Clc08G08410 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G08410
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 19898871 .. 19899137 (-)
RNA-Seq ExpressionClc08G08410
SyntenyClc08G08410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGACCTTTCTCTATTCTACTTCTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCGCCAACTACCATTTTCGCTTAAGAAATTTCCCCATCCCTCCTCACACTTGGCCTCTTTCATCTCCTTCCTCTTCTTCATACAGTCTAACTTGTTTCTTCTATGATTCTCTGTTCATCGACAGAGTGTGTTTCGTGTTAATCCCAGCTCTTATTCTGCTTTTCATCTTCTTTGCTGCTGCATTTCAGCTTTTATTGGACTGA

mRNA sequence

ATGGCTTTGACCTTTCTCTATTCTACTTCTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCGCCAACTACCATTTTCGCTTAAGAAATTTCCCCATCCCTCCTCACACTTGGCCTCTTTCATCTCCTTCCTCTTCTTCATACAGTCTAACTTGTTTCTTCTATGATTCTCTGTTCATCGACAGAGTGTGTTTCGTGTTAATCCCAGCTCTTATTCTGCTTTTCATCTTCTTTGCTGCTGCATTTCAGCTTTTATTGGACTGA

Coding sequence (CDS)

ATGGCTTTGACCTTTCTCTATTCTACTTCTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCGCCAACTACCATTTTCGCTTAAGAAATTTCCCCATCCCTCCTCACACTTGGCCTCTTTCATCTCCTTCCTCTTCTTCATACAGTCTAACTTGTTTCTTCTATGATTCTCTGTTCATCGACAGAGTGTGTTTCGTGTTAATCCCAGCTCTTATTCTGCTTTTCATCTTCTTTGCTGCTGCATTTCAGCTTTTATTGGACTGA

Protein sequence

MALTFLYSTSSFSSSSSLTRRFANYHFRLRNFPIPPHTWPLSSPSSSSYSLTCFFYDSLFIDRVCFVLIPALILLFIFFAAAFQLLLD
Homology
[Close]
BLAST of Clc08G08410 vs. NCBI nr
Match: KGN46065.1 (hypothetical protein Csa_005338 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 58/84 (69.05%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MALTFLYSTSSFSSSSSLTRRFANYHFRLRNFPIPPHTWPLSSPSSSSYSLTCFFYDSLF 60
          MALTFLYST+SFSSSSSLTRRF NYHFRLRN PI  H W LSS          F   SLF
Sbjct: 1  MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSS----------FLNHSLF 60

Query: 61 I-DRVCFV-LIPALILLFIFFAAA 83
          I  R+ FV LIPAL LLFIFFAAA
Sbjct: 61 ITGRIGFVLLIPALTLLFIFFAAA 74

[Close]
BLAST of Clc08G08410 vs. ExPASy TrEMBL
Match: A0A0A0K8L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.0e-13
Identity = 58/84 (69.05%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MALTFLYSTSSFSSSSSLTRRFANYHFRLRNFPIPPHTWPLSSPSSSSYSLTCFFYDSLF 60
          MALTFLYST+SFSSSSSLTRRF NYHFRLRN PI  H W LSS          F   SLF
Sbjct: 1  MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSS----------FLNHSLF 60

Query: 61 I-DRVCFV-LIPALILLFIFFAAA 83
          I  R+ FV LIPAL LLFIFFAAA
Sbjct: 61 ITGRIGFVLLIPALTLLFIFFAAA 74

The following BLAST results are available for this feature:
BLAST of Clc08G08410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46065.11.2e-1269.05hypothetical protein Csa_005338 [Cucumis sativus][more]
BLAST of Clc08G08410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G08410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8L26.0e-1369.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046430 PE=4 SV=1[more]
BLAST of Clc08G08410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G08410.1Clc08G08410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane