGCAATTAACCCTCCTTAGAGGATACACAGAGCAGATGGTGGAAGATGCAAATGCTGTAATTTTTACTTTTGGGTCTTACCGTCTTGGGGTAAGCATAATATTTGATTAAGTTTTTGGGGAAAAAAACGTACTTTTGAGTTTGACATTATGTAACTCTTTGTACTTTCTCTTGTTGGGGCGTACAAACTGTTGGAATGTATGCTTGCTTAGAGCAACGATCTTTTAGTTCTTGGAAAGTTATGGTCTTCTTGTATTTTTGCCTTATTGGCCTGTGCATTTTATTCAAATATATGACTTATAAGTAGCCAAGGATGTGGCATAAAATTAACCATATGACAGGTACATGGACCAGGAAGTGACATAGACACTTTGTGTGTTGGACCATCTTACGTGAATAGAGAAGTGAGTAGTATAAAATGCTAATATTTTCAATTATATATAAATTGTTGATACTATCAACAATTTTTTTCACCTCCTTATGGGATTAAATTGAAACTTATTATTTATCTCAATTTGTTTGTTTCGAATGGAGGACTTCTTCATCATCCTGCATAATATTTTGGCCGAAATGGAAGAGGTTGCCGATCTTCAACCAGTTCCAGATGCTCATGTTCCAGTGATGAGATTCAAATTTCTGGGAATATCAATTGATCTTCTGTATGCAAGCATTTCTGCACTGGTTGTTCCAGAAGTAAGTTTTAGCAGTTTGTTTGAAGTTTTATCATATTTATTTTATGGTTTCAGAATTTATTGTTGTTATTTTCCCCCCCACAAAACTGTAACTGTATTTCTTTTTGTTACATCATTGTCGTTGATCATATGAGATTTCAAACTATTGTATATTAAATGCTCTCTCTCTATTTCTACATTTCTCTTAATGACGAATATTTCCATAATTCATGCAGAATTACCTGGCTTATAAAACTCCAATTGCCAAACTTTGTTATTTGAATAATCATGATGGCACTTGTCATTATAAATATGGAAATTCTTTGCAGTTTTATTTATAGTTTGAATCATTTCTACCAGCTTTTGTAAGTTCATTGTACCCTCCAGTGGTTGAGTTATATATTTGTTTCCCCCCCTTGCCCAACAAATGTGGTCTTGATCTACTCTTCAGGGATTTCTTTCTTGTATGTTATTTTATTTTATTATTATATGGATCGTGGCTGGGTAGAGAAAATTCACTCCCGAGAAGACTATTATTTACCAAAGGAATTTCTTTCTTCTCTCTTAACCTCATTCCCAACATTTTATTATCTGTCAAGTTGGTATTACTACCTTGAGTTTGTGTAGGTGAATTAATTGTTTGCTATGTGTGTATATGCGTTTGTTAACACTGAACAGGTGATACTATTTTGCATACCCTTTCTGTTGTAGAGTTAACTATGATTGGGTGGTATCACTTACTAATTGTTTTCCTACTACAATTCTCCCTTTTCCCCCCTGTCTTTTGGGCTGTTGCTATTTCCCATAAAAATTCTCTGCAAATTACTTAACCATCAGGACCTGGACATCTCTCATGGATCTGTGTTGTATAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCAGAGTTGCAGATCAGATTTTAAGACTTGTTCCAAACGTTGAGGTGAAAGTGGAAAACACATTTTGAGCCTGAGTTGTTTTACCATAAACCTATTCCTGATTTTTTCTGTAACATATAATTGTAGCACTTTCGCACGACAACTCAGATGGTTTAAAGTTTTGGGCCAAACGACGGGGGTGTATATTCAAATGTAAGCTGTATTATCATGGAGTTTTGCCTCTTGTTTCCACGTATGTTGTTCATATTTCACTTTCAATTTTTGTTTTTGTTTCTTGTATAGGTCACTGGGTTCCTTGGAGGTGTAAATTGGGCACTTTTGGTTGCTCAGGTATGCCAGCTTTACCCCAATGCAATTCCAAGCATGCTAGTTTCTCGTTTCTTCAGAGTGTACACCCAGTGGCGTTGGCCCAAATCCTGTAATGCTATGTTCAATAGAAGAGAATGAAATTGGATTTCCTGTTTGGGATCCTCGTAAAAATCCTCGTGATCGATTTCATCTATGCCAATAATAACTCCATGCTTACCCCTTGCATgaactctagctaTTTGTCTCAACTAGTACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGTATAACATCTGTGAGGTGAGGTATTTTTATTTGGATTCAAAATATTCTAAATATTAGCCTGCTCTTAATAGGTATTTTCTCTTACGTTCTGAGTGCCTTACAGGAGATTGACATGAAGCAAAGGCCCAGTGGAGTGTTTTGTTTGAGCCATATTTATTTTTCGAGACATACAAAAACTATCTACAGGTGGATATAATCGCAGCAGATGCTGACGATTTGCTAGCTTGGAAAGGATGGGTTGAATTCTCGCTTAGAACAGCTTACTGAAGGTAAATCTAATTAGCCCTTTCCTGATTATCTAATCTGAAGTTGGAGTGTCTTTCAACAGCCTGATATGTCTACTTTTCCTTCCTGCAGATAGAGAGGGACACAGGGGAATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCAGCAGTTTGACATACGGGGAACTGTTGATGAGTTCCGGCAGAGAGATTAA

mRNA sequence

AATACAACTAACTAATTAAGATTAAAATTGGACAATTCAGAGTGGAACTAACTAAGATTAAATGACTTTCAATGATATGTTAAACGTAATTATTATTAAAAAGAAATAAAAAAAATTACAAAGACAAGCACTCCAAAGTGCAAAAACTAAACCCTTTTCCCCGCTTCGACGCCCTCTCTCCTTCATCTTCCTCTCTCTCTCTCTCTCTGTGCAGCCCTGAGTTTGACCGGTTTCCGAACCGTCAACCCATCGCCCGTACGGATTAAGCCTTCGATCTGTTCTCTCTTCAAACTTCTCCGACCTTCTCTTTCACCGCAGCCCGTTTCCTTCTGCCTCGTTTGCTTCTCTATGCTTTCTAATTCACCTTCTCGCATCAAATCTTGATCCCAATTGTTCCATTTCATCTTCTAATTTTGGGGCACCCACATCGCAAATGCTTTGCTGAGTTAGCTTCAGTTTTCTCTCATTTGCTCGGATCTTTTTCGTCAATTCTCGGTCAGATTCAGGGTTGCTGCGTGATTCGCTGTCTTTGCGTTAGCTGTTTCTTTTTCGTTCTTTAGGAAATGGTGGGTTCTGACAGTTCACCTGGTTTTCCGCCGGCGCCGAATTATGGTGTTACGAAACCGATTTCGCTTGCTGGGCCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTCTAGGCCGCATTGACCAGATCGTTAAAAATTGGGTCAAGCAATTAACCCTCCTTAGAGGATACACAGAGCAGATGGTGGAAGATGCAAATGCTGTAATTTTTACTTTTGGGTCTTACCGTCTTGGGGTACATGGACCAGGAAGTGACATAGACACTTTGTGTGTTGGACCATCTTACGTGAATAGAGAAGACTTCTTCATCATCCTGCATAATATTTTGGCCGAAATGGAAGAGGTTGCCGATCTTCAACCAGTTCCAGATGCTCATGTTCCAGTGATGAGATTCAAATTTCTGGGAATATCAATTGATCTTCTGTATGCAAGCATTTCTGCACTGGTTGTTCCAGAAGACCTGGACATCTCTCATGGATCTGTGTTGTATAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCAGAGTTGCAGATCAGATTTTAAGACTTGTTCCAAACGTTGAGGTCACTGGGTTCCTTGGAGGTGTAAATTGGGCACTTTTGGTTGCTCAGCTTGGAAAGGATGGGTTGAATTCTCGCTTAGAACAGCTTACTGAAGATAGAGAGGGACACAGGGGAATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCAGCAGTTTGACATACGGGGAACTGTTGATGAGTTCCGGCAGAGAGATTAA

Coding sequence (CDS)

ATGGTGGGTTCTGACAGTTCACCTGGTTTTCCGCCGGCGCCGAATTATGGTGTTACGAAACCGATTTCGCTTGCTGGGCCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTCTAGGCCGCATTGACCAGATCGTTAAAAATTGGGTCAAGCAATTAACCCTCCTTAGAGGATACACAGAGCAGATGGTGGAAGATGCAAATGCTGTAATTTTTACTTTTGGGTCTTACCGTCTTGGGGTACATGGACCAGGAAGTGACATAGACACTTTGTGTGTTGGACCATCTTACGTGAATAGAGAAGACTTCTTCATCATCCTGCATAATATTTTGGCCGAAATGGAAGAGGTTGCCGATCTTCAACCAGTTCCAGATGCTCATGTTCCAGTGATGAGATTCAAATTTCTGGGAATATCAATTGATCTTCTGTATGCAAGCATTTCTGCACTGGTTGTTCCAGAAGACCTGGACATCTCTCATGGATCTGTGTTGTATAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCAGAGTTGCAGATCAGATTTTAAGACTTGTTCCAAACGTTGAGGTCACTGGGTTCCTTGGAGGTGTAAATTGGGCACTTTTGGTTGCTCAGCTTGGAAAGGATGGGTTGAATTCTCGCTTAGAACAGCTTACTGAAGATAGAGAGGGACACAGGGGAATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCAGCAGTTTGACATACGGGGAACTGTTGATGAGTTCCGGCAGAGAGATTAA

Protein sequence

MVGSDSSPGFPPAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPEDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEVTGFLGGVNWALLVAQLGKDGLNSRLEQLTEDREGHRGMLQCHPYPIEYSDTVQAMFSLCFFHGLAEKRGIKRPRRQQFDIRGTVDEFRQRD

Homology

[Close]

BLAST of Clc08G12400 vs. NCBI nr
Match: XP_022132220.1 (nuclear poly(A) polymerase 2-like isoform X2 [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 2.1e-128
Identity = 259/369 (70.19%), Postives = 265/369 (71.82%), Query Frame = 0


Query: 1   MVGSDSSPGF----PPAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           M GSDSS G      PA   GVTKPISLAGPTDADIQRN ELEKFLIDSGLYESKEEA  
Sbjct: 1   MAGSDSSTGILLAPQPARKNGVTKPISLAGPTDADIQRNTELEKFLIDSGLYESKEEATN 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEV DLQPVPDAHVPVMRFKF GISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFQGISIDLLYASISLLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE                     V
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQ---------------------------------------LGKDGL 300
           TGFLGGVNWALLVAQ                                         K  +
Sbjct: 241 TGFLGGVNWALLVAQEIELSKAQWSALFEPYLFFETYKNYLQVDMIAADADDLLAWKGWV 300

Query: 301 NSRLEQLT-EDREGHRGMLQCHPYPIEYSDTVQAMFSLCFFHGLAEKRGIKRPRRQQFDI 305
            SR  QLT +     RGMLQCHPYPIEYSDT +  +   FF GL  K G++    QQFDI
Sbjct: 301 ESRFRQLTLKIERDTRGMLQCHPYPIEYSDTSKPCYHCAFFMGLQRKEGLRGQGGQQFDI 360

[Close]

BLAST of Clc08G12400 vs. NCBI nr
Match: XP_038884467.1 (nuclear poly(A) polymerase 4-like isoform X3 [Benincasa hispida])

HSP 1 Score: 453.8 bits (1166), Expect = 1.2e-123
Identity = 266/463 (57.45%), Postives = 275/463 (59.40%), Query Frame = 0


Query: 1   MVGSDSSPGFP----PAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD+SPGFP    PA NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDTSPGFPSAPQPATNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISVLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPN+E                     +
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNIEHFRTTLRCLKFWAKRRGVYSNI 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. NCBI nr
Match: XP_008444997.1 (PREDICTED: nuclear poly(A) polymerase 4 isoform X3 [Cucumis melo])

HSP 1 Score: 442.6 bits (1137), Expect = 2.8e-120
Identity = 262/463 (56.59%), Postives = 270/463 (58.32%), Query Frame = 0


Query: 1   MVGSDSSPGFP----PAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD S G P    PA NYGVTKPISLAGPTDADI RNIELEKFL+DSGLYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPATNYGVTKPISLAGPTDADIHRNIELEKFLVDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILH+ILAEMEEV DLQPVPDAHVPVMRFKFLGISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHDILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNV---------------------EV 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNV                      V
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVGHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNNICEEIDLSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. NCBI nr
Match: XP_038884466.1 (nuclear poly(A) polymerase 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 442.2 bits (1136), Expect = 3.7e-120
Identity = 266/493 (53.96%), Postives = 275/493 (55.78%), Query Frame = 0


Query: 1   MVGSDSSPGFP----PAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD+SPGFP    PA NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDTSPGFPSAPQPATNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISVLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPN+E                     +
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNIEHFRTTLRCLKFWAKRRGVYSNI 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEVRLFYIWIQNS 360

[Close]

BLAST of Clc08G12400 vs. NCBI nr
Match: XP_038884464.1 (nuclear poly(A) polymerase 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 442.2 bits (1136), Expect = 3.7e-120
Identity = 266/493 (53.96%), Postives = 275/493 (55.78%), Query Frame = 0


Query: 1   MVGSDSSPGFP----PAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD+SPGFP    PA NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDTSPGFPSAPQPATNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISVLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPN+E                     +
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNIEHFRTTLRCLKFWAKRRGVYSNI 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEVRLFYIWIQNS 360

[Close]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot
Match: Q8VYW1 (Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.8e-99
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

[Close]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot
Match: O82312 (Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2)

HSP 1 Score: 345.9 bits (886), Expect = 4.7e-94
Identity = 213/455 (46.81%), Postives = 240/455 (52.75%), Query Frame = 0


Query: 6   SSPGFPPAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRID 65
           S P      +YG+T+P+S+AGP+ AD++RN+ELEKFL+D GLYESKEE  +REEV+ RID
Sbjct: 13  SQPVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRID 72

Query: 66  QIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNR-ED 125
           QIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGP +DIDTLCVGPSYVNR ED
Sbjct: 73  QIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREED 132

Query: 126 FFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPEDLDISHGS 185
           FFI   +ILAEMEEV +LQPV DAHVPVM+FKF GISIDLLYASIS LV+P+DLDIS+ S
Sbjct: 133 FFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSS 192

Query: 186 VLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------VTGFLGGVN 245
           VL +VDEQTVRSLNGCRVADQIL+LVPN E                     VTGFLGGVN
Sbjct: 193 VLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVN 252

Query: 246 WALLVAQL---------------------------------------------------- 305
           WALLVA+L                                                    
Sbjct: 253 WALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRD 312

[Close]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot
Match: Q9LMT2 (Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.4e-76
Identity = 142/238 (59.66%), Postives = 176/238 (73.95%), Query Frame = 0


Query: 16  YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQIVKNWVKQL 75
           +GV++PIS+ GPT+ D+ +  ELEK L D GLYESKEEA +REEVLG +DQIVK W+K +
Sbjct: 11  FGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQIVKTWIKTI 70

Query: 76  TLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNRE-DFFIILHNILA 135
           +  +G  +Q++ +ANA IFTFGSYRLGVHGPG+DIDTLCVGP +  RE DFF  L  +L+
Sbjct: 71  SRAKGLNDQLLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGELQRMLS 130

Query: 136 EMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPEDLDISHGSVLYNVDEQTV 195
           EM EV +L PVPDAHVP+M FK  G+SIDLLYA +   V+PEDLD+S  S+L N DEQTV
Sbjct: 131 EMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADEQTV 190

Query: 196 RSLNGCRVADQILRLVPNVE---------------------VTGFLGGVNWALLVAQL 232
           RSLNGCRV DQILRLVPN++                     V+GFLGG+NWALLVA++
Sbjct: 191 RSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARI 248

[Close]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot
Match: Q54J73 (Poly(A) polymerase OS=Dictyostelium discoideum OX=44689 GN=papA PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.8e-60
Identity = 119/237 (50.21%), Postives = 156/237 (65.82%), Query Frame = 0


Query: 17  GVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQIVKNWVKQLT 76
           GVT+PIS A P+  D + + ELE  LI   L+ES EE+ KREE+LG+++QIV+ W KQ++
Sbjct: 54  GVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQVS 113

Query: 77  LLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNREDFFIILHNILAEM 136
           L +GY EQ   +  A IFTFGSYRLGVHGPGSDIDTLCVGP ++ R DFF  L +IL   
Sbjct: 114 LKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRSDFFDDLSDILKVH 173

Query: 137 EEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPEDL-DISHGSVLYNVDEQTVR 196
            E+ +   V DA VPV+   F GI IDL+YA ++   +PE+L D+   S L N+DE+++ 
Sbjct: 174 PEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSIL 233

Query: 197 SLNGCRVADQILRLVPNV---------------------EVTGFLGGVNWALLVAQL 232
           SLNGCRV DQIL+LVPN+                      + GFLGGV+WALL A++
Sbjct: 234 SLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARI 290

[Close]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot
Match: P25500 (Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 6.8e-53
Identity = 103/241 (42.74%), Postives = 153/241 (63.49%), Query Frame = 0


Query: 11  PPAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQIVKN 70
           PP  +YG+T PISLA P + D     +L + L   G++E +EE  +R  +LG+++ +VK 
Sbjct: 15  PPQKHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKE 74

Query: 71  WVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNREDFFIILH 130
           W+++++  +   + ++E+    IFTFGSYRLGVH  G+DID LCV P +V+R DFF   +
Sbjct: 75  WIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFY 134

Query: 131 NILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPEDLDISHGSVLYNVD 190
           + L   EEV DL+ V +A VPV++  F GI ID+L+A ++   +PEDLD+   S+L N+D
Sbjct: 135 DKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLD 194

Query: 191 EQTVRSLNGCRVADQILRLVPNVE---------------------VTGFLGGVNWALLVA 231
            + +RSLNGCRV D+IL LVPN++                     + GFLGGV+WA+LVA
Sbjct: 195 IRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVA 254

[Close]

BLAST of Clc08G12400 vs. ExPASy TrEMBL
Match: A0A6J1BRU6 (Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005135 PE=3 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.0e-128
Identity = 259/369 (70.19%), Postives = 265/369 (71.82%), Query Frame = 0


Query: 1   MVGSDSSPGF----PPAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           M GSDSS G      PA   GVTKPISLAGPTDADIQRN ELEKFLIDSGLYESKEEA  
Sbjct: 1   MAGSDSSTGILLAPQPARKNGVTKPISLAGPTDADIQRNTELEKFLIDSGLYESKEEATN 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEV DLQPVPDAHVPVMRFKF GISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFQGISIDLLYASISLLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE                     V
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQ---------------------------------------LGKDGL 300
           TGFLGGVNWALLVAQ                                         K  +
Sbjct: 241 TGFLGGVNWALLVAQEIELSKAQWSALFEPYLFFETYKNYLQVDMIAADADDLLAWKGWV 300

Query: 301 NSRLEQLT-EDREGHRGMLQCHPYPIEYSDTVQAMFSLCFFHGLAEKRGIKRPRRQQFDI 305
            SR  QLT +     RGMLQCHPYPIEYSDT +  +   FF GL  K G++    QQFDI
Sbjct: 301 ESRFRQLTLKIERDTRGMLQCHPYPIEYSDTSKPCYHCAFFMGLQRKEGLRGQGGQQFDI 360

[Close]

BLAST of Clc08G12400 vs. ExPASy TrEMBL
Match: A0A1S3BBN8 (Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.4e-120
Identity = 262/463 (56.59%), Postives = 270/463 (58.32%), Query Frame = 0


Query: 1   MVGSDSSPGFP----PAPNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD S G P    PA NYGVTKPISLAGPTDADI RNIELEKFL+DSGLYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPATNYGVTKPISLAGPTDADIHRNIELEKFLVDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILH+ILAEMEEV DLQPVPDAHVPVMRFKFLGISIDLLYASIS LVVPE
Sbjct: 121 PSYVNREDFFIILHDILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNV---------------------EV 240
           DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNV                      V
Sbjct: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVGHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNNICEEIDLSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. ExPASy TrEMBL
Match: A0A6J1K7X6 (Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 5.2e-120
Identity = 262/463 (56.59%), Postives = 271/463 (58.53%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAP----NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSDSS  F PAP    NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEV DLQPVPDAHVPVMRFKF+GISIDLLYASIS  VVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           +L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVE                     V
Sbjct: 181 ELNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEDIDMSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. ExPASy TrEMBL
Match: A0A6J1HCH8 (Polynucleotide adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462377 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 5.2e-120
Identity = 262/463 (56.59%), Postives = 271/463 (58.53%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAP----NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSDSS  F PAP    NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEV DLQPVPDAHVPVMRFKF+GISIDLLYASIS  VVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           +L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVE                     V
Sbjct: 181 ELNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. ExPASy TrEMBL
Match: A0A6J1KC70 (Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 5.2e-120
Identity = 262/463 (56.59%), Postives = 271/463 (58.53%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAP----NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSDSS  F PAP    NYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK
Sbjct: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG
Sbjct: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120

Query: 121 PSYVNREDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVPE 180
           PSYVNREDFFIILHNILAEMEEV DLQPVPDAHVPVMRFKF+GISIDLLYASIS  VVPE
Sbjct: 121 PSYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPE 180

Query: 181 DLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE---------------------V 240
           +L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVE                     V
Sbjct: 181 ELNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 240

Query: 241 TGFLGGVNWALLVAQL-------------------------------------------- 300
           TGFLGGVNWALLVAQ+                                            
Sbjct: 241 TGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 300

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 301 DPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEDIDMSKAQWSA 360

[Close]

BLAST of Clc08G12400 vs. TAIR 10
Match: AT4G32850.2 (nuclear poly(a) polymerase )

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-100
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

[Close]

BLAST of Clc08G12400 vs. TAIR 10
Match: AT4G32850.3 (nuclear poly(a) polymerase )

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-100
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

[Close]

BLAST of Clc08G12400 vs. TAIR 10
Match: AT4G32850.6 (nuclear poly(a) polymerase )

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-100
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

[Close]

BLAST of Clc08G12400 vs. TAIR 10
Match: AT4G32850.5 (nuclear poly(a) polymerase )

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-100
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

[Close]

BLAST of Clc08G12400 vs. TAIR 10
Match: AT4G32850.1 (nuclear poly(a) polymerase )

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-100
Identity = 223/464 (48.06%), Postives = 248/464 (53.45%), Query Frame = 0


Query: 1   MVGSDSSPGFPPAPN----YGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +  G  P  N    YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVG 120
           REEVLGRIDQIVK+WVKQLT  RGYT+QMVEDANAVIFTFGSYRLGVHGPG+DIDTLCVG
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 121 PSYVNR-EDFFIILHNILAEMEEVADLQPVPDAHVPVMRFKFLGISIDLLYASISALVVP 180
           PSYVNR EDFFIILH+ILAEMEEV +L PVPDAHVPVM+FKF GI IDLLYASIS LVVP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 181 EDLDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVE--------------------- 240
           +DLDIS  SVL  VDE TVRSLNGCRVADQIL+LVPN E                     
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 241 VTGFLGGVNWALLVA---------------------------------------QLG--- 300
           VTGFLGGVNWALLVA                                       +LG   
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 301 ------------------------------------------------------------ 305
                                                                       
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

The following BLAST results are available for this feature:

BLAST of Clc08G12400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132220.1	2.1e-128	70.19	nuclear poly(A) polymerase 2-like isoform X2 [Momordica charantia]	[more]
XP_038884467.1	1.2e-123	57.45	nuclear poly(A) polymerase 4-like isoform X3 [Benincasa hispida]	[more]
XP_008444997.1	2.8e-120	56.59	PREDICTED: nuclear poly(A) polymerase 4 isoform X3 [Cucumis melo]	[more]
XP_038884466.1	3.7e-120	53.96	nuclear poly(A) polymerase 4-like isoform X2 [Benincasa hispida]	[more]
XP_038884464.1	3.7e-120	53.96	nuclear poly(A) polymerase 4-like isoform X1 [Benincasa hispida]	[more]

BLAST of Clc08G12400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYW1	4.8e-99	48.06	Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1	[more]
O82312	4.7e-94	46.81	Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2	[more]
Q9LMT2	3.4e-76	59.66	Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1	[more]
Q54J73	5.8e-60	50.21	Poly(A) polymerase OS=Dictyostelium discoideum OX=44689 GN=papA PE=3 SV=1	[more]
P25500	6.8e-53	42.74	Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3	[more]

BLAST of Clc08G12400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRU6	1.0e-128	70.19	Polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC11100513...	[more]
A0A1S3BBN8	1.4e-120	56.59	Polynucleotide adenylyltransferase OS=Cucumis melo OX=3656 GN=LOC103488167 PE=3 ...	[more]
A0A6J1K7X6	5.2e-120	56.59	Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 P...	[more]
A0A6J1HCH8	5.2e-120	56.59	Polynucleotide adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462377...	[more]
A0A6J1KC70	5.2e-120	56.59	Polynucleotide adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111491975 P...	[more]

BLAST of Clc08G12400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32850.2	3.4e-100	48.06	nuclear poly(a) polymerase	[more]
AT4G32850.3	3.4e-100	48.06	nuclear poly(a) polymerase	[more]
AT4G32850.6	3.4e-100	48.06	nuclear poly(a) polymerase	[more]
AT4G32850.5	3.4e-100	48.06	nuclear poly(a) polymerase	[more]
AT4G32850.1	3.4e-100	48.06	nuclear poly(a) polymerase	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002934	Polymerase, nucleotidyl transferase domain	PFAM	PF01909	NTP_transf_2	coord: 90..157 e-value: 2.1E-9 score: 37.6
IPR007012	Poly(A) polymerase, central domain	PFAM	PF04928	PAP_central	coord: 17..214 e-value: 1.2E-31 score: 123.7
IPR043519	Nucleotidyltransferase superfamily	GENE3D	3.30.460.10	Beta Polymerase, domain 2	coord: 49..204 e-value: 2.4E-76 score: 258.5
IPR043519	Nucleotidyltransferase superfamily	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 16..209
None	No IPR available	GENE3D	1.10.1410.10		coord: 17..230 e-value: 2.4E-76 score: 258.5
None	No IPR available	PANTHER	PTHR10682:SF36	NUCLEAR POLY(A) POLYMERASE 4	coord: 1..231
None	No IPR available	PANTHER	PTHR10682	POLY A POLYMERASE	coord: 1..231
None	No IPR available	PANTHER	PTHR10682	POLY A POLYMERASE	coord: 236..304
None	No IPR available	PANTHER	PTHR10682:SF36	NUCLEAR POLY(A) POLYMERASE 4	coord: 236..304
None	No IPR available	CDD	cd05402	NT_PAP_TUTase	coord: 56..174 e-value: 7.92006E-29 score: 104.947
IPR011068	Nucleotidyltransferase, class I-like, C-terminal	SUPERFAMILY	55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain	coord: 236..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G12400.1	Clc08G12400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031123	RNA 3'-end processing
biological_process	GO:0043631	RNA polyadenylation
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity