Clc08G06550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G06550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	extensin-3-like
Location	ClcChr08: 17996207 .. 17996963 (+)
RNA-Seq Expression	Clc08G06550
Synteny	Clc08G06550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACGTCAGCCAAGCTTGTAGTAATATTCTCCTTGGTTATTTGTATTCGTTTATTTGATTATTTGGCTTTATAATTGTGTGTATATATTGATCCTGCCATTCCTCTTTATTGTGTGAGGAAATAGTACAAATGAGCAATAATACTCCTTAGAGAACAATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAATACTATGTTTGTATATTTCTTGCGATTTAATTGTGGTTCAATTATCATTATCCCATGCATCAAGGGAGAATAAGTATTGAATGGCAACATTTCTTCTATACTTCTCCATCTTATTTTTTATTCCCC

mRNA sequence

CCACGTCAGCCAAGCTTGTAGTAATATTCTCCTTGGTTATTTGTATTCGTTTATTTGATTATTTGGCTTTATAATTGTGTGTATATATTGATCCTGCCATTCCTCTTTATTGTGTGAGGAAATAGTACAAATGAGCAATAATACTCCTTAGAGAACAATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAATACTATGTTTGTATATTTCTTGCGATTTAATTGTGGTTCAATTATCATTATCCCATGCATCAAGGGAGAATAAGTATTGAATGGCAACATTTCTTCTATACTTCTCCATCTTATTTTTTATTCCCC

Coding sequence (CDS)

ATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAA

Protein sequence

MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPWGWTIPRSPPPPF

Homology

[Close]

BLAST of Clc08G06550 vs. NCBI nr
Match: XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-35
Identity = 91/131 (69.47%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFI 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFI
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60

Query: 61  FPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPAS 120
           FPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+  PP SYH  PPP  
Sbjct: 61  FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120

Query: 121 PLSVKKLYISQ 128
           PL  KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127

[Close]

BLAST of Clc08G06550 vs. NCBI nr
Match: KAA0058946.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPP 135
           S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP   P   KKL++S AR + P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of Clc08G06550 vs. NCBI nr
Match: TYK10982.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPP 135
           S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP   P   KKL++S AR + P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of Clc08G06550 vs. NCBI nr
Match: KAE8647164.1 (hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypothetical protein Csa_018930, partial [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 81/134 (60.45%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRP 75
           M LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F P P +KT +HT  P
Sbjct: 1   MSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF-PSPFRKTFRHTWLP 60

Query: 76  PPSLPL-QGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHS 135
           PPS P  Q L RPIVPY+P+KFPPPPSRK+   PPSYH  PPPA  L  +KLY+S+ R +
Sbjct: 61  PPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRA 120

Query: 136 VPPPPPKEQPPYPW 146
            PPPPP +  PY W
Sbjct: 121 TPPPPPIK--PYQW 128

[Close]

BLAST of Clc08G06550 vs. NCBI nr
Match: KAA0058948.1 (extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-24
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 44  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRP 103
           P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW 146
            PP SYH  PPP  PL  KKLY+S+ R + PPPPPK+  PY W
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102

[Close]

BLAST of Clc08G06550 vs. ExPASy TrEMBL
Match: A0A1S3CSG8 (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 91/131 (69.47%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFI 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFI
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60

Query: 61  FPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPAS 120
           FPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+  PP SYH  PPP  
Sbjct: 61  FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120

Query: 121 PLSVKKLYISQ 128
           PL  KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127

[Close]

BLAST of Clc08G06550 vs. ExPASy TrEMBL
Match: A0A0A0KD80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 100/162 (61.73%), Postives = 114/162 (70.37%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIF 60
           MES NP+FVFFL IIM LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F
Sbjct: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF 60

Query: 61  PPPPSKKTHKHTSRPPPSLPL-QGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPAS 120
            P P +KT +HT  PPPS P  Q L RPIVPY+P+KFPPPPSRK+   PPSYH  PPPA 
Sbjct: 61  -PSPFRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPAL 120

Query: 121 PLSVKKLYISQARHSVPPPPPKEQPPYPW-GWTIPRSPPPPF 158
            L  +KLY+S+ R + PPPPP +  PY W    I +SPPPPF
Sbjct: 121 LLLARKLYMSEVRRATPPPPPIK--PYQWPKGKIRKSPPPPF 156

[Close]

BLAST of Clc08G06550 vs. ExPASy TrEMBL
Match: A0A5A7UXN4 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001280 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPP 135
           S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP   P   KKL++S AR + P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of Clc08G06550 vs. ExPASy TrEMBL
Match: A0A5D3CI60 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00140 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPP 135
           S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP   P   KKL++S AR + P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of Clc08G06550 vs. ExPASy TrEMBL
Match: A0A5D3CVI1 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00010 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 44  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRP 103
           P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW 146
            PP SYH  PPP  PL  KKLY+S+ R + PPPPPK+  PY W
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102

[Close]

BLAST of Clc08G06550 vs. TAIR 10
Match: AT2G43150.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05
Identity = 51/131 (38.93%), Postives = 60/131 (45.80%), Query Frame = 0


Query: 34  PSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP---SLPLQGLGRPIVPYY 93
           P P      PPP   P  PYY +  PPPP K      S PPP   S P   +  P  PYY
Sbjct: 53  PPPYEYKSPPPPVKSPPPPYY-YHSPPPPVK------SPPPPYVYSSPPPPVKSPPPPYY 112

Query: 94  PFKFPPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPWGWTIP 153
            +  PPPP +  P P  YH  PPP         Y     HS  PPPP + PP P+ +  P
Sbjct: 113 -YHSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYY-----HS--PPPPVKSPPPPYYYHSP 168

Query: 154 ----RSPPPPF 158
               +SPPPP+
Sbjct: 173 PPPVKSPPPPY 168

The following BLAST results are available for this feature:

BLAST of Clc08G06550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466986.1	4.1e-35	69.47	PREDICTED: extensin-3-like, partial [Cucumis melo]	[more]
KAA0058946.1	1.3e-25	62.90	extensin-3-like [Cucumis melo var. makuwa]	[more]
TYK10982.1	1.3e-25	62.90	extensin-3-like [Cucumis melo var. makuwa]	[more]
KAE8647164.1	1.3e-25	60.45	hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypotheti...	[more]
KAA0058948.1	4.3e-24	64.08	extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis ...	[more]

BLAST of Clc08G06550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G06550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CSG8	2.0e-35	69.47	extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1	[more]
A0A0A0KD80	2.9e-34	61.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1	[more]
A0A5A7UXN4	6.5e-26	62.90	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00128...	[more]
A0A5D3CI60	6.5e-26	62.90	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G0014...	[more]
A0A5D3CVI1	2.1e-24	64.08	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00...	[more]

BLAST of Clc08G06550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43150.1	2.1e-05	38.93	Proline-rich extensin-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 81..97 score: 28.24 coord: 55..76 score: 31.82 coord: 34..46 score: 44.62 coord: 102..119 score: 35.56 coord: 135..157 score: 30.77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G06550.1	Clc08G06550.1	mRNA