Clc08G09130 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G09130
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionhistone-lysine N-methyltransferase ATXR7
LocationClcChr08: 20588253 .. 20592197 (+)
RNA-Seq ExpressionClc08G09130
SyntenyClc08G09130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
atgaacttgggccggcccttgggccaaaggcaggtaatgcggctaacttagatcaattcgattcggttcaatctaaaagaatacgtagccgaccgtttccgaaccggttcagttagatcggtccacaaacgaaccgaatcgcaaataaaatcgcgtcaagaaagcagaaaaatacaaacgcaggtcaggatccgttggtagagagagagacgggagaagacgggggagaatcgacttctagcccctgccctagactccatgctcgtcgtccacccacaggtattcctttacctcaacctcaattccatcattatttcaagattatttatcactgctgcttcggatgaattcttgaagataatcacagatctccgcctgacgcggcttgtataaatgttctcgttgttcttaacctcctcttcacgctggatatccggtttccagcttaccacctgcagatgattgctaatataccaatggcattatctctctttcttccaatccgtcttctatctcctttgttttcgttgttttttcccctatctgctcgtcttcttgtttaagaccgcgaattttctctatttgagtgttcaatttgtttgttagggtatatctctaaggtttttccattcttcaactttatttattttgactagttagtgatcttgtatgtttgcgttattttcatgtatttgaacatcatcaaagtttttcccttcttctctattttattaaaattcaccgtagaacattattaatattgtcttgtagaagattatcttattgacattggggtggggggtggttggaatcctgtggacagcagtccactaagtgtttagccattatttttctttcttcctttttggatatccgtgagtgtctgagctagcttacgcacacctatgtgtcaagaaaactcgtaggatattaaatacttggccgtgaccacccagaaatgctcactatcaagtgttaaactatgttctttgagttccaaaaataaatatggggatgaggatggctttcgagggtatattagcattgccatccctattatgtctcgtgctttctacttcttgttctaagaaggaaacagctgccttgtcttttaagccttcatgcgagaacttactccttgtattaatcttactttccttcttggcttgttcattttatgagcttcatccatgtgctttatatcaaaagtttgtttccctttattattcattagggtttagttctatctgatggtgcattgtttctattttatttcatttgcaaaatttccaggtttagtcaaattcaggtttctacccagtatattcttggaacatggtttcctcaacagtacttctccacgagtatgataattccttattttcacgaaaaaggcgtaaagtgaccgagattcatcatcaagatccagatatattaagctgtgagtgtaaatatgattgtttccccttatcttcacaacttagcagagatggatgctccttctccaggtaatctataacttcgatctctcacccctttctcttcaacatttatgtttacttgtttatgtattgcttaaggcatgtttaggcatgataaatttttgtggagtcatgaacatacctgcaagtgcaaagttaggtccctatccaggattttcatatggggtgtagctttctttggtaagcagatattacaggattggcgtggatgttcttcaggacagaatctatttgggtcgaacatctaatttcgacctggtctacttctacttcatcttctgtcctcttcgttgttgtggggttgggacaaggagtcaaagtaatttcaatataggaaatgtaaagaaggggcatgcaaaagtaatctgaatcatcagtaagcctgggaaagaaaataagaatcaaatgctctttccccagatcttactgagtatactacatctttttgatgaaagctacgtttgtcattaaaaagacaaagaagagaaaatgtaaacaatgatggatggagatttgtaacatttctatcaaccaagttccacaaaaagcttctttgaagagacttccagtttgaagtatcctagtactgtgaagaaatatcatgctaggaggtactccaggctcccaaaacagtgcaccataaatgtagtcttaatatgtcttttctcataattggtctgtggtcccaccaaatgaaacttagagttggctccctttgctcttcattgatctacctttcaaagccactaaacaacttttgtggatttgcatggtttctgcagttttgtggaagattttggatgaaagaaatgcaagaatcttccaggaaaaaaagcaagagttcaaaggacattatagactccgccatgtttaataccttttttggtctaaagatatactggctataaaaacttccttattgcaaattggaaacatcttctgcatgccctttaatggaccccttttgtatatttggatatttcattcatcaatgaaattgtttcttattagaaaaacaagtcttctcttctcctcctaaaatttttattttcctgatttggtgtaccacttttcaccctcaaggttatattaagtggactatgacttgggtgggtaagtaagctgtggtccattaaggtagaaggaacttgcttgccacttatttctttaatgctcattttgagatgtttatattctggtggaggctgtttaaaattttctgatttagctggactttgttctcttggtgaaaaacaccttgatgtctctactttgtggaatttgacaggagagagggtgtttattgcgttgatttataatgcaacatagcattgaagcctccaaggtttacgaaaagaaactctattccctttacaaagtatcagaacttctttagttcctagcttcgagggactagccttctctatttgtggaggtggcttagtgaattggaaaccagcaaagcacagaaagaaattcttccaaactaataactacacaaacaaaccaatctccatgtaatactagttaactaatgtcaataaaaatgatacttattaaaaagagattcatgcactgttctgtctcttcaatcaatataccaagaatattttgaatcataaacatgtttccaaggaaagtttgcatgtgaaggtacgtccaatagtgtatcagtaagacaggtggttgtgtaaactatttggagatcattgttagaaagcaatggtaccattatattgcttctgtttcattgtactttaagcattagtctcttttcatttcatcaacgaaaagcctggtttttgttttaaaaaaaatagaaaaaaaaaaaagaacattggtaacataatcacagacaattagtggaaaaccaatatagagaataaaattttgaactcttcaatgatggcatgcatctaacatagtgtcgggtgtggtcccctgttttctttagttcctagagtaaggtgcgttggctttgacagatctgcatgttaggcatgctatctcaacgatcagtatttgtgataataatatgcatagtcttttcgtgttgaacattttttggtccttatttcttccacattttcaacattttctcattttcccacttctttgtattaacacaaactcaggtgcagggatagtgcttgcatatcttcatgttgcattgatagtgatgaaaaaaatggttcatactcatcagttgatatgagctgccagttaaacggcactagccctgatcttccagaatgttgcagttcggagggctcctcatttcaagataagggtttctctgggtattctttgcctacttgtgtaagtggttggatgtatgttaatgaacaaggtcaaatgtgtggcccttatattcaagaacagcttcatgaaggtttatctactggtttcttgccagatgagcttcttgtatatcctgttttaa

mRNA sequence

atgaacttgggccggcccttgggccaaaggcagatcggtccacaaacgaaccgaatcgcaaataaaatcgcgtcaagaaagcagaaaaatacaaacgcaggtcaggatccgttggtagagagagagacgggagaagacgggggagaatcgacttctagcccctgccctagactccatgctcgtcgtccacccacaggtttagtcaaattcaggcgtaaagtgaccgagattcatcatcaagatccagatatattaagctgtgagtgtaaatatgattgtttccccttatcttcacaacttagcagagatggatgctccttctccaggtgcagggatagtgcttgcatatcttcatgttgcattgatagtgatgaaaaaaatggttcatactcatcagttgatatgagctgccagttaaacggcactagccctgatcttccagaatgttgcagttcggagggctcctcatttcaagataagggtttctctgggtattctttgcctacttgtatgagcttcttgtatatcctgttttaa

Coding sequence (CDS)

atgaacttgggccggcccttgggccaaaggcagatcggtccacaaacgaaccgaatcgcaaataaaatcgcgtcaagaaagcagaaaaatacaaacgcaggtcaggatccgttggtagagagagagacgggagaagacgggggagaatcgacttctagcccctgccctagactccatgctcgtcgtccacccacaggtttagtcaaattcaggcgtaaagtgaccgagattcatcatcaagatccagatatattaagctgtgagtgtaaatatgattgtttccccttatcttcacaacttagcagagatggatgctccttctccaggtgcagggatagtgcttgcatatcttcatgttgcattgatagtgatgaaaaaaatggttcatactcatcagttgatatgagctgccagttaaacggcactagccctgatcttccagaatgttgcagttcggagggctcctcatttcaagataagggtttctctgggtattctttgcctacttgtatgagcttcttgtatatcctgttttaa

Protein sequence

MNLGRPLGQRQIGPQTNRIANKIASRKQKNTNAGQDPLVERETGEDGGESTSSPCPRLHARRPPTGLVKFRRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSYSSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMSFLYILF
Homology
[Close]
BLAST of Clc08G09130 vs. NCBI nr
Match: XP_011657471.1 (histone-lysine N-methyltransferase ATXR7 isoform X1 [Cucumis sativus] >KGN47780.1 hypothetical protein Csa_003313 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.0e-45
Identity = 92/107 (85.98%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           R KVTEI HQDPDILSCECKYDCFPLSSQLS DG SFSRCRD A +SSCCID DEKNGSY
Sbjct: 20  RCKVTEIQHQDPDILSCECKYDCFPLSSQLSTDGRSFSRCRDGASVSSCCIDIDEKNGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSSEGSSF+DKGFSGYS PTC+S ++Y+
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSEGSSFRDKGFSGYSFPTCVSGWMYV 126

[Close]
BLAST of Clc08G09130 vs. NCBI nr
Match: XP_038886064.1 (histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida] >XP_038886065.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida] >XP_038886066.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida] >XP_038886067.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida] >XP_038886068.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           RRKVT+I HQDPDIL  ECKYDCFP SSQLSRDG SF RCRDSACISSCCID DEKNGSY
Sbjct: 22  RRKVTDIQHQDPDILGRECKYDCFPSSSQLSRDGRSFCRCRDSACISSCCIDIDEKNGSY 81

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 82  SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLLTCVSGWMYV 128

[Close]
BLAST of Clc08G09130 vs. NCBI nr
Match: XP_038886070.1 (histone-lysine N-methyltransferase ATXR7 isoform X3 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           RRKVT+I HQDPDIL  ECKYDCFP SSQLSRDG SF RCRDSACISSCCID DEKNGSY
Sbjct: 22  RRKVTDIQHQDPDILGRECKYDCFPSSSQLSRDGRSFCRCRDSACISSCCIDIDEKNGSY 81

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 82  SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLLTCVSGWMYV 128

[Close]
BLAST of Clc08G09130 vs. NCBI nr
Match: XP_038886071.1 (histone-lysine N-methyltransferase ATXR7 isoform X4 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           RRKVT+I HQDPDIL  ECKYDCFP SSQLSRDG SF RCRDSACISSCCID DEKNGSY
Sbjct: 22  RRKVTDIQHQDPDILGRECKYDCFPSSSQLSRDGRSFCRCRDSACISSCCIDIDEKNGSY 81

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 82  SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLLTCVSGWMYV 128

[Close]
BLAST of Clc08G09130 vs. NCBI nr
Match: XP_022155891.1 (histone-lysine N-methyltransferase ATXR7 isoform X1 [Momordica charantia] >XP_022155892.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Momordica charantia] >XP_022155893.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Momordica charantia] >XP_022155894.1 histone-lysine N-methyltransferase ATXR7 isoform X1 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-44
Identity = 91/102 (89.22%), Postives = 92/102 (90.20%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           RRKVTEI HQDPD+LSCECKYDCFPLSSQLSRDG SF RC D ACISSCCI  DEK GSY
Sbjct: 20  RRKVTEIQHQDPDMLSCECKYDCFPLSSQLSRDGHSFCRCIDIACISSCCIGIDEKEGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS 173
           SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLP C S
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPNCAS 121

[Close]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match: A0A0A0KDJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401500 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45
Identity = 92/107 (85.98%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           R KVTEI HQDPDILSCECKYDCFPLSSQLS DG SFSRCRD A +SSCCID DEKNGSY
Sbjct: 20  RCKVTEIQHQDPDILSCECKYDCFPLSSQLSTDGRSFSRCRDGASVSSCCIDIDEKNGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSSEGSSF+DKGFSGYS PTC+S ++Y+
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSEGSSFRDKGFSGYSFPTCVSGWMYV 126

[Close]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match: A0A6J1DP52 (histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022899 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 7.1e-45
Identity = 91/102 (89.22%), Postives = 92/102 (90.20%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           RRKVTEI HQDPD+LSCECKYDCFPLSSQLSRDG SF RC D ACISSCCI  DEK GSY
Sbjct: 20  RRKVTEIQHQDPDMLSCECKYDCFPLSSQLSRDGHSFCRCIDIACISSCCIGIDEKEGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS 173
           SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLP C S
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPNCAS 121

[Close]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match: A0A6J1G2T9 (histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450288 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 9.2e-45
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           R KVTEI H DPD LSCECKYDCFP+SSQLSRDG SF RCRD ACISSCCID DEKNGSY
Sbjct: 20  RHKVTEIQHLDPDTLSCECKYDCFPVSSQLSRDGRSFCRCRDIACISSCCIDIDEKNGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSS+GSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSDGSSFQDKGFSGYSLATCVSGWMYV 126

[Close]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match: A0A6J1G2U4 (histone-lysine N-methyltransferase ATXR7 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450288 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 9.2e-45
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           R KVTEI H DPD LSCECKYDCFP+SSQLSRDG SF RCRD ACISSCCID DEKNGSY
Sbjct: 20  RHKVTEIQHLDPDTLSCECKYDCFPVSSQLSRDGRSFCRCRDIACISSCCIDIDEKNGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSS+GSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSDGSSFQDKGFSGYSLATCVSGWMYV 126

[Close]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match: A0A6J1KHK1 (histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493924 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-44
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 71  RRKVTEIHHQDPDILSCECKYDCFPLSSQLSRDGCSFSRCRDSACISSCCIDSDEKNGSY 130
           R KVTEI H DPD LSCECKYDCFP+SSQLSRDG SF RCRD ACISSCCID DEKNGSY
Sbjct: 20  RLKVTEIQHLDPDTLSCECKYDCFPVSSQLSRDGRSFCRCRDIACISSCCIDIDEKNGSY 79

Query: 131 SSVDMSCQLNGTSPDLPECCSSEGSSFQDKGFSGYSLPTCMS-FLYI 177
           SSVDMSCQLNGTSPDLPECCSS+GSSFQDKGFSGYSL TC+S ++Y+
Sbjct: 80  SSVDMSCQLNGTSPDLPECCSSDGSSFQDKGFSGYSLATCVSGWMYV 126

The following BLAST results are available for this feature:
BLAST of Clc08G09130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657471.15.0e-4585.98histone-lysine N-methyltransferase ATXR7 isoform X1 [Cucumis sativus] >KGN47780.... [more]
XP_038886064.11.1e-4486.92histone-lysine N-methyltransferase ATXR7 isoform X1 [Benincasa hispida] >XP_0388... [more]
XP_038886070.11.1e-4486.92histone-lysine N-methyltransferase ATXR7 isoform X3 [Benincasa hispida][more]
XP_038886071.11.1e-4486.92histone-lysine N-methyltransferase ATXR7 isoform X4 [Benincasa hispida][more]
XP_022155891.11.5e-4489.22histone-lysine N-methyltransferase ATXR7 isoform X1 [Momordica charantia] >XP_02... [more]
BLAST of Clc08G09130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ02.4e-4585.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401500 PE=4 SV=1[more]
A0A6J1DP527.1e-4589.22histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Momordica charantia OX=36... [more]
A0A6J1G2T99.2e-4585.05histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Cucurbita moschata OX=366... [more]
A0A6J1G2U49.2e-4585.05histone-lysine N-methyltransferase ATXR7 isoform X3 OS=Cucurbita moschata OX=366... [more]
A0A6J1KHK11.6e-4485.05histone-lysine N-methyltransferase ATXR7 isoform X1 OS=Cucurbita maxima OX=3661 ... [more]
BLAST of Clc08G09130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G09130.1Clc08G09130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051568 histone H3-K4 methylation
molecular_function GO:0042800 histone methyltransferase activity (H3-K4 specific)