Clc08G06440 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G06440
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 17885578 .. 17885949 (+)
RNA-Seq Expression	Clc08G06440
Synteny	Clc08G06440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

mRNA sequence

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

Coding sequence (CDS)

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

Protein sequence

MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSESISDHPSSSTSSNRREESVPVGSLSEPHFSAAGFSKRFHIAAAATVARRRSEYLRLWRLGRAGSAIPFS

Homology

[Close]

BLAST of Clc08G06440 vs. NCBI nr
Match: KAE8647158.1 (hypothetical protein Csa_018821 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-10
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSE--SISD 60
          M++SPKSRKRK+K PPQPPRA +A  KTIEV+E      FGY+V+QLL G GS   SI+D
Sbjct: 1  MLNSPKSRKRKLKTPPQPPRATRA--KTIEVEEPD---GFGYMVEQLLFGSGSSGGSITD 60

Query: 61 HPSSSTSSNRREESVPVGSLS 80
          HPSSS S+  R+E VP+G LS
Sbjct: 61 HPSSS-SNTPRDEYVPMGILS 75

[Close]

BLAST of Clc08G06440 vs. NCBI nr
Match: KAA0058917.1 (hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713.1 hypothetical protein E5676_scaffold1607G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGS-ESISDH 60
          M++ PKSRKRK+K+ PQPPR  KA  KTIEV EE D L  GY+V+Q LTG GS  SI DH
Sbjct: 1  MVNPPKSRKRKLKRSPQPPRPTKA--KTIEV-EEPDGL--GYMVEQFLTGSGSGGSIPDH 60

Query: 61 PSSSTSSNRREESVPVGSLS 80
            SS+S +R ++ VP+G LS
Sbjct: 61 YPSSSSDDREDQYVPMGILS 75

[Close]

BLAST of Clc08G06440 vs. ExPASy TrEMBL
Match: A0A0A0KF90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSE--SISD 60
          M++SPKSRKRK+K PPQPPRA +A  KTIEV+E      FGY+V+QLL G GS   SI+D
Sbjct: 1  MLNSPKSRKRKLKTPPQPPRATRA--KTIEVEEPD---GFGYMVEQLLFGSGSSGGSITD 60

Query: 61 HPSSSTSSNRREESVPVGSLS 80
          HPSSS S+  R+E VP+G LS
Sbjct: 61 HPSSS-SNTPRDEYVPMGILS 75

[Close]

BLAST of Clc08G06440 vs. ExPASy TrEMBL
Match: A0A5D3DJD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00240 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGS-ESISDH 60
          M++ PKSRKRK+K+ PQPPR  KA  KTIEV EE D L  GY+V+Q LTG GS  SI DH
Sbjct: 1  MVNPPKSRKRKLKRSPQPPRPTKA--KTIEV-EEPDGL--GYMVEQFLTGSGSGGSIPDH 60

Query: 61 PSSSTSSNRREESVPVGSLS 80
            SS+S +R ++ VP+G LS
Sbjct: 61 YPSSSSDDREDQYVPMGILS 75

The following BLAST results are available for this feature:

BLAST of Clc08G06440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647158.1	4.7e-10	61.73	hypothetical protein Csa_018821 [Cucumis sativus]	[more]
KAA0058917.1	7.5e-08	58.75	hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713...	[more]

BLAST of Clc08G06440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G06440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF90	2.3e-10	61.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1	[more]
A0A5D3DJD1	3.7e-08	58.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc08G06440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G06440.1	Clc08G06440.1	mRNA