Clc08G07925 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G07925
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 19455494 .. 19457940 (+)
RNA-Seq Expression	Clc08G07925
Synteny	Clc08G07925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGGTAGAAAACAAATAGATATTTAAAAACATGTAAGGTTATCCAATGGACCATGATACAATATCATATTGATTTGTCCAAAATATCTTGGATGGGTGTTTTCAAATGTCAATATCAATTAGGGCTTTGTTTTATTGTTTATATTCTTGGAAACAATTAATGACAGGCAATGATGAGAATGTTTTAAAAGTTTCCTTTCAATGACAGTATGGCACCACTTGAGTGTTCTCATTAAGCACAAATTCAAATATCCAATTGAGTTTTAAACCTGAAACAATGGGACACCACTTCAATATTCTCACCCCAAAATTAAAATATCCAATTGGGTTAGAAATAAAGACCAACCTGTTTACCAATTTATAATAAAAAATAGTGTAATCGTAATGAAATTTCATTAATAGATCAATCGTAATAGTGTAATCGTAATGAAATTTCATTAATAGATCAATTGTAATAGATCACAATCGCAAATGTATATCACGAATTATGAATCTGTCACATTTACTCTTACCGTTATTGTTATTATTATGTTTTAGGATCAAACAGTAATGGTAATGGTAAATTATTCCTAAGGAAATAAATATTAATAAAATATTTAATTTTATAAGTGACTATGGTAGTGCCTATTTTTCAATTCAAGATTTTTTTTTTTTTTTTTTTTTTTGTCTACATAAATGTTATTATCACCCACTAAACTAAAAGGAGGCGTTTTGAGCACTGAATTAGTTATTATAATCTATGAGTTATATTACTATTTTAGTCTACATAATATCTAATACTTGTATGGACTTGTGCACAATTGCGCAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGGTAATTTTGGCTTTTGTTTTGTAAATATAGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGGTATATGAGACTCGATTCTAGTTTGGTTTTATAGATCTTAAAAAAAATAAAAATAAAAAAATCACAAACTGATGTTCCCAAGATAAGGACTTGGTATGGACTTATGCTTCCAAACCAAAGAAAACTATTAACTTAAAGCCTTTGTCTCATAGAGCTTATACATAGTGTGGGCGTTTGTATCACAATGGTAACACTTGGTGGGGAGGTTTGTGCGAGAGCACCAAAGTTAGAGATATATCAGGATTGTTGATTGGAAAATAATTAGGGCATAAGGGTAATTAACTAGGTGCATCTTGGTTATAAATAGAGTGTGTTAGGGACCTTCGAGGAGAGAAGATTTTAGAAATAATTTCCATTGTGGGAATTTTGGGAGAGTGTAACTTTCTCGAAAAGCTATGTTATGTTGTAACTTCTTTAGATATTACAATATACATTTCTATCTTTTCGTGTCCCTCGTGTTCTTTATTGTTCTTATTAGGTGGTAATCTAATAGTTTACTGATCAATGGTCGCTAACACTTGCATGTCAAACACGGATCACTTAAGATGCAATCATGTCAACACTAATCCACAGAATCTCGTCAAGACTCTACAACTAAGCACACTAAACTGGATAATCACTTGGAAATTCCTCATGTTGCACTCTTTTTCATATTTTAGTTTCCCTATTTTTTTCGCAACTTGCAAACAACCCCACTAGTATATGCTCATGCACATCGCATTTCTTTTCCTCAGGCATGGGTGCATGGGTCCCACTGACAATTCCAAGCACTTGTGCCTAACCTAAAATGGGTTTAAGCCTCCCAACTGAAACAGCCTCCTATACATTGGAAAATAGACTACTATATATATATATATATAGAAAATGAAGCAATTTACTACAGAATGTTAGGAATTCATGAACTTCTGATGACATTTAAGCAAACACTTGTTTTGAGCTTTTGCTATGAACTAATCCTGAAAAGCCAAACCAAATGAGTGTGGGATTCAAAATATCCAACAGTTTATTTTATGTATAAAAAGTTGAAGATAAACTGATGTCCAGGCAGAACAAGCTCAAACTACAGGACAAATAACAACAATATTACACACTTACAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

mRNA sequence

ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

Coding sequence (CDS)

ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

Protein sequence

MTFLVLATLPHETYLPSLNNHKLQVRANVVNGVGYDLSELSYLVEEIVSLSLVAQVVSFMWCSREANGVAHHLARLVVSFASSFSKEVVTDSFELPVWFPLLFFRRQYDTRSNLLLRPISFQQVCRNQENVKWSSKVHEYRCKRKTALLEPEECITYLYTYNYIAIYTYLA

Homology

The following BLAST results are available for this feature:

BLAST of Clc08G07925 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G07925 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G07925 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G07925 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 29..76 e-value: 3.0E-5 score: 23.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G07925.1	Clc08G07925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity