Clc08G07950 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G07950
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionXS domain-containing protein
LocationClcChr08: 19482472 .. 19483384 (+)
RNA-Seq ExpressionClc08G07950
SyntenyClc08G07950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACTGAACGCCTAGTGAAGCATGCTTATATGTCCCACAAGGTTGGGTTGAGGGCTCAGCATTTAGGTCTTGCCAAAGCCATATGCGTTTTGATGGGGTGGAATAGTGTCCTTCCTCAAGACACTGTAACATGGGTTCCTGAGGTTTTGTCCAAGGAAGCAACTGTCGTTGAGAAGGAAGATCTTATCATCTGGCCTCCTGTTATTATTGTCCGCAACGTTTCTCTGTCACACAGCAGTCCTGATAAGTGGAGAGTTGTAACAATTGAAGCACTTGAGGCTTTCTTGAGAAGTAAGTGACATTTTATACTTCAAATTATCATGTTAAATAGTATGGTATATGCATTGTTTGCCTTTCTAACTGACCTGATCATAATTTAAATAGTGGAGACATGTTCTTGACCAAGAGTGTGAGTTTTGATTCCCCACATATACCTCGTACTAGCAATATGGTATATACATTGTTGTCTTGTCTTTTTAGTTGACCTTAGCATAACTCAATTACTTAAGGCATGCTCTTGACCTCAAAAAGATAATAATAATACTTTATTATTCTCGGATACTGAAGCATCAATGCTGTTGAATGACAGGTAAAAATCTGCTGAAGGGAAGAGTGAAAATGAATTTGGGTTGTCCTGCAGATCAAAGTGTAATGGTGTTGAAGTTTCTGCCTACCTTTTCTGGTTTAACAAACGCAGAAAGACTCAACAAATTCTTCTCTGAAAACAGACGTGGAAGAGAGGATTTTGAGTTGGCAAAGTGCAAAAATGGAGTTGAAATGGAAGGAGGCAAAATAGAAGAGGAAGTGCTTTATGGATACTTGGGAACTGCAGAGGATTTGGATGATGTTGAACTCAATATAAGGAAGTTGAGTATGATAAAGAGCAAAAAGGAAATTTTGGAGTTGTAA

mRNA sequence

ATGATTACTGAACGCCTAGTGAAGCATGCTTATATGTCCCACAAGGTTGGGTTGAGGGCTCAGCATTTAGGTCTTGCCAAAGCCATATGCGTTTTGATGGGGTGGAATAGTGTCCTTCCTCAAGACACTGTAACATGGGTTCCTGAGGTTTTGTCCAAGGAAGCAACTGTCGTTGAGAAGGAAGATCTTATCATCTGGCCTCCTGTTATTATTGTCCGCAACGTTTCTCTGTCACACAGCAGTCCTGATAAGTGGAGAGTTGTAACAATTGAAGCACTTGAGGCTTTCTTGAGAAGTAAAAATCTGCTGAAGGGAAGAGTGAAAATGAATTTGGGTTGTCCTGCAGATCAAAGTGTAATGGTGTTGAAGTTTCTGCCTACCTTTTCTGGTTTAACAAACGCAGAAAGACTCAACAAATTCTTCTCTGAAAACAGACGTGGAAGAGAGGATTTTGAGTTGGCAAAGTGCAAAAATGGAGTTGAAATGGAAGGAGGCAAAATAGAAGAGGAAGTGCTTTATGGATACTTGGGAACTGCAGAGGATTTGGATGATGTTGAACTCAATATAAGGAAGTTGAGTATGATAAAGAGCAAAAAGGAAATTTTGGAGTTGTAA

Coding sequence (CDS)

ATGATTACTGAACGCCTAGTGAAGCATGCTTATATGTCCCACAAGGTTGGGTTGAGGGCTCAGCATTTAGGTCTTGCCAAAGCCATATGCGTTTTGATGGGGTGGAATAGTGTCCTTCCTCAAGACACTGTAACATGGGTTCCTGAGGTTTTGTCCAAGGAAGCAACTGTCGTTGAGAAGGAAGATCTTATCATCTGGCCTCCTGTTATTATTGTCCGCAACGTTTCTCTGTCACACAGCAGTCCTGATAAGTGGAGAGTTGTAACAATTGAAGCACTTGAGGCTTTCTTGAGAAGTAAAAATCTGCTGAAGGGAAGAGTGAAAATGAATTTGGGTTGTCCTGCAGATCAAAGTGTAATGGTGTTGAAGTTTCTGCCTACCTTTTCTGGTTTAACAAACGCAGAAAGACTCAACAAATTCTTCTCTGAAAACAGACGTGGAAGAGAGGATTTTGAGTTGGCAAAGTGCAAAAATGGAGTTGAAATGGAAGGAGGCAAAATAGAAGAGGAAGTGCTTTATGGATACTTGGGAACTGCAGAGGATTTGGATGATGTTGAACTCAATATAAGGAAGTTGAGTATGATAAAGAGCAAAAAGGAAATTTTGGAGTTGTAA

Protein sequence

MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEKEDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLGTAEDLDDVELNIRKLSMIKSKKEILEL
Homology
BLAST of Clc08G07950 vs. NCBI nr
Match: XP_038884675.1 (uncharacterized protein LOC120075393 [Benincasa hispida] >XP_038884676.1 uncharacterized protein LOC120075393 [Benincasa hispida])

HSP 1 Score: 364.8 bits (935), Expect = 4.9e-97
Identity = 187/205 (91.22%), Postives = 196/205 (95.61%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M T+RLVKHAYMSHKVGLRA HLGLAKAICVLMGWNSV PQDTVTWVPEVLSKE  VV+K
Sbjct: 743 MNTQRLVKHAYMSHKVGLRALHLGLAKAICVLMGWNSVRPQDTVTWVPEVLSKEEIVVQK 802

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVIIVRN+SLS+SSPDKWRVVTI+ALE+FLRSKNLLKGRVKMNLGCPADQSVM
Sbjct: 803 EDLIIWPPVIIVRNLSLSYSSPDKWRVVTIKALESFLRSKNLLKGRVKMNLGCPADQSVM 862

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKC-KNGVEMEGGKIEEEVLYGYLGTA 180
           VLKFLPTFSGLT+AERL+KFFSENRRGREDFELAKC K GV MEG KIEEEVLYGYLGTA
Sbjct: 863 VLKFLPTFSGLTDAERLDKFFSENRRGREDFELAKCKKGGVGMEGDKIEEEVLYGYLGTA 922

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDLDDVELN+RKLSMIKSKKEILEL
Sbjct: 923 EDLDDVELNVRKLSMIKSKKEILEL 947

BLAST of Clc08G07950 vs. NCBI nr
Match: XP_008456586.1 (PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo] >XP_008456587.1 PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 180/205 (87.80%), Postives = 193/205 (94.15%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M ++RLVKHAYMSHKVGL+AQHLGL KAICVLMGWNSV PQDTVTWVPEVLSKE  V++K
Sbjct: 739 MNSQRLVKHAYMSHKVGLKAQHLGLGKAICVLMGWNSVFPQDTVTWVPEVLSKEEAVLQK 798

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVIIVRNVSLSH+SPDKWRVVTIEALE+FLRSKNLLKGRVKM+LGCPADQSVM
Sbjct: 799 EDLIIWPPVIIVRNVSLSHNSPDKWRVVTIEALESFLRSKNLLKGRVKMSLGCPADQSVM 858

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNG-VEMEGGKIEEEVLYGYLGTA 180
            LKFLPTFSGLT+AERLNKFFSENRRGREDFE+AKC NG V+MEG KIEEEVLYGYLGTA
Sbjct: 859 ALKFLPTFSGLTDAERLNKFFSENRRGREDFEVAKCNNGEVKMEGNKIEEEVLYGYLGTA 918

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDL DVELN+RK  MIKSKKEILE+
Sbjct: 919 EDLVDVELNVRKF-MIKSKKEILEM 942

BLAST of Clc08G07950 vs. NCBI nr
Match: TYK11753.1 (uncharacterized protein E5676_scaffold304G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 180/205 (87.80%), Postives = 193/205 (94.15%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M ++RLVKHAYMSHKVGL+AQHLGL KAICVLMGWNSV PQDTVTWVPEVLSKE  V++K
Sbjct: 776 MNSQRLVKHAYMSHKVGLKAQHLGLGKAICVLMGWNSVFPQDTVTWVPEVLSKEEAVLQK 835

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVIIVRNVSLSH+SPDKWRVVTIEALE+FLRSKNLLKGRVKM+LGCPADQSVM
Sbjct: 836 EDLIIWPPVIIVRNVSLSHNSPDKWRVVTIEALESFLRSKNLLKGRVKMSLGCPADQSVM 895

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNG-VEMEGGKIEEEVLYGYLGTA 180
            LKFLPTFSGLT+AERLNKFFSENRRGREDFE+AKC NG V+MEG KIEEEVLYGYLGTA
Sbjct: 896 ALKFLPTFSGLTDAERLNKFFSENRRGREDFEVAKCNNGEVKMEGNKIEEEVLYGYLGTA 955

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDL DVELN+RK  MIKSKKEILE+
Sbjct: 956 EDLVDVELNVRKF-MIKSKKEILEM 979

BLAST of Clc08G07950 vs. NCBI nr
Match: XP_011656567.1 (uncharacterized protein LOC101208223 [Cucumis sativus] >XP_031743187.1 uncharacterized protein LOC101208223 [Cucumis sativus] >KGN46030.2 hypothetical protein Csa_004949 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 5.7e-93
Identity = 179/205 (87.32%), Postives = 194/205 (94.63%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M ++RLVKHAYMSHKVGL+AQHLGLAKAICVLMGWNSV PQDTVTWVPEVLSKE  VV+K
Sbjct: 739 MNSQRLVKHAYMSHKVGLKAQHLGLAKAICVLMGWNSVHPQDTVTWVPEVLSKEEAVVQK 798

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVII+RN+SLSH+SPDKWRVVTIEALE+FLRSKNLLKGRVKM+LGCPADQSVM
Sbjct: 799 EDLIIWPPVIIIRNISLSHNSPDKWRVVTIEALESFLRSKNLLKGRVKMSLGCPADQSVM 858

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNG-VEMEGGKIEEEVLYGYLGTA 180
           VLKFLPTFSGLT+AERL+KFFSENRRGREDFE+AKC  G V+MEG KIEEEVLYGYLGTA
Sbjct: 859 VLKFLPTFSGLTDAERLHKFFSENRRGREDFEVAKCNYGEVKMEGNKIEEEVLYGYLGTA 918

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDL DVELN+RK  MIKSKKEILE+
Sbjct: 919 EDLVDVELNVRKF-MIKSKKEILEM 942

BLAST of Clc08G07950 vs. NCBI nr
Match: XP_022133809.1 (uncharacterized protein LOC111006280 [Momordica charantia])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 165/203 (81.28%), Postives = 182/203 (89.66%), Query Frame = 0

Query: 3   TERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEKED 62
           T+RLVKHAYMSH+ GLRAQHLGLAKAICVLMGWNS +PQDTVTWVPEVL KE  VV+KED
Sbjct: 747 TKRLVKHAYMSHRTGLRAQHLGLAKAICVLMGWNSAMPQDTVTWVPEVLPKEEAVVQKED 806

Query: 63  LIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVL 122
           LIIWPPVII+RN+SLSHS+PD+WRVVTIEALE FLRSKNLLKGRVK+ LG PADQSVMVL
Sbjct: 807 LIIWPPVIIIRNISLSHSNPDRWRVVTIEALETFLRSKNLLKGRVKITLGSPADQSVMVL 866

Query: 123 KFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKN-GVEMEGGKIEEEVLYGYLGTAED 182
           KFL  FSGLT+AERL+KFFSE R GR +FE+AKC+N G EMEG K EE +LYGYLG +ED
Sbjct: 867 KFLAMFSGLTDAERLHKFFSERRHGRVNFEVAKCRNGGAEMEGDKTEERMLYGYLGISED 926

Query: 183 LDDVELNIRKLSMIKSKKEILEL 205
           LDDVE N+RKLS IKSKKEILEL
Sbjct: 927 LDDVEFNVRKLSTIKSKKEILEL 949

BLAST of Clc08G07950 vs. ExPASy Swiss-Prot
Match: A5YVF1 (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum OX=4081 GN=SGS3 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-08
Identity = 45/150 (30.00%), Postives = 72/150 (48.00%), Query Frame = 0

Query: 49  EVLSKEATVVEKEDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVK 108
           EV  +   +  K+  I+WPP++I+ N  L     DKW  +  + L  +  S   +K R  
Sbjct: 289 EVYGRWGGMEFKDKEIVWPPMVIIMNTRLDKDENDKWIGMGNQELLEYFSSYAAVKAR-- 348

Query: 109 MNLGCPADQSVMVLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIE 168
            + G    + + +L F  +  G   A+RL++ FSEN R R+ +E    +      GGK  
Sbjct: 349 HSYGPQGHRGMSLLIFEASAVGYIEADRLSEHFSENGRNRDAWERRSAR---FYPGGK-- 408

Query: 169 EEVLYGYLGTAEDLDDVELNIRKLSMIKSK 199
             +LYGY+   +D+D    N  + S  KSK
Sbjct: 409 -RLLYGYMADKKDID----NFNQHSAGKSK 426

BLAST of Clc08G07950 vs. ExPASy Swiss-Prot
Match: A1Y2B7 (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays OX=4577 GN=SGS3 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 39/133 (29.32%), Postives = 59/133 (44.36%), Query Frame = 0

Query: 64  IIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVLK 123
           I+WPP++IV N  L     DKW+ +  + L  +       K R     G    + + VL 
Sbjct: 269 IVWPPMVIVMNTFLEKDEDDKWKGMGNQELLDYFGEYEASKAR--HAYGPSGHRGMSVLI 328

Query: 124 FLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLGTAEDLD 183
           F  +  G   AERL+K F      R  + L K +    + GGK +   LYG+L   ED++
Sbjct: 329 FESSAVGYMEAERLHKHFVNQGTDRNSWHLRKVR---FVPGGKRQ---LYGFLANKEDME 388

Query: 184 DVELNIRKLSMIK 197
               +    S +K
Sbjct: 389 AFNKHCHGKSRLK 393

BLAST of Clc08G07950 vs. ExPASy Swiss-Prot
Match: Q9LDX1 (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana OX=3702 GN=SGS3 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05
Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 0

Query: 59  EKEDLIIWPPVIIVRNVSLSHSSPDKW-RVVTIEALEAFLRSKNLLKGRVKMNLGCPADQ 118
           EK+  I+WPP++I+ N  L     DKW  +   E LE F + + L   R + + G    +
Sbjct: 296 EKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEAL---RARHSYGPQGHR 355

Query: 119 SVMVLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLG 178
            + VL F  + +G   AERL++  +E    R  +   +      M  G + +  LYG+L 
Sbjct: 356 GMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKR-----SMFSGGVRQ--LYGFLA 411

Query: 179 TAEDLD 184
           T +DLD
Sbjct: 416 TKQDLD 411

BLAST of Clc08G07950 vs. ExPASy Swiss-Prot
Match: A2ZIW7 (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica OX=39946 GN=SGS3 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 37/133 (27.82%), Postives = 58/133 (43.61%), Query Frame = 0

Query: 64  IIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVLK 123
           I+WPP+++V N  L     DKW+ +  + L  +       K R     G    + + VL 
Sbjct: 280 IVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKAR--HAYGPNGHRGMSVLI 339

Query: 124 FLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLGTAEDLD 183
           F  +  G   AERL+  F   R  R  +  A       + GGK +   LYG+L T +D++
Sbjct: 340 FDSSAVGYMEAERLHDHFVRQRTDRNTWNSA--HKVTFLPGGKRQ---LYGFLATKDDME 399

Query: 184 DVELNIRKLSMIK 197
               +    S +K
Sbjct: 400 TFNRHCHGKSRLK 405

BLAST of Clc08G07950 vs. ExPASy Swiss-Prot
Match: Q2QWE9 (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=SGS3 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 37/133 (27.82%), Postives = 58/133 (43.61%), Query Frame = 0

Query: 64  IIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVLK 123
           I+WPP+++V N  L     DKW+ +  + L  +       K R     G    + + VL 
Sbjct: 280 IVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKAR--HAYGPNGHRGMSVLI 339

Query: 124 FLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLGTAEDLD 183
           F  +  G   AERL+  F   R  R  +  A       + GGK +   LYG+L T +D++
Sbjct: 340 FDSSAVGYMEAERLHDHFVRQRTDRNTWNSA--HKVTFLPGGKRQ---LYGFLATKDDME 399

Query: 184 DVELNIRKLSMIK 197
               +    S +K
Sbjct: 400 TFNRHCHGKSRLK 405

BLAST of Clc08G07950 vs. ExPASy TrEMBL
Match: A0A1S3C369 (uncharacterized protein LOC103496499 OS=Cucumis melo OX=3656 GN=LOC103496499 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 180/205 (87.80%), Postives = 193/205 (94.15%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M ++RLVKHAYMSHKVGL+AQHLGL KAICVLMGWNSV PQDTVTWVPEVLSKE  V++K
Sbjct: 739 MNSQRLVKHAYMSHKVGLKAQHLGLGKAICVLMGWNSVFPQDTVTWVPEVLSKEEAVLQK 798

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVIIVRNVSLSH+SPDKWRVVTIEALE+FLRSKNLLKGRVKM+LGCPADQSVM
Sbjct: 799 EDLIIWPPVIIVRNVSLSHNSPDKWRVVTIEALESFLRSKNLLKGRVKMSLGCPADQSVM 858

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNG-VEMEGGKIEEEVLYGYLGTA 180
            LKFLPTFSGLT+AERLNKFFSENRRGREDFE+AKC NG V+MEG KIEEEVLYGYLGTA
Sbjct: 859 ALKFLPTFSGLTDAERLNKFFSENRRGREDFEVAKCNNGEVKMEGNKIEEEVLYGYLGTA 918

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDL DVELN+RK  MIKSKKEILE+
Sbjct: 919 EDLVDVELNVRKF-MIKSKKEILEM 942

BLAST of Clc08G07950 vs. ExPASy TrEMBL
Match: A0A5D3CIK8 (XS domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00720 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 180/205 (87.80%), Postives = 193/205 (94.15%), Query Frame = 0

Query: 1   MITERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEK 60
           M ++RLVKHAYMSHKVGL+AQHLGL KAICVLMGWNSV PQDTVTWVPEVLSKE  V++K
Sbjct: 776 MNSQRLVKHAYMSHKVGLKAQHLGLGKAICVLMGWNSVFPQDTVTWVPEVLSKEEAVLQK 835

Query: 61  EDLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVM 120
           EDLIIWPPVIIVRNVSLSH+SPDKWRVVTIEALE+FLRSKNLLKGRVKM+LGCPADQSVM
Sbjct: 836 EDLIIWPPVIIVRNVSLSHNSPDKWRVVTIEALESFLRSKNLLKGRVKMSLGCPADQSVM 895

Query: 121 VLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNG-VEMEGGKIEEEVLYGYLGTA 180
            LKFLPTFSGLT+AERLNKFFSENRRGREDFE+AKC NG V+MEG KIEEEVLYGYLGTA
Sbjct: 896 ALKFLPTFSGLTDAERLNKFFSENRRGREDFEVAKCNNGEVKMEGNKIEEEVLYGYLGTA 955

Query: 181 EDLDDVELNIRKLSMIKSKKEILEL 205
           EDL DVELN+RK  MIKSKKEILE+
Sbjct: 956 EDLVDVELNVRKF-MIKSKKEILEM 979

BLAST of Clc08G07950 vs. ExPASy TrEMBL
Match: A0A6J1BX13 (uncharacterized protein LOC111006280 OS=Momordica charantia OX=3673 GN=LOC111006280 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.0e-87
Identity = 165/203 (81.28%), Postives = 182/203 (89.66%), Query Frame = 0

Query: 3   TERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEKED 62
           T+RLVKHAYMSH+ GLRAQHLGLAKAICVLMGWNS +PQDTVTWVPEVL KE  VV+KED
Sbjct: 747 TKRLVKHAYMSHRTGLRAQHLGLAKAICVLMGWNSAMPQDTVTWVPEVLPKEEAVVQKED 806

Query: 63  LIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVL 122
           LIIWPPVII+RN+SLSHS+PD+WRVVTIEALE FLRSKNLLKGRVK+ LG PADQSVMVL
Sbjct: 807 LIIWPPVIIIRNISLSHSNPDRWRVVTIEALETFLRSKNLLKGRVKITLGSPADQSVMVL 866

Query: 123 KFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKN-GVEMEGGKIEEEVLYGYLGTAED 182
           KFL  FSGLT+AERL+KFFSE R GR +FE+AKC+N G EMEG K EE +LYGYLG +ED
Sbjct: 867 KFLAMFSGLTDAERLHKFFSERRHGRVNFEVAKCRNGGAEMEGDKTEERMLYGYLGISED 926

Query: 183 LDDVELNIRKLSMIKSKKEILEL 205
           LDDVE N+RKLS IKSKKEILEL
Sbjct: 927 LDDVEFNVRKLSTIKSKKEILEL 949

BLAST of Clc08G07950 vs. ExPASy TrEMBL
Match: A0A6J1HC30 (uncharacterized protein LOC111461470 OS=Cucurbita moschata OX=3662 GN=LOC111461470 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.8e-82
Identity = 164/209 (78.47%), Postives = 179/209 (85.65%), Query Frame = 0

Query: 3   TERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEKED 62
           T+RLVKHAYMSHK+GLRA+HLGLAKAICVLMGWNS LPQDTVTWVPE L KE  VV+KED
Sbjct: 745 TQRLVKHAYMSHKIGLRARHLGLAKAICVLMGWNSALPQDTVTWVPEDLHKEEAVVQKED 804

Query: 63  LIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVL 122
           LIIWPPV+IVRN+S+S S+P KW+V+TIEALEAFLRSKNLLKGRVKM+LGCPADQSVMVL
Sbjct: 805 LIIWPPVVIVRNISMSCSNPGKWKVITIEALEAFLRSKNLLKGRVKMSLGCPADQSVMVL 864

Query: 123 KFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKN------GVEMEGGKI-EEEVLYGY 182
           KFLPTFSGLT+AERLNKFF E R GR +FE +K  N      G   +G KI EEEVLYGY
Sbjct: 865 KFLPTFSGLTDAERLNKFFLEKRHGRVNFEQSKGDNGRANDVGEATKGNKIEEEEVLYGY 924

Query: 183 LGTAEDLDDVELNIRKLSMIKSKKEILEL 205
           LG AEDLD VE NIRK S IKSKKEILEL
Sbjct: 925 LGIAEDLDSVEFNIRKSSSIKSKKEILEL 953

BLAST of Clc08G07950 vs. ExPASy TrEMBL
Match: A0A6J1JSP3 (uncharacterized protein LOC111487181 OS=Cucurbita maxima OX=3661 GN=LOC111487181 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 162/209 (77.51%), Postives = 176/209 (84.21%), Query Frame = 0

Query: 3   TERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWNSVLPQDTVTWVPEVLSKEATVVEKED 62
           T+RLVKHAYMSHK+GLRAQHLGLAKAICVLMGWNS LPQDTV WVPE L KE  VV+KED
Sbjct: 745 TQRLVKHAYMSHKIGLRAQHLGLAKAICVLMGWNSALPQDTVIWVPEDLHKEEAVVQKED 804

Query: 63  LIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMVL 122
           LIIWPPVIIVRN+S+S S+P KW+V+TIEALEAFLRSKNLLKGRVKM+LGCPADQSVMVL
Sbjct: 805 LIIWPPVIIVRNISMSRSNPGKWKVITIEALEAFLRSKNLLKGRVKMSLGCPADQSVMVL 864

Query: 123 KFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKI-------EEEVLYGY 182
           KFLPTFSGLT+AERL+KFF E R GR +FE +K  NG   + G         EEEVLYGY
Sbjct: 865 KFLPTFSGLTDAERLDKFFLEKRHGRVNFEQSKGNNGKGNDVGDATERNEIEEEEVLYGY 924

Query: 183 LGTAEDLDDVELNIRKLSMIKSKKEILEL 205
           LG AEDLD VE NIRK S IKSKKEILEL
Sbjct: 925 LGIAEDLDSVEFNIRKSSSIKSKKEILEL 953

BLAST of Clc08G07950 vs. TAIR 10
Match: AT3G22430.1 (CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-21
Identity = 68/211 (32.23%), Postives = 106/211 (50.24%), Query Frame = 0

Query: 3   TERLVKHAYMSHKVGLRAQHLGLAKAICVLMGWN-SVLPQDTVTWVPEVLSKEATVVEKE 62
           T  LV H Y S     R  HLGL KA+CVLMGWN S  P ++  +  + L  +   + + 
Sbjct: 298 THSLVMHTYCSDDSSSRVHHLGLHKALCVLMGWNFSKAPDNSKAY--QNLPADEAAINQA 357

Query: 63  DLIIWPPVIIVRNVSLSHSSPDKWRVVTIEALEAFLRSKNLLKGRVKMNLGCPADQSVMV 122
            LIIWPP +IV+N S       +      + ++  +R   L  G+ K   G      + +
Sbjct: 358 QLIIWPPHVIVQNTSTGKGKEGRMEGFGNKTMDNRIRELGLTGGKSKSLYGREGHLGITL 417

Query: 123 LKFLPTFSGLTNAERLNKFFSENRRGREDF----ELAKCKNG------VEMEGGKIEEE- 182
            KF    SGL +A R+ ++F +  RGR+ +     L   K+       VE++G   E++ 
Sbjct: 418 FKFAGDDSGLRDAMRMAEYFEKINRGRKSWGRVQPLTPSKDDEKNPGLVEVDGRTGEKKR 477

Query: 183 VLYGYLGTAEDLDDVELNIRKLSMIKSKKEI 202
           + YGYL T  DLD V++  +K + I+S +E+
Sbjct: 478 IFYGYLATVTDLDKVDVETKKKTTIESLREL 506

BLAST of Clc08G07950 vs. TAIR 10
Match: AT5G23570.1 (XS domain-containing protein / XS zinc finger domain-containing protein-related )

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 0

Query: 59  EKEDLIIWPPVIIVRNVSLSHSSPDKW-RVVTIEALEAFLRSKNLLKGRVKMNLGCPADQ 118
           EK+  I+WPP++I+ N  L     DKW  +   E LE F + + L   R + + G    +
Sbjct: 296 EKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEAL---RARHSYGPQGHR 355

Query: 119 SVMVLKFLPTFSGLTNAERLNKFFSENRRGREDFELAKCKNGVEMEGGKIEEEVLYGYLG 178
            + VL F  + +G   AERL++  +E    R  +   +      M  G + +  LYG+L 
Sbjct: 356 GMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKR-----SMFSGGVRQ--LYGFLA 411

Query: 179 TAEDLD 184
           T +DLD
Sbjct: 416 TKQDLD 411

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038884675.14.9e-9791.22uncharacterized protein LOC120075393 [Benincasa hispida] >XP_038884676.1 unchara... [more]
XP_008456586.18.7e-9487.80PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo] >XP_008456587.1 P... [more]
TYK11753.18.7e-9487.80uncharacterized protein E5676_scaffold304G00720 [Cucumis melo var. makuwa][more]
XP_011656567.15.7e-9387.32uncharacterized protein LOC101208223 [Cucumis sativus] >XP_031743187.1 uncharact... [more]
XP_022133809.11.0e-8681.28uncharacterized protein LOC111006280 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A5YVF17.6e-0830.00Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum OX=4081 GN=SGS3 P... [more]
A1Y2B71.2e-0529.32Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays OX=4577 GN=SGS3 PE=1 ... [more]
Q9LDX13.5e-0530.95Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana OX=3702 GN=SGS3 P... [more]
A2ZIW71.3e-0427.82Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica OX=... [more]
Q2QWE91.3e-0427.82Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica O... [more]
Match NameE-valueIdentityDescription
A0A1S3C3694.2e-9487.80uncharacterized protein LOC103496499 OS=Cucumis melo OX=3656 GN=LOC103496499 PE=... [more]
A0A5D3CIK84.2e-9487.80XS domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1BX135.0e-8781.28uncharacterized protein LOC111006280 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1HC302.8e-8278.47uncharacterized protein LOC111461470 OS=Cucurbita moschata OX=3662 GN=LOC1114614... [more]
A0A6J1JSP31.4e-8177.51uncharacterized protein LOC111487181 OS=Cucurbita maxima OX=3661 GN=LOC111487181... [more]
Match NameE-valueIdentityDescription
AT3G22430.12.8e-2132.23CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); ... [more]
AT5G23570.12.5e-0630.95XS domain-containing protein / XS zinc finger domain-containing protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038588XS domain superfamilyGENE3D3.30.70.2890XS domaincoord: 57..203
e-value: 1.6E-31
score: 111.3
IPR005380XS domainPFAMPF03468XScoord: 61..183
e-value: 3.8E-20
score: 72.3
NoneNo IPR availablePANTHERPTHR46619RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATEDcoord: 1..204
NoneNo IPR availablePANTHERPTHR46619:SF4XS DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G07950.1Clc08G07950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA