Clc08G08275 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G08275
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	40S ribosomal protein S17-like
Location	ClcChr08: 19781234 .. 19781659 (+)
RNA-Seq Expression	Clc08G08275
Synteny	Clc08G08275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

mRNA sequence

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Coding sequence (CDS)

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMIPPQAFGRGAGGPRRY

Homology

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BLAST of Clc08G08275 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal protein S17-3 [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 7.9e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. NCBI nr
Match: XP_004140911.1 (40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_005187 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGA GPRRY
Sbjct: 121 EPQAMIPPQAFGRGAVGPRRY 141

[Close]

BLAST of Clc08G08275 vs. NCBI nr
Match: XP_038884069.1 (40S ribosomal protein S17-4 [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAAFGMS+IPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ MIPPQAFGRGAGGPRRY
Sbjct: 121 EPQTMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 4.4e-68
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAM P QAFGRGAGGPRRY
Sbjct: 121 EPQAMAPLQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 231.1 bits (588), Expect = 7.7e-60
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-59
Identity = 120/139 (86.33%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMIPPQAFGRGAGG 138
             EPQA+    ++GRG GG
Sbjct: 121 AAEPQAVAALPSYGRGGGG 139

[Close]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.6e-59
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

[Close]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-58
Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy TrEMBL
Match: A0A5D3CKV8 (40S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001050 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.8e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy TrEMBL
Match: A0A1S3C4X5 (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.8e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy TrEMBL
Match: A0A0A0KB47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy TrEMBL
Match: A0A6J1BXJ2 (40S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.5e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGA GPRRY
Sbjct: 121 EPQAMIPPQAFGRGAVGPRRY 141

[Close]

BLAST of Clc08G08275 vs. ExPASy TrEMBL
Match: A0A6J1JIV8 (40S ribosomal protein S17-4 OS=Cucurbita maxima OX=3661 GN=LOC111487331 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAM P QAFGRGAGGPRRY
Sbjct: 121 EPQAMAPLQAFGRGAGGPRRY 141

[Close]

BLAST of Clc08G08275 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Clc08G08275 vs. TAIR 10
Match: AT3G10610.1 (Ribosomal S17 family protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.1e-60
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

The following BLAST results are available for this feature:

BLAST of Clc08G08275 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456611.1	7.9e-70	100.00	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal ...	[more]
XP_004140911.1	1.8e-69	99.29	40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein C...	[more]
XP_022134321.1	2.0e-68	98.58	40S ribosomal protein S17-4 [Momordica charantia]	[more]
XP_038884069.1	2.6e-68	97.87	40S ribosomal protein S17-4 [Benincasa hispida]	[more]
XP_022961398.1	4.4e-68	98.58	40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal p...	[more]

BLAST of Clc08G08275 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ17	7.7e-60	87.32	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49215	6.6e-59	86.33	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9SQZ1	8.6e-59	84.29	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]
Q9SJ36	1.9e-58	86.62	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
P49205	2.5e-58	85.92	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]

BLAST of Clc08G08275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKV8	3.8e-70	100.00	40S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3C4X5	3.8e-70	100.00	40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1	[more]
A0A0A0KB47	8.6e-70	99.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1	[more]
A0A6J1BXJ2	9.5e-69	98.58	40S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 ...	[more]
A0A6J1JIV8	2.1e-68	98.58	40S ribosomal protein S17-4 OS=Cucurbita maxima OX=3661 GN=LOC111487331 PE=3 SV=...	[more]

BLAST of Clc08G08275 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04800.1	5.5e-61	87.32	Ribosomal S17 family protein	[more]
AT5G04800.2	5.5e-61	87.32	Ribosomal S17 family protein	[more]
AT5G04800.3	5.5e-61	87.32	Ribosomal S17 family protein	[more]
AT5G04800.4	5.5e-61	87.32	Ribosomal S17 family protein	[more]
AT3G10610.1	6.1e-60	84.29	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..119 e-value: 6.0E-59 score: 197.3
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..141
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.921467
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.6E-32 score: 112.9
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF13	40S RIBOSOMAL PROTEIN S17-4	coord: 1..141
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G08275.1	Clc08G08275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome