Clc08G07250 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G07250
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 18805651 .. 18806037 (-)
RNA-Seq ExpressionClc08G07250
SyntenyClc08G07250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTTCATCTATTAAACTGCAAGTACATACATACACAGGGGAAAAGAGTTAAAAGGTTACCGCCATTGATTATTTATTTGAAGGATGAAAAGAAATTTGTCGTTACTGTAGTAAGTGGTATGCACAGTGAAGCCACTGTTCTGAGTGGGTCAGAACGAACGACAAAGGTACGGAAGCAAAGGCAATGGCAAGTGGGTAGGCGGTGGTGCCCAACTCAGCCGGAACCGCTGAAAATCACTGCTCCTTTTCTCTTCTTTACCTTCAATTTCTTCTTCATTAAATGCCGCTCTTCGCTTCGCAACATCGCACCACGTTCCTTCATTCAAAGTCTCTCCTAG

mRNA sequence

ATGGAAATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTTCATCTATTAAACTGCAAGTACATACATACACAGGGGAAAAGAGTTAAAAGGTTACCGCCATTGATTATTTATTTGAAGGATGAAAAGAAATTTGTCGTTACTGTAGTAAGTGGTATGCACAGTGAAGCCACTGTTCTGAGTGGGTCAGAACGAACGACAAAGGTACGGAAGCAAAGGCAATGGCAAGTGGGTAGGCGGTGGTGCCCAACTCAGCCGGAACCGCTGAAAATCACTGCTCCTTTTCTCTTCTTTACCTTCAATTTCTTCTTCATTAAATGCCGCTCTTCGCTTCGCAACATCGCACCACGTTCCTTCATTCAAAGTCTCTCCTAG

Coding sequence (CDS)

ATGGAAATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTTCATCTATTAAACTGCAAGTACATACATACACAGGGGAAAAGAGTTAAAAGGTTACCGCCATTGATTATTTATTTGAAGGATGAAAAGAAATTTGTCGTTACTGTAGTAAGTGGTATGCACAGTGAAGCCACTGTTCTGAGTGGGTCAGAACGAACGACAAAGGTACGGAAGCAAAGGCAATGGCAAGTGGGTAGGCGGTGGTGCCCAACTCAGCCGGAACCGCTGAAAATCACTGCTCCTTTTCTCTTCTTTACCTTCAATTTCTTCTTCATTAAATGCCGCTCTTCGCTTCGCAACATCGCACCACGTTCCTTCATTCAAAGTCTCTCCTAG

Protein sequence

MEMAVRVKMQMLSLLSYVHLLNCKYIHTQGKRVKRLPPLIIYLKDEKKFVVTVVSGMHSEATVLSGSERTTKVRKQRQWQVGRRWCPTQPEPLKITAPFLFFTFNFFFIKCRSSLRNIAPRSFIQSLS
Homology
[Close]
BLAST of Clc08G07250 vs. NCBI nr
Match: KAA0036463.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 3  MAVRVKMQMLSLLSYVHLLNCKYIHTQGKRVKRLP-PLIIYLKDEKKFVVTVVSGMHSEA 62
          MAVRVKMQ          +     +T+ K +KRLP PLIIYLK EK+FVVTVVSGMHSE 
Sbjct: 1  MAVRVKMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEG 60

Query: 63 TVLSGSERTTKVRKQRQWQVGRRWCPTQPEPLKI 96
          TVLSGSE T     +     G +W    P P+ +
Sbjct: 61 TVLSGSEGTNDKGTEATKGNG-KWDYQDPPPVPL 93

[Close]
BLAST of Clc08G07250 vs. NCBI nr
Match: TYK00024.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 3  MAVRVKMQMLSLLSYVHLLNCKYIHTQGKRVKRLP-PLIIYLKDEKKFVVTVVSGMHSEA 62
          MAVRVKMQ          +     +T+ K +KRLP PLIIYLK EK+FVVTVVSGMHSE 
Sbjct: 1  MAVRVKMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEG 60

Query: 63 TVLSGSERTTKVRKQRQWQVGRRWCPTQPEPLKI 96
          TVLSGSE T     +     G +W    P P+ +
Sbjct: 61 TVLSGSEGTNDKGTEATKGNG-KWDYQDPPPVPL 93

[Close]
BLAST of Clc08G07250 vs. ExPASy TrEMBL
Match: A0A5D3BL63 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00690 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-09
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 3  MAVRVKMQMLSLLSYVHLLNCKYIHTQGKRVKRLP-PLIIYLKDEKKFVVTVVSGMHSEA 62
          MAVRVKMQ          +     +T+ K +KRLP PLIIYLK EK+FVVTVVSGMHSE 
Sbjct: 1  MAVRVKMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEG 60

Query: 63 TVLSGSERTTKVRKQRQWQVGRRWCPTQPEPLKI 96
          TVLSGSE T     +     G +W    P P+ +
Sbjct: 61 TVLSGSEGTNDKGTEATKGNG-KWDYQDPPPVPL 93

[Close]
BLAST of Clc08G07250 vs. ExPASy TrEMBL
Match: A0A5A7T0Q3 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00320 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-09
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 3  MAVRVKMQMLSLLSYVHLLNCKYIHTQGKRVKRLP-PLIIYLKDEKKFVVTVVSGMHSEA 62
          MAVRVKMQ          +     +T+ K +KRLP PLIIYLK EK+FVVTVVSGMHSE 
Sbjct: 1  MAVRVKMQNAITSKLRPSIKLVSRYTEEKELKRLPTPLIIYLKHEKEFVVTVVSGMHSEG 60

Query: 63 TVLSGSERTTKVRKQRQWQVGRRWCPTQPEPLKI 96
          TVLSGSE T     +     G +W    P P+ +
Sbjct: 61 TVLSGSEGTNDKGTEATKGNG-KWDYQDPPPVPL 93

The following BLAST results are available for this feature:
BLAST of Clc08G07250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036463.11.6e-0850.00putative aquaporin PIP2-5 [Cucumis melo var. makuwa][more]
TYK00024.11.6e-0850.00putative aquaporin PIP2-5 [Cucumis melo var. makuwa][more]
BLAST of Clc08G07250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G07250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BL637.7e-0950.00Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7T0Q37.7e-0950.00Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of Clc08G07250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G07250.1Clc08G07250.1mRNA