Clc08G06420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G06420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	VQ domain-containing protein
Location	ClcChr08: 17876606 .. 17877253 (+)
RNA-Seq Expression	Clc08G06420
Synteny	Clc08G06420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATATACTCAACTTCTGATAATTTTGTACCTTAATATAGCTTTCAATTCTGATGTCTCCTTTTTGTTTATCTTTTAACAACTAATACTCTATTACCAAATATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAACTCTTTGTCAATTATTTCATCATCATTACTCCTTTTTGGGCTGACATTAGATGAGG

mRNA sequence

TATTATATACTCAACTTCTGATAATTTTGTACCTTAATATAGCTTTCAATTCTGATGTCTCCTTTTTGTTTATCTTTTAACAACTAATACTCTATTACCAAATATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAACTCTTTGTCAATTATTTCATCATCATTACTCCTTTTTGGGCTGACATTAGATGAGG

Coding sequence (CDS)

ATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAA

Protein sequence

MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH

Homology

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BLAST of Clc08G06420 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 140/171 (81.87%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPL----PPPHRPVIIYTVSPKIIHTDPTEFK 60
           MPERKEV LQGPRPAALKITKDSHKIKKPPL    PPPHRPVIIYTVSPKIIHT+PTEFK
Sbjct: 1   MPERKEVHLQGPRPAALKITKDSHKIKKPPLPPPHPPPHRPVIIYTVSPKIIHTEPTEFK 60

Query: 61  DLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISP 120
           DLVQRLTG +P SSSNDALDHP  T+MSM M  NS DQG+ERVGHGILSPTP LLPPIS 
Sbjct: 61  DLVQRLTGLRP-SSSNDALDHP--TSMSMSMNTNSIDQGVERVGHGILSPTPGLLPPISS 120

Query: 121 NIFTPPPQ-----ATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           NIFTPPPQ     A TD SPF  FFQDFSPIA N+ SSSLDFFQQNFPDFH
Sbjct: 121 NIFTPPPQAAMAAAATDPSPFTQFFQDFSPIATNHFSSSLDFFQQNFPDFH 168

[Close]

BLAST of Clc08G06420 vs. NCBI nr
Match: KAA0058915.1 (protein MKS1-like [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-52
Identity = 124/176 (70.45%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPP--PHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPP  PHRPVIIYTVSPKIIHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDAL--DHPSHTTMSMPMIANSTDQ--GMER-VGHGILSPTPRLL 120
           VQRLTG    PSSSSN AL  DHP    +S+P+     DQ  G++R + HGILSPTP LL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120

Query: 121 PPISPNIF-TPPPQ----ATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           PPISP IF TPPPQ    AT DL+    FF D SPI  N+ S SLDFFQQNFPDFH
Sbjct: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of Clc08G06420 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-52
Identity = 115/162 (70.99%), Postives = 125/162 (77.16%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQ 60
           M ERKEVQLQGPRPAALKITKDSHKI K    PPHRPVIIYTVSPK+IHTDPT+FKDLVQ
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGK----PPHRPVIIYTVSPKVIHTDPTQFKDLVQ 60

Query: 61  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFT 120
           RLTG +PSS       H SH + +  MI ++  QG ERVGHGILSPTP LLPPI  NIFT
Sbjct: 61  RLTGHKPSS-------HDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFT 120

Query: 121 PPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           P P  + +LSP  HFF+D SPIAPN  SSSLDFF QNFPD H
Sbjct: 121 PTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 150

[Close]

BLAST of Clc08G06420 vs. NCBI nr
Match: XP_004148825.1 (protein MKS1 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-52
Identity = 122/177 (68.93%), Postives = 133/177 (75.14%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPP--PHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPP  PHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDALDHPSHTT---MSMPMIANSTDQ--GMER-VGHGILSPTPRL 120
           VQRLTG    PSSSSN AL H  H     +S+P   +  D   G++R + HGILSPTP L
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISPNIFTPPPQATT-----DLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           LPPIS  IF PPPQA       DL+    FF D SPIA N+ SSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Clc08G06420 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 114/162 (70.37%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQ 60
           M ERKE+QLQGPRPAALKITKDSHKI K    PPHRPVIIYTVSPK+IHTDPT+FKDLVQ
Sbjct: 13  MAERKELQLQGPRPAALKITKDSHKIGK----PPHRPVIIYTVSPKVIHTDPTQFKDLVQ 72

Query: 61  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFT 120
           RLTG +PSS       H SH   +  MI ++  QG ERVGHGILSPTP LLPPI  NIFT
Sbjct: 73  RLTGHKPSS-------HDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFT 132

Query: 121 PPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           P P  + +LSP  HFF+D SPIAPN  SSSLDFF QNFPD H
Sbjct: 133 PTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 162

[Close]

BLAST of Clc08G06420 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-15
Identity = 66/190 (34.74%), Postives = 86/190 (45.26%), Query Frame = 0


Query: 3   ERKEVQLQGPRPAALKITKDSHKIKKP---PLPPPHR----------PVIIYTVSPKIIH 62
           +++++Q+ GPRP+ L + KDSHKIKKP   P PPP+R          PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGH-------- 122
              +EF ++VQRLTG     SS   L+      +S      ST+    R G         
Sbjct: 78  ATASEFMNVVQRLTGI----SSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDET 137

Query: 123 ------------------GILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPIA 154
                             GILSP+P LLP  S  IF          SP  H    FSP  
Sbjct: 138 VEINTAMEEAAEFGGYAPGILSPSPALLPTASTGIF----------SPMYHQGGMFSPAI 193

[Close]

BLAST of Clc08G06420 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 52/133 (39.10%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 11  GPRPAALKITKDSHK-IKKPPLPPPH--------------------RPVIIYTVSPKIIH 70
           GP+P  LK+  DSHK IKKPPL PPH                     PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTEFKDLVQRLTG----CQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILS 119
           T P  F  LVQRLTG       SSSS+ +   P  T+             M    HG++S
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST------------MVDTSHGLIS 132

[Close]

BLAST of Clc08G06420 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 12  PRPAALKITKDSHKIKKPPLP-------PPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 65
           P P  LK+ KDSH IKKPP P        P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Clc08G06420 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 8   QLQGPRPAALKITKDSHKIKK----PPLPPPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RP++LK+  +SH IKK       P PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQ--GMERVGHGILSPTPRLLPPISPNI 125
           RLTG       N +    S  T  + +  ++T      +R     L+  P L  P S  +
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMP-LFTPSSMTL 127

[Close]

BLAST of Clc08G06420 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.4e-53
Identity = 124/176 (70.45%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPP--PHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPP  PHRPVIIYTVSPKIIHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDAL--DHPSHTTMSMPMIANSTDQ--GMER-VGHGILSPTPRLL 120
           VQRLTG    PSSSSN AL  DHP    +S+P+     DQ  G++R + HGILSPTP LL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLL 120

Query: 121 PPISPNIF-TPPPQ----ATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           PPISP IF TPPPQ    AT DL+    FF D SPI  N+ S SLDFFQQNFPDFH
Sbjct: 121 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of Clc08G06420 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.4e-52
Identity = 122/177 (68.93%), Postives = 133/177 (75.14%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPP--PHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPP  PHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDALDHPSHTT---MSMPMIANSTDQ--GMER-VGHGILSPTPRL 120
           VQRLTG    PSSSSN AL H  H     +S+P   +  D   G++R + HGILSPTP L
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISPNIFTPPPQATT-----DLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           LPPIS  IF PPPQA       DL+    FF D SPIA N+ SSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Clc08G06420 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 113/162 (69.75%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQ 60
           M ERKE+QLQGPRPAALKITKDSHKI K    PPHRPVIIYTVSPK+IHTDPT+FKDLVQ
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGK----PPHRPVIIYTVSPKVIHTDPTQFKDLVQ 60

Query: 61  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFT 120
           RLTG +PSS       H SH   +  MI ++  QG ERVGHGILSPTP LLPPI  NIFT
Sbjct: 61  RLTGHKPSS-------HDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFT 120

Query: 121 PPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           P P  + +LSP  HFF+D SPIAPN  S SLDFF QNFPD H
Sbjct: 121 PTPPQSAELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

[Close]

BLAST of Clc08G06420 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50
Identity = 112/162 (69.14%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQ 60
           M ERKEVQLQGPRPAALKITKDSHKI K    PPHRPVIIY+VSPK+IHTDPT+FKDLVQ
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGK----PPHRPVIIYSVSPKVIHTDPTQFKDLVQ 60

Query: 61  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFT 120
           RLTG +PSS       H SH   +  MI ++   G ERVGHGILSPTP LLPPI  NIFT
Sbjct: 61  RLTGHKPSS-------HDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFT 120

Query: 121 PPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           P P  + +LSP  HFF+D SPIAPN  S SLDFF QNFPD H
Sbjct: 121 PTPPQSAELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

[Close]

BLAST of Clc08G06420 vs. ExPASy TrEMBL
Match: A0A1S3B4N1 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 119/174 (68.39%), Postives = 134/174 (77.01%), Query Frame = 0


Query: 3   ERKEVQLQGPRPAALKITKDSHKIKKPPLPP--PHRPVIIYTVSPKIIHTDPTEFKDLVQ 62
           +++++QLQGPRP+ALKITKDSHKIKKPPLPP  PHRPVIIYTVSPKIIHTDPT+FKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 63  RLTGCQ--PSSSSNDAL--DHPSHTTMSMPMIANSTDQ--GMER-VGHGILSPTPRLLPP 122
           RLTG    PSSSSN AL  DHP    +S+P+     DQ  G++R + HGILSPTP LLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 123 ISPNIF-TPPPQ----ATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           ISP IF TPPPQ    AT DL+    FF D SPI  N+ S SLDFFQQNFPDFH
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of Clc08G06420 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-16
Identity = 66/190 (34.74%), Postives = 86/190 (45.26%), Query Frame = 0


Query: 3   ERKEVQLQGPRPAALKITKDSHKIKKP---PLPPPHR----------PVIIYTVSPKIIH 62
           +++++Q+ GPRP+ L + KDSHKIKKP   P PPP+R          PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGH-------- 122
              +EF ++VQRLTG     SS   L+      +S      ST+    R G         
Sbjct: 78  ATASEFMNVVQRLTGI----SSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDET 137

Query: 123 ------------------GILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPIA 154
                             GILSP+P LLP  S  IF          SP  H    FSP  
Sbjct: 138 VEINTAMEEAAEFGGYAPGILSPSPALLPTASTGIF----------SPMYHQGGMFSPAI 193

[Close]

BLAST of Clc08G06420 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 80/227 (35.24%), Postives = 95/227 (41.85%), Query Frame = 0


Query: 11  GPRPAALKITKDSHK-IKKPPLPPPH--------------------RPVIIYTVSPKIIH 70
           GPRP  LK+  DSHK IKKPPL PPH                     PVIIYTVSP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TDPTEFKDLVQRLTG----CQPSSSSNDALDHP---------SHTTMS---------MPM 130
           T P  F  LVQRLTG       SSS + +   P         SH  +S            
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPAARFAVTEKAN 132

Query: 131 IANS----------------------------TDQGMERVGH---GILSPTPRLLPPISP 159
           I+N                              +QG ER      GILSP P  LP +SP
Sbjct: 133 ISNELGTFVGGEGTMDQYYHYHHHHHHQEQQHQNQGFERPSFHHAGILSPGPNSLPSVSP 192

[Close]

BLAST of Clc08G06420 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-13
Identity = 52/133 (39.10%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 11  GPRPAALKITKDSHK-IKKPPLPPPH--------------------RPVIIYTVSPKIIH 70
           GP+P  LK+  DSHK IKKPPL PPH                     PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTEFKDLVQRLTG----CQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILS 119
           T P  F  LVQRLTG       SSSS+ +   P  T+             M    HG++S
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST------------MVDTSHGLIS 132

[Close]

BLAST of Clc08G06420 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 12  PRPAALKITKDSHKIKKPPLP-------PPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 65
           P P  LK+ KDSH IKKPP P        P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Clc08G06420 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-07
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 0


Query: 8   QLQGPRPAALKITKDSHKIKK----PPLPPPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RP++LK+  +SH IKK       P PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQ--GMERVGHGILSPTPRLLPPISPNI 125
           RLTG       N +    S  T  + +  ++T      +R     L+  P L  P S  +
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMP-LFTPSSMTL 127

The following BLAST results are available for this feature:

BLAST of Clc08G06420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885910.1	1.0e-65	81.87	protein MKS1-like [Benincasa hispida]	[more]
KAA0058915.1	1.7e-52	70.45	protein MKS1-like [Cucumis melo var. makuwa]	[more]
XP_023551504.1	3.9e-52	70.99	protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like...	[more]
XP_004148825.1	5.0e-52	68.93	protein MKS1 [Cucumis sativus]	[more]
KAG6578908.1	1.5e-51	70.37	Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Prot...	[more]

BLAST of Clc08G06420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	8.7e-15	34.74	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	1.2e-11	39.10	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9LS54	4.9e-10	56.67	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	3.3e-06	35.71	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Clc08G06420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZA1	8.4e-53	70.45	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]
A0A0A0KI80	2.4e-52	68.93	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A6J1FKV1	3.5e-51	69.75	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	1.7e-50	69.14	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]
A0A1S3B4N1	3.9e-50	68.39	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1	[more]

BLAST of Clc08G06420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	6.2e-16	34.74	MAP kinase substrate 1	[more]
AT1G21326.1	3.1e-15	35.24	VQ motif-containing protein	[more]
AT1G21320.1	8.4e-13	39.10	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	3.5e-11	56.67	VQ motif-containing protein	[more]
AT1G68450.1	2.4e-07	35.71	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 42..67 e-value: 4.6E-12 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 88..155
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 4..73
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 88..155
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 4..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G06420.1	Clc08G06420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus