Clc08G06260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G06260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 17708039 .. 17708697 (+)
RNA-Seq Expression	Clc08G06260
Synteny	Clc08G06260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCTCCCACCCACCCAAAATGGGAAGCAACAACAATGGCCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAGACAATATGAAATGGTCTCTATTATTATTATTGTTGTTGTTATTATTATTATTTTCTTTCTTCTTTATTTTAACTAATTAATGTTTTGTTGTAACAACAGGCAATCGCATCCATGCAGGCCATGGAGAGACAGCAACTCGCCGGAGGAATCATTAATGTACTAAAACCAAATTAACCAATCATAATTTGTCACGTACTAAAAGTTTTTTAATCCTACTCATGAGTTTTCTTTTTCTTTCTTTTTCTTTTTTTTTTGAAAAAAATGAAATTTCACAATGTAAGGAGCAGTTTGAATACTTTTATTGTTTACAAGGATTTAATAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAGAAAAGTTGAAGAGTGAATGTATGGTACTGTGTGGGATTGATTTAATAATGGTTTTTGTTTTTAGGGTAATGCACTGAGTGCTGCTACTACAACTACTACTACTGGAGGAGCGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGTCGGGTGGAGCAGCGGCGGTGAAGCTGCCGGCGTGATGATATACATGAAAAAACTGGTGGCCGG

mRNA sequence

CCTCCTCCCACCCACCCAAAATGGGAAGCAACAACAATGGCCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAGACAATATGAAATGGCAATCGCATCCATGCAGGCCATGGAGAGACAGCAACTCGCCGGAGGAATCATTAATGGTAATGCACTGAGTGCTGCTACTACAACTACTACTACTGGAGGAGCGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGTCGGGTGGAGCAGCGGCGGTGAAGCTGCCGGCGTGATGATATACATGAAAAAACTGGTGGCCGG

Coding sequence (CDS)

ATGGGAAGCAACAACAATGGCCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAGACAATATGAAATGGCAATCGCATCCATGCAGGCCATGGAGAGACAGCAACTCGCCGGAGGAATCATTAATGGTAATGCACTGAGTGCTGCTACTACAACTACTACTACTGGAGGAGCGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGTCGGGTGGAGCAGCGGCGGTGAAGCTGCCGGCGTGA

Protein sequence

MGSNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMERQQLAGGIINGNALSAATTTTTTGGAKKGKGDREEGASGGAAAVKLPA

Homology

[Close]

BLAST of Clc08G06260 vs. NCBI nr
Match: KAE8647188.1 (hypothetical protein Csa_019045, partial [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-18
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 3   SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMERQQLAGGIINGNALSAATTTTTTG 62
           SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAME+Q+LA G+ NG  L   T TTTTG
Sbjct: 41  SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLA-GMNNGIFLQTTTPTTTTG 100

Query: 63  GAKKGKGDREEGASGGAAAVK 84
           G  KGK D EEGASGGAA  K
Sbjct: 101 GT-KGKVDGEEGASGGAAVGK 119

[Close]

BLAST of Clc08G06260 vs. NCBI nr
Match: XP_031743959.1 (mini-chromosome maintenance complex-binding protein-like [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-18
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 3  SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMERQQLAGGIINGNALSAATTTTTTG 62
          SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAME+Q+LA G+ NG  L   T TTTTG
Sbjct: 16 SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLA-GMNNGIFLQTTTPTTTTG 75

Query: 63 GAKKGKGDREEGASGGAAAVK 84
          G  KGK D EEGASGGAA  K
Sbjct: 76 GT-KGKVDGEEGASGGAAVGK 94

[Close]

BLAST of Clc08G06260 vs. NCBI nr
Match: KAG6578921.1 (hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 8  PSRLERSLSLTSEPRTLRQYEMAIASMQAMERQQLAGGIINGNALSAATTTTTTGGAKKG 67
          PS+L+RSLS  SEPR  +QY+MAIASMQAME+Q  AG     NAL          G   G
Sbjct: 17 PSKLQRSLSTASEPRNTQQYQMAIASMQAMEKQSRAG----INAL--------LSGVANG 76

Query: 68 KGDREEGASGGAAAVKLPA 87
          + DRE G  G +  V  PA
Sbjct: 77 QADREGGTPGASPPVNFPA 83

The following BLAST results are available for this feature:

BLAST of Clc08G06260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647188.1	3.3e-18	79.01	hypothetical protein Csa_019045, partial [Cucumis sativus]	[more]
XP_031743959.1	3.3e-18	79.01	mini-chromosome maintenance complex-binding protein-like [Cucumis sativus]	[more]
KAG6578921.1	2.7e-04	49.37	hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc08G06260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G06260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G06260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G06260.1	Clc08G06260.1	mRNA