Clc08G07870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G07870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein S14
Location	ClcChr08: 19398881 .. 19401117 (-)
RNA-Seq Expression	Clc08G07870
Synteny	Clc08G07870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGCAACGGCCCGCCTCCATTATTTTCCTTCCTTTCCCTCGTCGCGCATTTCTCGTATTCTGCAGTCGATTTTGTTCTCTTCCATCGCCCTCAATTCTCTGGTCTGCTAAAAGCTAGCCAGCCATTGCAGAGGATTTCAAAGCTTGAAGGTAACTCAATCTTCCTTTCGTTCTTCATTTCCTGTTTTCCATAACGAGTTTTCACTCTCCGCATTCAAACGGATGAGTTTGGATCAACGAGGGCCCGTTTAGATAGTTGGAACGAGTATCTTCATAGGCTTTTGAATTGGTATTGAAATTTTGAAATCATGAAATTCGCGAAATTAGGTCGAACGAAATGTCGGAGGACAAGCGGAACATTCTTGATCATTGTCGCCGACAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATACAAGTCTTCCCAACGATGTGCGTGAGGAGCATCGTTATAAGCTATCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGGCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAGATATTGGTACGAAATTATTCTTCACTATACTCTTACCCAGAAAAAGAAAAAAAAAAAAAGGTTCTCACTATGCATGTTTGAAAACGAAGGCAGTGATAGGACATATATATTGTATATGTATTAAGCTCCACTTATTTAGTGTTGAATGCGTGTTTATGATAAATTGGCTTGTTAAATGGTAGACTAAGTAAATCATTGTCATGGGAACATGGTATGAGATGGGTTAGGTATGAATATTTGTTCTCCTTTATGAACATACTCTGCCAATGAAAGCTTGGTTTTATTCTATCGCCAGTGACATTGATTACGGTGAACATTGTTCATTACTCACCGTGCAAAACAGTAACACTGGGGTCTGTTAGCTTAGCCGTTCTTTCTAAAAGCTGCAGTATTTTTCTTTAAAAGATTAAGGTTCAGTTGCTGGGTAGATTTATGTTTGCTGACTTACAGTTTTAACTAGTTAGGTTCAGTAATAAAGAGAGGGATGTTTGCTAGTTCAAATCTACAGATCTGGGTTCCTCTGTGGTTTTTTCCCATCATAGTACTAGAACTAGGTGTCGTACAATATTCTTAAAGCTTTTCATTTTTAAGATATGTATGAACAAGCTATAGTATGTATATGAACAAGCTATAGTATGTATAACTTGGTTCCTATATTCTTTATAGTTTCCCAAATTTTATAAGAAGATATCTCACCATCTTTAATTTTTTACTTTTCTTTGTTGTCATTTGGGGCATTTGGCTTGAGCCTAATAATACTATAATAGTATCTTCAGTTGAGAGGTTGTGTGGCGAAGTTTGGGAGTTTGCTAGATTTGTTACCTCCTTTTGAGTGCGTGTCACTAGGTCTTTTTATAATTACGATCTTGGTTTGATTTTGTTTTATATGAGTCCTGTAGTTTGTTCCTGGGCTTCTTATTTTTGTCAGGCTTGCTCTTTTCATGCCTTTGTAATTATCTCATTTTTTTCTCAAAAAAAGTCTTCTCCTCCCTACTTGCAGTTAAGAAAATTTCTACACTCTGTATATTTTACTCATTATAATAAGAATTCTCTTTCCATTGAGGAGAAACTAACTTGGAATACCTAATTCATGCGCTTTCTTTTTGTTAGAAGCTCACCTACATCCTTCTTATTTATCTGCAATGATATAGTTACCATTTGTGGTGATCCATTTCAACCATGAATACAAGGCATGTAGATGCTGTAGTCACTGAAGTATTGCGGTTATTTCACATGTTCTTTTGGTTGGTTTTTTTTTACACTGACTGGTCTAATTGTGTATCATGTGCAGATAGATGGTAGAGGCTTTTGTCATTCGGATCAATTGTCGTTGTTGGGTTGTTATATTTCTACCAGGTTATCTCTTTAATATCAGCAGGAATTAAATATAGACACTGAAAAAGGTGATGTTAATTGTAAGTTCCTTGGACATGATTCATGCCCGTTTACAAATATGACCAAAGAAGAGTAAAGGCTTTACTTTTGCTATTCAATAAGTGTTTTGTCTTAGACAGTTTCTAATGGTGTTAAATTTTTCTGATGGATAAAATTTTCTTTTCCCCTGCCATTGAATTGGTTGCACCATCCCCT

mRNA sequence

ATGAATGGCAACGGCCCGCCTCCATTATTTTCCTTCCTTTCCCTCGTCGCGCATTTCTCGTATTCTGCAGTCGATTTTGTTCTCTTCCATCGCCCTCAATTCTCTGGTCTGCTAAAAGCTAGCCAGCCATTGCAGAGGATTTCAAAGCTTGAAGTTTTCACTCTCCGCATTCAAACGGATGAGTTTGGATCAACGAGGGCCCGTTTAGATAGTTGGAACGAGTATCTTCATAGGCTTTTGAATTGGTCGAACGAAATGTCGGAGGACAAGCGGAACATTCTTGATCATTGTCGCCGACAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATACAAGTCTTCCCAACGATGTGCGTGAGGAGCATCGTTATAAGCTATCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGGCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAGATATTGATAGATGGTAGAGGCTTTTGTCATTCGGATCAATTGTCGTTGTTGGGTTGTTATATTTCTACCAGGTTATCTCTTTAATATCAGCAGGAATTAAATATAGACACTGAAAAAGGTGATGTTAATTGTAAGTTCCTTGGACATGATTCATGCCCGTTTACAAATATGACCAAAGAAGAGTAAAGGCTTTACTTTTGCTATTCAATAAGTGTTTTGTCTTAGACAGTTTCTAATGGTGTTAAATTTTTCTGATGGATAAAATTTTCTTTTCCCCTGCCATTGAATTGGTTGCACCATCCCCT

Coding sequence (CDS)

ATGAATGGCAACGGCCCGCCTCCATTATTTTCCTTCCTTTCCCTCGTCGCGCATTTCTCGTATTCTGCAGTCGATTTTGTTCTCTTCCATCGCCCTCAATTCTCTGGTCTGCTAAAAGCTAGCCAGCCATTGCAGAGGATTTCAAAGCTTGAAGTTTTCACTCTCCGCATTCAAACGGATGAGTTTGGATCAACGAGGGCCCGTTTAGATAGTTGGAACGAGTATCTTCATAGGCTTTTGAATTGGTCGAACGAAATGTCGGAGGACAAGCGGAACATTCTTGATCATTGTCGCCGACAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATACAAGTCTTCCCAACGATGTGCGTGAGGAGCATCGTTATAAGCTATCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGGCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAG

Protein sequence

MNGNGPPPLFSFLSLVAHFSYSAVDFVLFHRPQFSGLLKASQPLQRISKLEVFTLRIQTDEFGSTRARLDSWNEYLHRLLNWSNEMSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW

Homology

[Close]

BLAST of Clc08G07870 vs. NCBI nr
Match: XP_038884392.1 (ribosomal protein S14, mitochondrial [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MSEDKRNILDH RRQLAAKFE+KRKLYKAICND SLPNDVRE+HRYKLSKLPRNSSFTRL
Sbjct: 1   MSEDKRNILDHYRRQLAAKFEVKRKLYKAICNDPSLPNDVREDHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. NCBI nr
Match: XP_022938933.1 (uncharacterized protein LOC111444996 [Cucurbita moschata] >XP_022938934.1 uncharacterized protein LOC111444996 [Cucurbita moschata] >KAG7016311.1 Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-46
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           M+EDKRNILDH RRQLAAKFELKRKLYKA+CND SLPNDVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. NCBI nr
Match: XP_023550870.1 (uncharacterized protein LOC111808878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 6.2e-46
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           M+EDKRNILDH RRQLAAKFELKRKLYKA+CND SLPNDVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGL+MGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLVMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. NCBI nr
Match: KAG7032953.1 (Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           M+EDKRNILDH RRQLAAKFELKRKL+KA+CND SLPNDVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLFKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. NCBI nr
Match: XP_022134507.1 (uncharacterized protein LOC111006733 [Momordica charantia] >XP_022134508.1 uncharacterized protein LOC111006733 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-45
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MS DKRNILDH RRQLAAKFELKRKLYKA+CND SLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot
Match: P14875 (Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-37
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 89  DKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNR 148
           +KRNI DH RR LA K+EL+RKLYKA CND +LP+D+R++HRYKLSKLPRNSSF R+RNR
Sbjct: 2   EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNR 61

Query: 149 CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           CI TGRPR+VY+ FR+SRIVFR LAS+G +MG+KKSSW
Sbjct: 62  CISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99

[Close]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot
Match: P05716 (Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.5e-36
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 89  DKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNR 148
           +KRNI DH RR LAAK+EL+RKLYKA C D+ LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNR 62

Query: 149 CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           CI TGRPR+VY+LFR+SRIVFR LAS+G +MG+KKSSW
Sbjct: 63  CISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100

[Close]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot
Match: P49387 (Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-34
Identity = 69/98 (70.41%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 89  DKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNR 148
           +K+N  DH RR LAAKFEL+RKLYKA C D  LP+D+R++HRYKLSKLPRNSSF R+RNR
Sbjct: 3   EKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 62

Query: 149 CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           CI TGRPR+V + FR+ RIVFR LAS+G +MG+KKSSW
Sbjct: 63  CISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot
Match: P26873 (Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-31
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 93  ILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNRCIFT 152
           I DH RR L AK+ELKR  YKAIC D +LPN +R E+ +KLSKLPRNSS TR+RNRCIFT
Sbjct: 6   IRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFT 65

Query: 153 GRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           GRPR+VY+LFR+SRIVFR+LASKG ++G+ KS W
Sbjct: 66  GRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99

[Close]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot
Match: P46752 (Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS14 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-20
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 98  RRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNRCIFTGRPRA 157
           RR+L  K+E KR LYKA+ +D +L  D+R     KL+KLPRNSS  R++NRCI TGR  +
Sbjct: 11  RRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGRGHS 70

Query: 158 VYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           VY+  R+SRI FRDLA++GLI G  KSSW
Sbjct: 71  VYKFCRISRIKFRDLANQGLIQGCVKSSW 99

[Close]

BLAST of Clc08G07870 vs. ExPASy TrEMBL
Match: A0A6J1FKA4 (uncharacterized protein LOC111444996 OS=Cucurbita moschata OX=3662 GN=LOC111444996 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.3e-46
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           M+EDKRNILDH RRQLAAKFELKRKLYKA+CND SLPNDVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. ExPASy TrEMBL
Match: A0A6J1C264 (uncharacterized protein LOC111006733 OS=Momordica charantia OX=3673 GN=LOC111006733 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MS DKRNILDH RRQLAAKFELKRKLYKA+CND SLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Clc08G07870 vs. ExPASy TrEMBL
Match: A0A5D3CKB3 (Ribosomal protein S14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00590 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MS DKRNILD+ RRQLAAKFE+KR L+KAICND SLP DVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFEVKRNLFKAICNDPSLPKDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Clc08G07870 vs. ExPASy TrEMBL
Match: A0A1S4E169 (ribosomal protein S14, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496488 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MS DKRNILD+ RRQLAAKFE+KR L+KAICND SLP DVREEHRYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFEVKRNLFKAICNDPSLPKDVREEHRYKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Clc08G07870 vs. ExPASy TrEMBL
Match: A0A0A0LSR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386130 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 86  MSEDKRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRL 145
           MS DKRNILD+ RRQLAAKFELKR L+KAICND SLP D+REEHR KLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFELKRNLFKAICNDPSLPKDIREEHRNKLSKLPRNSSFTRL 60

Query: 146 RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Clc08G07870 vs. TAIR 10
Match: AT2G34520.1 (mitochondrial ribosomal protein S14 )

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-35
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 90  KRNILDHCRRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNRC 149
           KRN  DH RR LAA+FEL+RKLYKA C D  LP+++R+++RYKLSKLPRNS+F R+RNRC
Sbjct: 68  KRNSADHRRRLLAARFELRRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRNRC 127

Query: 150 IFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
           +FTGR R+V +LFRVSRIVFR LASKG +MG+ KSSW
Sbjct: 128 VFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164

[Close]

BLAST of Clc08G07870 vs. TAIR 10
Match: ATCG00330.1 (chloroplast ribosomal protein S14 )

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 98  RRQLAAKFELKRKLYKAICNDTSLPNDVREEHRYKLSKLPRNSSFTRLRNRCIFTGRPRA 157
           R++L  K+ L R+  K   +     ++  + H  KL   PRNS+ TRL  RC  TGRPRA
Sbjct: 13  RQKLEKKYHLIRRSSKKEISKIPSLSEKWKIHG-KLQSPPRNSAPTRLHRRCFSTGRPRA 72

Query: 158 VYQLFRVSRIVFRDLASKGLIMGVKKSSW 187
            Y+ F +S  + R++    L+ G  +SSW
Sbjct: 73  NYRDFGLSGHILREMVQACLLPGATRSSW 100

The following BLAST results are available for this feature:

BLAST of Clc08G07870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884392.1	2.8e-46	96.04	ribosomal protein S14, mitochondrial [Benincasa hispida]	[more]
XP_022938933.1	4.7e-46	95.05	uncharacterized protein LOC111444996 [Cucurbita moschata] >XP_022938934.1 unchar...	[more]
XP_023550870.1	6.2e-46	94.06	uncharacterized protein LOC111808878 [Cucurbita pepo subsp. pepo]	[more]
KAG7032953.1	1.4e-45	94.06	Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022134507.1	4.0e-45	95.05	uncharacterized protein LOC111006733 [Momordica charantia] >XP_022134508.1 uncha...	[more]

BLAST of Clc08G07870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14875	5.5e-37	73.47	Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE...	[more]
P05716	3.5e-36	73.47	Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2	[more]
P49387	3.3e-34	70.41	Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=...	[more]
P26873	1.5e-31	70.21	Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS14 P...	[more]
P46752	6.1e-20	57.30	Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS14 ...	[more]

BLAST of Clc08G07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKA4	2.3e-46	95.05	uncharacterized protein LOC111444996 OS=Cucurbita moschata OX=3662 GN=LOC1114449...	[more]
A0A6J1C264	1.9e-45	95.05	uncharacterized protein LOC111006733 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3CKB3	2.2e-41	86.14	Ribosomal protein S14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A1S4E169	2.2e-41	86.14	ribosomal protein S14, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496488 PE=...	[more]
A0A0A0LSR8	1.4e-40	85.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386130 PE=3 SV=1	[more]

BLAST of Clc08G07870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34520.1	8.9e-35	70.10	mitochondrial ribosomal protein S14	[more]
ATCG00330.1	2.1e-07	37.08	chloroplast ribosomal protein S14	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 132..185 e-value: 9.5E-24 score: 82.9
IPR001209	Ribosomal protein S14	PANTHER	PTHR19836	30S RIBOSOMAL PROTEIN S14	coord: 87..186
None	No IPR available	GENE3D	1.10.287.1480		coord: 88..176 e-value: 3.8E-31 score: 109.3
None	No IPR available	PANTHER	PTHR19836:SF30	RIBOSOMAL PROTEIN S14	coord: 87..186
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 93..186
IPR018271	Ribosomal protein S14, conserved site	PROSITE	PS00527	RIBOSOMAL_S14	coord: 148..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G07870.2	Clc08G07870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome